MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 66975 bp
Accession: NZ_CP066344 Location: 1..66975 Organism: Xanthomonas citri pv. durantae strain LMG696 Replicon: plasmid pLMG696-1
Accession: NZ_CP066344 Location: 1..66975 Organism: Xanthomonas citri pv. durantae strain LMG696 Replicon: plasmid pLMG696-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Xdur_RS23225 (Xdur_023150) | 1..1221 | + | 1221 | WP_011052942.1 | replication initiation protein | - |
| Xdur_RS23230 (Xdur_023155) | 1587..4967 | - | 3381 | WP_258383201.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| Xdur_RS23235 (Xdur_023160) | 5213..5434 | - | 222 | WP_011052944.1 | hypothetical protein | - |
| Xdur_RS23240 (Xdur_023165) | 5724..6260 | - | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| Xdur_RS23245 (Xdur_023170) | 6250..6462 | - | 213 | WP_011052947.1 | hypothetical protein | - |
| Xdur_RS23250 (Xdur_023175) | 6459..6710 | - | 252 | WP_125459571.1 | hypothetical protein | - |
| Xdur_RS23255 (Xdur_023180) | 6733..7065 | - | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| Xdur_RS23260 (Xdur_023185) | 7065..7322 | - | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| Xdur_RS23265 (Xdur_023190) | 7528..8130 | + | 603 | WP_011052950.1 | recombinase family protein | - |
| Xdur_RS23270 (Xdur_023195) | 8114..8418 | + | 305 | Protein_9 | DUF4158 domain-containing protein | - |
| Xdur_RS23275 (Xdur_023200) | 8585..11545 | - | 2961 | WP_015472939.1 | Tn3 family transposase | - |
| Xdur_RS23280 (Xdur_023205) | 11590..12522 | - | 933 | Protein_11 | site-specific integrase | - |
| Xdur_RS23285 (Xdur_023210) | 12715..13770 | + | 1056 | WP_011052969.1 | DNA-binding protein | - |
| Xdur_RS23290 (Xdur_023215) | 13903..14979 | + | 1077 | WP_040107542.1 | XopE/AvrPphe family type III secretion system effector | - |
| Xdur_RS23295 (Xdur_023220) | 15587..16429 | - | 843 | WP_159067024.1 | hypothetical protein | - |
| Xdur_RS23300 (Xdur_023225) | 16557..16826 | + | 270 | WP_044100105.1 | hypothetical protein | - |
| Xdur_RS23305 (Xdur_023230) | 16851..17096 | + | 246 | WP_044100108.1 | hypothetical protein | - |
| Xdur_RS23310 (Xdur_023235) | 17146..17286 | + | 141 | WP_157769465.1 | hypothetical protein | - |
| Xdur_RS23315 (Xdur_023240) | 17400..17705 | + | 306 | WP_040145260.1 | hypothetical protein | - |
| Xdur_RS23320 (Xdur_023245) | 17702..17908 | + | 207 | WP_003491323.1 | hypothetical protein | - |
| Xdur_RS23325 (Xdur_023250) | 18328..19014 | + | 687 | WP_040234129.1 | hypothetical protein | - |
| Xdur_RS23330 (Xdur_023255) | 19884..20282 | + | 399 | WP_040145293.1 | hypothetical protein | - |
| Xdur_RS23335 (Xdur_023260) | 20446..20736 | + | 291 | WP_088016385.1 | hypothetical protein | - |
| Xdur_RS23340 (Xdur_023265) | 20779..21411 | + | 633 | WP_039580797.1 | DNA-binding protein | - |
| Xdur_RS23345 (Xdur_023270) | 21515..22162 | + | 648 | WP_040145295.1 | ParA family protein | - |
| Xdur_RS23350 (Xdur_023275) | 22214..22561 | + | 348 | WP_029996448.1 | hypothetical protein | - |
