MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 152558 bp
Accession: NZ_CP066564 Location: 1334311..1486868 Organism: Histophilus somni strain ASc-MMNZ-VFA-69 Replicon: chromosome
Accession: NZ_CP066564 Location: 1334311..1486868 Organism: Histophilus somni strain ASc-MMNZ-VFA-69 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFL55_RS06015 () | 1331340..1332764 | - | 1425 | WP_011609310.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| JFL55_RS06020 () | 1332915..1334081 | + | 1167 | WP_012340713.1 | FAD-dependent monooxygenase | - |
| JFL55_RS06025 () | 1334240..1335358 | + | 1119 | WP_011609312.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| JFL55_RS06030 () | 1335342..1336202 | + | 861 | WP_011609313.1 | spermidine/putrescine ABC transporter permease PotB | - |
| JFL55_RS06035 () | 1336202..1336969 | + | 768 | WP_011609314.1 | spermidine/putrescine ABC transporter permease PotC | - |
| JFL55_RS06040 () | 1337133..1338218 | + | 1086 | WP_012340714.1 | extracellular solute-binding protein | - |
| JFL55_RS06045 () | 1338274..1341705 | - | 3432 | WP_143432552.1 | transcription-repair coupling factor | - |
| JFL55_RS06050 () | 1341711..1342427 | - | 717 | WP_012340716.1 | bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase | - |
| JFL55_RS06055 () | 1342567..1345212 | + | 2646 | WP_011609318.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| JFL55_RS06060 () | 1345574..1345900 | + | 327 | WP_012340719.1 | alkylphosphonate utilization protein | - |
| JFL55_RS06065 () | 1345937..1347154 | + | 1218 | WP_012340720.1 | aromatic amino acid transporter | - |
| JFL55_RS06070 () | 1347265..1348539 | - | 1275 | WP_198974077.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| JFL55_RS06075 () | 1348559..1348810 | - | 252 | WP_011609323.1 | BolA family transcriptional regulator | - |
| JFL55_RS06080 () | 1348823..1349155 | - | 333 | WP_132995159.1 | STAS domain-containing protein | - |
| JFL55_RS06085 () | 1349159..1349785 | - | 627 | WP_011609325.1 | phospholipid-binding protein MlaC | - |
| JFL55_RS06090 () | 1349821..1350327 | - | 507 | WP_132995157.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| JFL55_RS06095 () | 1350359..1351144 | - | 786 | WP_012340725.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| JFL55_RS06100 () | 1351141..1351935 | - | 795 | WP_011609328.1 | hypothetical protein | VF |
| JFL55_RS06105 () | 1352159..1352734 | + | 576 | WP_012340726.1 | LPS export ABC transporter periplasmic protein LptC | - |
| JFL55_RS06110 () | 1352715..1353233 | + | 519 | WP_012340727.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| JFL55_RS06115 () | 1353248..1353973 | + | 726 | WP_012340728.1 | hypothetical protein | VF |
| JFL55_RS06120 () | 1353976..1354536 | + | 561 | WP_012340729.1 | PTS sugar transporter subunit IIA | - |
| JFL55_RS06125 () | 1354539..1355399 | + | 861 | WP_011609333.1 | RNase adapter RapZ | - |
| JFL55_RS06130 () | 1355435..1357486 | - | 2052 | WP_012340730.1 | methionine--tRNA ligase | - |
| JFL55_RS06135 () | 1357627..1358748 | + | 1122 | WP_012340731.1 | iron-sulfur cluster carrier protein ApbC | - |
| JFL55_RS06140 () | 1358732..1358968 | - | 237 | WP_080514392.1 | recombinase family protein | - |
| JFL55_RS06145 () | 1359189..1359494 | - | 306 | WP_012340732.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| JFL55_RS06150 () | 1359498..1359788 | - | 291 | WP_012340733.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| JFL55_RS06155 () | 1359960..1360523 | - | 564 | WP_178384292.1 | molecular chaperone | - |
| JFL55_RS06160 () | 1360520..1361140 | - | 621 | WP_011608731.1 | NAD(P)H-dependent oxidoreductase | - |
| JFL55_RS06165 () | 1361150..1361593 | - | 444 | WP_012340735.1 | NfeD family protein | - |
