MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 53959 bp
Accession: NZ_CP065946 Location: 1191003..1244961 Organism: Pectobacterium parmentieri strain WC19161 Replicon: chromosome
Accession: NZ_CP065946 Location: 1191003..1244961 Organism: Pectobacterium parmentieri strain WC19161 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JBL47_RS05325 () | 1186122..1186535 | - | 414 | WP_162940862.1 | hypothetical protein | - |
| JBL47_RS05330 () | 1186532..1187212 | - | 681 | WP_121266051.1 | YqaJ viral recombinase family protein | - |
| JBL47_RS05335 () | 1187209..1188138 | - | 930 | WP_121266049.1 | recombinase RecT | - |
| JBL47_RS05340 () | 1188138..1188461 | - | 324 | WP_121266047.1 | hypothetical protein | - |
| JBL47_RS05345 () | 1188669..1189013 | - | 345 | WP_198339913.1 | hypothetical protein | - |
| JBL47_RS05350 () | 1189076..1189363 | - | 288 | WP_121296252.1 | hypothetical protein | - |
| JBL47_RS05355 () | 1189740..1190489 | + | 750 | WP_198482206.1 | hypothetical protein | - |
| JBL47_RS05360 () | 1190906..1191268 | - | 363 | WP_161545386.1 | hypothetical protein | - |
| JBL47_RS05365 () | 1191301..1191582 | - | 282 | WP_161545387.1 | hypothetical protein | - |
| JBL47_RS05370 () | 1191625..1191813 | - | 189 | WP_161545388.1 | hypothetical protein | - |
| JBL47_RS05375 () | 1191816..1192073 | - | 258 | WP_121296251.1 | hypothetical protein | - |
| JBL47_RS05380 () | 1192678..1193310 | - | 633 | WP_198482207.1 | LexA family transcriptional regulator | - |
| JBL47_RS05385 () | 1193408..1193626 | + | 219 | WP_198482208.1 | helix-turn-helix transcriptional regulator | - |
| JBL47_RS05390 () | 1193736..1194035 | + | 300 | WP_198482209.1 | hypothetical protein | - |
| JBL47_RS05395 () | 1194044..1194208 | + | 165 | WP_198482210.1 | hypothetical protein | - |
| JBL47_RS05400 () | 1194195..1195094 | + | 900 | WP_198339835.1 | DNA replication protein | - |
| JBL47_RS05405 () | 1195084..1196499 | + | 1416 | WP_198339838.1 | AAA family ATPase | - |
| JBL47_RS05410 () | 1196560..1196943 | + | 384 | WP_121266030.1 | hypothetical protein | - |
| JBL47_RS05415 () | 1196936..1197133 | + | 198 | WP_121266028.1 | DUF551 domain-containing protein | - |
| JBL47_RS05420 () | 1197210..1197371 | + | 162 | WP_162940858.1 | hypothetical protein | - |
| JBL47_RS05425 () | 1197375..1197824 | + | 450 | WP_121266026.1 | DUF1367 family protein | - |
| JBL47_RS05430 () | 1198131..1198658 | + | 528 | WP_198339873.1 | phage N-6-adenine-methyltransferase | - |
| JBL47_RS05435 () | 1198658..1198837 | + | 180 | WP_167494531.1 | hypothetical protein | - |
| JBL47_RS05440 () | 1198830..1199456 | + | 627 | WP_198339872.1 | recombination protein NinG | - |
| JBL47_RS05445 () | 1199560..1200051 | + | 492 | WP_198482211.1 | antiterminator | - |
| JBL47_RS05450 () | 1200327..1200512 | + | 186 | WP_039494316.1 | phage holin family protein | - |
| JBL47_RS05455 () | 1200509..1200988 | + | 480 | WP_198482212.1 | lysozyme | - |
| JBL47_RS05460 () | 1200967..1201326 | + | 360 | WP_198339911.1 | hypothetical protein | - |