| Xdur_RS23355 (Xdur_023280) | 22988..23185 | + | 198 | WP_088016384.1 | hypothetical protein | - |
| Xdur_RS23360 (Xdur_023285) | 23242..23424 | + | 183 | WP_026112629.1 | hypothetical protein | - |
| Xdur_RS23365 (Xdur_023290) | 23414..23644 | + | 231 | WP_017115649.1 | antitoxin VbhA family protein | - |
| Xdur_RS23370 (Xdur_023295) | 23731..24639 | + | 909 | WP_234344770.1 | Fic family protein | - |
| Xdur_RS23375 (Xdur_023300) | 24959..25327 | + | 369 | WP_040145292.1 | hypothetical protein | - |
| Xdur_RS23380 (Xdur_023305) | 25341..26861 | + | 1521 | WP_039580787.1 | type IV secretion system DNA-binding domain-containing protein | - |
| Xdur_RS23385 (Xdur_023310) | 26865..29945 | + | 3081 | WP_040145291.1 | MobF family relaxase | - |
| Xdur_RS23390 (Xdur_023315) | 29960..31222 | + | 1263 | WP_017115150.1 | DUF1173 domain-containing protein | - |
| Xdur_RS23395 | 31497..31619 | - | 123 | WP_017116424.1 | hypothetical protein | - |
| Xdur_RS23400 (Xdur_023320) | 31735..32013 | - | 279 | WP_017116423.1 | hypothetical protein | - |
| Xdur_RS23405 (Xdur_023325) | 32015..33070 | - | 1056 | WP_026113047.1 | P-type DNA transfer ATPase VirB11 | - |
| Xdur_RS23410 (Xdur_023330) | 33048..34280 | - | 1233 | WP_040234009.1 | type IV secretion system protein VirB10 | - |
| Xdur_RS23415 (Xdur_023335) | 34277..35080 | - | 804 | WP_039580780.1 | P-type conjugative transfer protein VirB9 | - |
| Xdur_RS23420 (Xdur_023340) | 35090..35761 | - | 672 | WP_017116419.1 | type IV secretion system protein | - |
| Xdur_RS23425 (Xdur_023345) | 35769..35969 | - | 201 | WP_126952827.1 | hypothetical protein | - |
| Xdur_RS23430 (Xdur_023350) | 35990..36979 | - | 990 | WP_017116418.1 | type IV secretion system protein | - |
| Xdur_RS23435 (Xdur_023355) | 36999..37259 | - | 261 | WP_017119383.1 | EexN family lipoprotein | - |
| Xdur_RS23440 (Xdur_023360) | 37443..38147 | - | 705 | WP_076605000.1 | P-type DNA transfer protein VirB5 | - |
| Xdur_RS23445 (Xdur_023365) | 38144..38305 | - | 162 | WP_017116415.1 | hypothetical protein | - |
| Xdur_RS23450 (Xdur_023370) | 38302..40914 | - | 2613 | WP_258383199.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| Xdur_RS23455 (Xdur_023375) | 40904..41236 | - | 333 | WP_017120417.1 | VirB3 family type IV secretion system protein | - |
| Xdur_RS23460 (Xdur_023380) | 41252..41548 | - | 297 | WP_029996458.1 | TrbC/VirB2 family protein | - |
| Xdur_RS23465 (Xdur_023385) | 41551..41805 | - | 255 | WP_017117014.1 | hypothetical protein | - |
| Xdur_RS23470 (Xdur_023390) | 41893..42702 | - | 810 | WP_017116411.1 | lytic transglycosylase domain-containing protein | - |
| Xdur_RS23475 (Xdur_023395) | 42878..43273 | + | 396 | WP_040234089.1 | hypothetical protein | - |
| Xdur_RS23480 (Xdur_023405) | 43535..45337 | + | 1803 | WP_040145317.1 | hybrid sensor histidine kinase/response regulator | - |
| Xdur_RS23485 (Xdur_023410) | 45334..46251 | + | 918 | WP_029996462.1 | NAD-dependent epimerase/dehydratase family protein | - |