| JFL55_RS06170 () | 1361640..1362560 | - | 921 | WP_011608729.1 | SPFH/Band 7/PHB domain protein | - |
| JFL55_RS06175 () | 1362843..1363295 | + | 453 | WP_011608728.1 | type II 3-dehydroquinate dehydratase | - |
| JFL55_RS06180 () | 1363484..1363945 | + | 462 | WP_012340736.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| JFL55_RS06185 () | 1364006..1365352 | + | 1347 | WP_012340737.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| JFL55_RS06190 () | 1365424..1365660 | + | 237 | WP_041605123.1 | DUF997 family protein | - |
| JFL55_RS06195 () | 1365657..1367099 | + | 1443 | WP_011608724.1 | sodium/pantothenate symporter | - |
| JFL55_RS06200 () | 1367100..1367990 | + | 891 | WP_012340738.1 | 50S ribosomal protein L11 methyltransferase | - |
| JFL55_RS06205 () | 1368177..1369160 | + | 984 | WP_012340739.1 | tRNA dihydrouridine synthase DusB | - |
| JFL55_RS06210 () | 1369154..1369450 | + | 297 | WP_011608721.1 | DNA-binding transcriptional regulator Fis | - |
| JFL55_RS06215 () | 1369499..1370497 | - | 999 | WP_012340741.1 | o-succinylbenzoate synthase | - |
| JFL55_RS06220 () | 1370497..1370637 | - | 141 | WP_157856872.1 | hypothetical protein | - |
| JFL55_RS06225 () | 1370711..1371568 | - | 858 | WP_012340742.1 | 1,4-dihydroxy-2-naphthoyl-CoA synthase | - |
| JFL55_RS06230 () | 1371722..1373023 | - | 1302 | WP_011608718.1 | phosphopyruvate hydratase | - |
| JFL55_RS06235 () | 1373263..1373841 | + | 579 | WP_011608717.1 | restriction endonuclease subunit S | - |
| JFL55_RS06240 () | 1373834..1377034 | + | 3201 | WP_012340743.1 | type I restriction endonuclease subunit R | - |
| JFL55_RS06245 () | 1377040..1378020 | + | 981 | WP_012340744.1 | Abi family protein | - |
| JFL55_RS06250 () | 1378110..1378673 | + | 564 | WP_198974078.1 | restriction endonuclease subunit S | - |
| JFL55_RS06255 () | 1378686..1379612 | - | 927 | WP_012340749.1 | hypothetical protein ; Integrase | Integrase |
| JFL55_RS06260 () | 1379634..1380140 | - | 507 | WP_198974079.1 | restriction endonuclease subunit S | - |
| JFL55_RS06265 () | 1380267..1380438 | - | 172 | Protein_1206 | CTP synthetase | - |
| JFL55_RS06270 () | 1380479..1382316 | + | 1838 | Protein_1207 | hypothetical protein | VF |
| JFL55_RS06275 () | 1382364..1383992 | - | 1629 | WP_011608709.1 | CTP synthase (glutamine hydrolyzing) | - |
| JFL55_RS06280 () | 1384219..1386225 | - | 2007 | WP_012340792.1 | transketolase | - |
| JFL55_RS06285 () | 1386506..1387012 | + | 507 | WP_012340791.1 | hypothetical protein | VF |
| JFL55_RS06290 () | 1387053..1388234 | + | 1182 | WP_041605325.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JFL55_RS06295 () | 1388291..1389313 | - | 1023 | WP_011608705.1 | porphobilinogen synthase | - |
| JFL55_RS06300 () | 1389379..1390116 | - | 738 | WP_012340789.1 | twin-arginine translocase subunit TatC | - |
| JFL55_RS06305 () | 1390113..1390667 | - | 555 | WP_012340787.1 | Sec-independent protein translocase protein TatB | - |
| JFL55_RS06310 () | 1390671..1390892 | - | 222 | WP_011608702.1 | Sec-independent protein translocase subunit TatA | - |
| JFL55_RS06315 () | 1390997..1392631 | - | 1635 | WP_075290805.1 | ubiquinone biosynthesis regulatory protein kinase UbiB | - |
| JFL55_RS06320 () | 1392631..1393266 | - | 636 | WP_012340785.1 | SCP2 domain-containing protein | - |
| JFL55_RS06325 () | 1393275..1394060 | - | 786 | WP_012340784.1 | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | - |
| JFL55_RS06330 () | 1394243..1394953 | + | 711 | WP_012340783.1 | 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | - |
| JFL55_RS06335 () | 1395643..1395830 | + | 188 | Protein_1220 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| JFL55_RS06340 () | 1395865..1403991 | + | 8127 | WP_198974080.1 | hypothetical protein | VF |
| JFL55_RS06345 () | 1403988..1404203 | + | 216 | WP_041605136.1 | hypothetical protein | - |
| JFL55_RS06350 () | 1404217..1405587 | + | 1371 | WP_198974081.1 | VENN motif pre-toxin domain-containing protein | - |
| JFL55_RS06355 () | 1405589..1406059 | + | 471 | WP_075293975.1 | hypothetical protein | - |
| JFL55_RS06360 () | 1406647..1407075 | + | 429 | WP_198974082.1 | hypothetical protein | - |
| JFL55_RS06365 () | 1407635..1410208 | + | 2574 | WP_198974083.1 | hemagglutinin repeat-containing protein | - |
| JFL55_RS06370 () | 1410213..1410458 | + | 246 | WP_012340764.1 | MafI family immunity protein | - |
| JFL55_RS06375 () | 1410511..1410675 | + | 165 | Protein_1228 | hypothetical protein | - |
| JFL55_RS06380 () | 1410678..1411064 | + | 387 | WP_012340762.1 | immunity 41 family protein | - |
| JFL55_RS06385 () | 1411061..1411771 | + | 711 | WP_012340761.1 | VENN motif pre-toxin domain-containing protein | - |
| JFL55_RS06390 () | 1411783..1411986 | + | 204 | WP_198974239.1 | hypothetical protein | - |
| JFL55_RS06395 () | 1411977..1412258 | + | 282 | WP_041605126.1 | barstar family protein | - |
| JFL55_RS06400 () | 1412432..1412860 | + | 429 | WP_012340760.1 | hypothetical protein | - |
| JFL55_RS06405 () | 1413174..1414280 | + | 1107 | WP_198974240.1 | hemagglutinin repeat-containing protein | - |
| JFL55_RS06410 () | 1414905..1415099 | - | 195 | WP_136122091.1 | hypothetical protein | - |
| JFL55_RS06415 () | 1415276..1415722 | - | 447 | WP_075294479.1 | terminase | - |
| JFL55_RS06420 () | 1415715..1416302 | - | 588 | WP_075294478.1 | SocA family protein | - |
| JFL55_RS06425 () | 1416315..1416608 | - | 294 | WP_075294477.1 | type II toxin-antitoxin system HigB family toxin | - |
| JFL55_RS06430 () | 1416747..1417142 | - | 396 | WP_011608692.1 | helix-turn-helix domain-containing protein | - |
| JFL55_RS06435 () | 1417178..1417444 | - | 267 | WP_041604501.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JFL55_RS06440 () | 1417988..1419898 | - | 1911 | WP_075294476.1 | DNA primase | - |
| JFL55_RS06445 () | 1419901..1420389 | - | 489 | WP_075294475.1 | hypothetical protein | - |
| JFL55_RS06450 () | 1420424..1420792 | - | 369 | WP_041604074.1 | hypothetical protein | - |
| JFL55_RS06455 () | 1420779..1420997 | - | 219 | WP_198974084.1 | hypothetical protein | - |
| JFL55_RS06460 () | 1420990..1421474 | - | 485 | Protein_1245 | hypothetical protein | - |
| JFL55_RS06465 () | 1421626..1422153 | - | 528 | WP_198974085.1 | ash family protein | - |
| JFL55_RS06470 () | 1422167..1422406 | - | 240 | WP_012340797.1 | hypothetical protein | - |
| JFL55_RS06475 () | 1422407..1422652 | - | 246 | WP_011608680.1 | helix-turn-helix domain-containing protein | - |
| JFL55_RS06480 () | 1422662..1422883 | - | 222 | WP_012340798.1 | AlpA family phage regulatory protein | - |
| JFL55_RS06485 () | 1423049..1423558 | - | 510 | WP_075294470.1 | hypothetical protein | - |
| JFL55_RS06490 () | 1423568..1423825 | - | 258 | WP_075294469.1 | hypothetical protein | - |
| JFL55_RS06495 () | 1424118..1425365 | - | 1248 | WP_012340800.1 | hypothetical protein ; Integrase | Integrase |
| JFL55_RS06500 () | 1426114..1426692 | + | 579 | WP_012340801.1 | hypothetical protein | - |
| JFL55_RS06505 () | 1427424..1427861 | - | 438 | WP_012340802.1 | hypothetical protein | - |
| JFL55_RS06510 () | 1428011..1428910 | + | 900 | WP_012340803.1 | hypothetical protein ; Integrase | Integrase |
| JFL55_RS06515 () | 1429183..1430154 | - | 972 | Protein_1256 | IS30 family transposase ISApl1 | Transposase |
| JFL55_RS06520 () | 1430258..1431268 | - | 1011 | WP_021112546.1 | hypothetical protein | - |