| Xdur_RS23490 (Xdur_023415) | 46351..47088 | + | 738 | WP_234344768.1 | response regulator transcription factor | - |
| Xdur_RS23495 (Xdur_023420) | 47240..47596 | + | 357 | WP_040145256.1 | H-NS histone family protein | - |
| Xdur_RS23500 (Xdur_023425) | 47807..48064 | - | 258 | Protein_55 | SEC-C metal-binding domain-containing protein | - |
| Xdur_RS23505 (Xdur_023430) | 48084..49298 | - | 1215 | WP_040259055.1 | IS4-like element ISXac1 family transposase | - |
| Xdur_RS23510 | 49412..50341 | - | 930 | WP_234351600.1 | hypothetical protein | - |
| Xdur_RS23515 (Xdur_023440) | 50340..50930 | + | 591 | WP_234339166.1 | hypothetical protein | - |
| Xdur_RS23520 (Xdur_023445) | 50976..51428 | - | 453 | WP_040234234.1 | hypothetical protein | - |
| Xdur_RS23525 (Xdur_023450) | 51580..51918 | - | 339 | WP_234339165.1 | helix-turn-helix transcriptional regulator | - |
| Xdur_RS23530 (Xdur_023455) | 52025..52333 | + | 309 | WP_234339164.1 | hypothetical protein | - |
| Xdur_RS23535 (Xdur_023460) | 52512..53726 | - | 1215 | WP_040259055.1 | IS4-like element ISXac1 family transposase | - |
| Xdur_RS23540 (Xdur_023465) | 53751..54149 | - | 399 | WP_088016381.1 | UPF0149 family protein | - |
| Xdur_RS23545 (Xdur_023470) | 54281..55495 | + | 1215 | WP_040259055.1 | IS4-like element ISXac1 family transposase | - |
| Xdur_RS23550 (Xdur_023475) | 55513..55653 | - | 141 | Protein_65 | UPF0149 family protein | - |
| Xdur_RS23555 (Xdur_023480) | 55672..58647 | - | 2976 | WP_011345576.1 | Tn3-like element ISXc4 family transposase | - |
| Xdur_RS23560 (Xdur_023485) | 58652..59071 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| Xdur_RS23565 (Xdur_023490) | 59071..59310 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| Xdur_RS23570 (Xdur_023495) | 59525..60448 | + | 924 | WP_003491216.1 | recombinase family protein | - |
| Xdur_RS23575 (Xdur_023500) | 60492..60674 | + | 183 | Protein_70 | helix-turn-helix domain-containing protein | - |
| Xdur_RS23580 (Xdur_023505) | 60805..61221 | - | 417 | WP_087962480.1 | transposase | - |
| Xdur_RS23585 (Xdur_023510) | 61275..61481 | - | 207 | WP_011052961.1 | hypothetical protein | - |
| Xdur_RS23590 (Xdur_023515) | 61786..62873 | + | 1088 | WP_087944898.1 | IS3-like element ISXac2 family transposase | - |
| Xdur_RS23595 (Xdur_023520) | 62924..63556 | + | 633 | WP_258383200.1 | StbB family protein | - |
| Xdur_RS23600 (Xdur_023525) | 63605..63958 | + | 354 | WP_039700904.1 | hypothetical protein | - |
| Xdur_RS23605 (Xdur_023530) | 64353..64562 | - | 210 | WP_015462608.1 | helix-turn-helix transcriptional regulator | - |
| Xdur_RS23610 (Xdur_023535) | 64559..64867 | - | 309 | WP_015462607.1 | hypothetical protein | - |
| Xdur_RS23615 (Xdur_023540) | 65323..65949 | + | 627 | WP_005931726.1 | ParA family protein | - |
| Xdur_RS23620 (Xdur_023545) | 65946..66269 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| Xdur_RS23625 (Xdur_023550) | 66414..66728 | + | 315 | WP_173426676.1 | ParC family partition-associated protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|