| JFL55_RS06525 () | 1431288..1431437 | + | 150 | Protein_1258 | mobilization protein | - |
| JFL55_RS06530 () | 1431438..1432031 | + | 594 | Protein_1259 | acyl-CoA--6-aminopenicillanic acid acyl-transferase | - |
| JFL55_RS06535 () | 1432185..1433000 | - | 816 | WP_000018321.1 | hypothetical protein | ARG |
| JFL55_RS06540 () | 1433336..1434172 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| JFL55_RS06545 () | 1434172..1434975 | - | 804 | WP_001082319.1 | hypothetical protein | ARG |
| JFL55_RS06550 () | 1435144..1435989 | - | 846 | WP_198974086.1 | hypothetical protein | ARG |
| JFL55_RS06555 () | 1436152..1437444 | + | 1293 | WP_014325823.1 | IS91 family transposase | - |
| JFL55_RS06560 () | 1437784..1438041 | + | 258 | Protein_1265 | IS91 family transposase | - |
| JFL55_RS06565 () | 1438510..1438956 | + | 447 | Protein_1266 | DUF3363 domain-containing protein | - |
| JFL55_RS06570 () | 1439233..1440447 | + | 1215 | WP_014325824.1 | hypothetical protein | ARG |
| JFL55_RS06575 () | 1440475..1440780 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| JFL55_RS06580 () | 1440892..1442385 | + | 1494 | WP_087437258.1 | IS91 family transposase ISVsa3 | Transposase |
| JFL55_RS06585 () | 1442416..1442745 | + | 330 | Protein_1270 | DUF3363 domain-containing protein | - |
| JFL55_RS06590 () | 1442717..1443268 | - | 552 | Protein_1271 | IS30 family transposase | - |
| JFL55_RS06595 () | 1443449..1444213 | - | 765 | WP_014325826.1 | hypothetical protein ; Integrase | Integrase |
| JFL55_RS06600 () | 1444369..1446348 | - | 1980 | WP_025235805.1 | helicase/relaxase domain-containing protein | - |
| JFL55_RS06605 () | 1446776..1447573 | - | 798 | WP_012340805.1 | type I restriction-modification system subunit M | - |
| JFL55_RS06610 () | 1447646..1448392 | - | 747 | WP_012340806.1 | hypothetical protein | - |
| JFL55_RS06615 () | 1448532..1449506 | - | 975 | WP_012340807.1 | DUF1738 domain-containing protein | - |
| JFL55_RS06620 () | 1449750..1450157 | - | 408 | WP_012340808.1 | hypothetical protein | - |
| JFL55_RS06625 () | 1450273..1451115 | - | 843 | WP_012340809.1 | hypothetical protein | - |
| JFL55_RS06630 () | 1451193..1451588 | - | 396 | WP_012340810.1 | hypothetical protein | - |
| JFL55_RS06635 () | 1451687..1451932 | - | 246 | WP_012340811.1 | hypothetical protein | - |
| JFL55_RS06640 () | 1452004..1452357 | - | 354 | WP_012340812.1 | hypothetical protein | - |
| JFL55_RS06645 () | 1452731..1453174 | + | 444 | WP_012340813.1 | TIGR03757 family integrating conjugative element protein | - |
| JFL55_RS06650 () | 1453171..1454112 | + | 942 | WP_012340815.1 | TIGR03756 family integrating conjugative element protein | - |
| JFL55_RS06655 () | 1454130..1456142 | + | 2013 | WP_012340816.1 | integrating conjugative element protein | - |
| JFL55_RS06660 () | 1456163..1456591 | + | 429 | WP_012340817.1 | hypothetical protein | - |
| JFL55_RS06665 () | 1456807..1457277 | + | 471 | WP_012340818.1 | hypothetical protein | - |
| JFL55_RS06670 () | 1457298..1457639 | + | 342 | WP_198974087.1 | hypothetical protein | - |
| JFL55_RS06675 () | 1457685..1459157 | - | 1473 | WP_012340820.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JFL55_RS06680 () | 1459168..1459485 | - | 318 | WP_012340821.1 | hypothetical protein | - |
| JFL55_RS06685 () | 1459475..1459903 | - | 429 | WP_012340822.1 | hypothetical protein | - |
| JFL55_RS06690 () | 1459903..1462740 | - | 2838 | WP_012340823.1 | conjugative transfer ATPase | - |
| JFL55_RS06695 () | 1462743..1463141 | - | 399 | WP_012340824.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JFL55_RS06700 () | 1463154..1464608 | - | 1455 | WP_012340826.1 | TIGR03752 family integrating conjugative element protein | - |
| JFL55_RS06705 () | 1464620..1465504 | - | 885 | WP_198974088.1 | TIGR03749 family integrating conjugative element protein | - |
| JFL55_RS06710 () | 1465504..1466148 | - | 645 | WP_012340828.1 | TIGR03746 family integrating conjugative element protein | - |
| JFL55_RS06715 () | 1466152..1466517 | - | 366 | WP_012340829.1 | TIGR03750 family conjugal transfer protein | - |
| JFL55_RS06720 () | 1466540..1466929 | - | 390 | WP_006248894.1 | DUF2976 domain-containing protein | - |
| JFL55_RS06725 () | 1466944..1467177 | - | 234 | WP_014325829.1 | DUF3262 family protein | - |
| JFL55_RS06730 () | 1467177..1467503 | - | 327 | WP_006248892.1 | RAQPRD family integrative conjugative element protein | - |
| JFL55_RS06735 () | 1467690..1468073 | + | 384 | WP_012340830.1 | hypothetical protein | - |
| JFL55_RS06740 () | 1468105..1468800 | - | 696 | WP_012340831.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JFL55_RS06745 () | 1468797..1469150 | - | 354 | WP_006248889.1 | hypothetical protein | - |
| JFL55_RS06750 () | 1469143..1471344 | - | 2202 | WP_012340833.1 | type IV conjugative transfer system coupling protein TraD | - |
| JFL55_RS06755 () | 1471344..1471850 | - | 507 | WP_198974089.1 | integrating conjugative element protein | - |
| JFL55_RS06760 () | 1471853..1472623 | - | 771 | WP_012340835.1 | hypothetical protein | - |
| JFL55_RS06765 () | 1472602..1473376 | - | 775 | Protein_1306 | TIGR03759 family integrating conjugative element protein | - |
| JFL55_RS06770 () | 1473376..1474005 | - | 630 | WP_006248884.1 | hypothetical protein | VF |
| JFL55_RS06775 () | 1474164..1474424 | - | 261 | WP_006248882.1 | hypothetical protein | - |
| JFL55_RS06780 () | 1474537..1474899 | - | 363 | WP_006248881.1 | hypothetical protein | - |
| JFL55_RS06785 () | 1474979..1475386 | - | 408 | WP_006248880.1 | hypothetical protein | - |
| JFL55_RS06790 () | 1475412..1476092 | - | 681 | WP_006248879.1 | hypothetical protein | - |
| JFL55_RS06795 () | 1476198..1476629 | - | 432 | WP_006248878.1 | DUF3577 domain-containing protein | - |
| JFL55_RS06800 () | 1477248..1477385 | + | 138 | WP_155242642.1 | hypothetical protein | - |
| JFL55_RS06805 () | 1477446..1479497 | - | 2052 | WP_198974090.1 | DNA topoisomerase III | - |
| JFL55_RS06810 () | 1479657..1480175 | - | 519 | WP_006248876.1 | hypothetical protein | - |
| JFL55_RS06815 () | 1480652..1481362 | + | 711 | WP_006248874.1 | hypothetical protein | - |
| JFL55_RS06820 () | 1481901..1482668 | - | 768 | WP_081906447.1 | aldo/keto reductase | - |
| JFL55_RS06825 () | 1482667..1482987 | + | 321 | WP_006248872.1 | hypothetical protein | - |
| JFL55_RS06830 () | 1483169..1483624 | + | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| JFL55_RS06835 () | 1483637..1485184 | + | 1548 | WP_025342479.1 | multicopper oxidase family protein | - |
| JFL55_RS06840 () | 1485274..1485429 | - | 156 | WP_198974091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JFL55_RS06845 () | 1485518..1485697 | + | 180 | WP_010787307.1 | hypothetical protein | - |
| JFL55_RS06850 () | 1485746..1486264 | + | 519 | WP_198974092.1 | hypothetical protein | - |
| JFL55_RS06855 () | 1486267..1486890 | - | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| JFL55_RS06860 () | 1486982..1488184 | + | 1203 | WP_198974093.1 | tetracycline efflux MFS transporter Tet(H) | - |
| JFL55_RS06865 () | 1488280..1489590 | - | 1311 | WP_198974094.1 | ISL3 family transposase | - |
| JFL55_RS06870 () | 1490428..1490880 | - | 453 | WP_198974095.1 | single-stranded DNA-binding protein | - |
| JFL55_RS06875 () | 1491238..1491723 | - | 486 | WP_198974096.1 | DUF3158 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|