| JBL47_RS05465 () | 1201591..1201872 | + | 282 | WP_198482213.1 | DUF2829 domain-containing protein | - |
| JBL47_RS05470 () | 1201997..1202266 | + | 270 | WP_198482214.1 | DUF2560 family protein | - |
| JBL47_RS05475 () | 1202406..1202651 | + | 246 | WP_198482215.1 | hypothetical protein | - |
| JBL47_RS05480 () | 1202659..1203144 | + | 486 | WP_198482216.1 | DNA-packaging protein | - |
| JBL47_RS05485 () | 1203122..1204627 | + | 1506 | WP_198482217.1 | terminase large subunit | - |
| JBL47_RS05490 () | 1204627..1206792 | + | 2166 | WP_198482218.1 | portal protein | - |
| JBL47_RS05495 () | 1206806..1207714 | + | 909 | WP_109463715.1 | scaffolding protein | - |
| JBL47_RS05500 () | 1207714..1208997 | + | 1284 | WP_121265991.1 | coat protein | - |
| JBL47_RS05505 () | 1209048..1209299 | + | 252 | WP_121265989.1 | hypothetical protein | - |
| JBL47_RS05510 () | 1209303..1209533 | + | 231 | WP_198482219.1 | hypothetical protein | - |
| JBL47_RS05515 () | 1209517..1210014 | + | 498 | WP_198339891.1 | packaged DNA stabilization gp4 family protein | - |
| JBL47_RS05520 () | 1209980..1211398 | + | 1419 | WP_198482220.1 | hypothetical protein | - |
| JBL47_RS05525 () | 1211398..1212135 | + | 738 | WP_198482221.1 | phage tail protein | - |
| JBL47_RS05530 () | 1212145..1212537 | + | 393 | WP_109463710.1 | hypothetical protein | - |
| JBL47_RS05535 () | 1212521..1213186 | + | 666 | WP_109463709.1 | DNA transfer protein | - |
| JBL47_RS05540 () | 1213186..1214589 | + | 1404 | WP_198482222.1 | phage DNA ejection protein | - |
| JBL47_RS05545 () | 1215159..1216901 | + | 1743 | WP_198482497.1 | injection protein | - |
| JBL47_RS05550 () | 1216919..1217308 | - | 390 | WP_121266707.1 | hypothetical protein | - |
| JBL47_RS05555 () | 1217325..1217678 | - | 354 | WP_162940855.1 | hypothetical protein | - |
| JBL47_RS05560 () | 1217712..1217960 | - | 249 | WP_121265974.1 | Arc family DNA-binding protein | - |
| JBL47_RS05565 () | 1218049..1218210 | + | 162 | WP_121265972.1 | Arc family DNA-binding protein | - |
| JBL47_RS05570 () | 1218282..1218653 | + | 372 | Protein_1089 | ORF6N domain-containing protein | - |
| JBL47_RS05575 () | 1218669..1218881 | + | 213 | Protein_1090 | DNA-binding protein | - |
| JBL47_RS05580 () | 1219241..1219591 | + | 351 | Protein_1091 | hypothetical protein | - |
| JBL47_RS05585 () | 1221593..1222807 | + | 1215 | WP_198482223.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JBL47_RS05590 () | 1223134..1223334 | + | 201 | WP_049594956.1 | AlpA family transcriptional regulator | - |
| JBL47_RS05595 () | 1223484..1223768 | + | 285 | WP_198482224.1 | hypothetical protein | - |
| JBL47_RS05600 () | 1223841..1224143 | + | 303 | WP_198482225.1 | hypothetical protein | - |
| JBL47_RS05605 () | 1225136..1225513 | - | 378 | WP_047458733.1 | hypothetical protein | - |
| JBL47_RS05610 () | 1226148..1226702 | + | 555 | WP_198482226.1 | membrane lipoprotein lipid attachment site-containing protein | - |
| JBL47_RS05615 () | 1226713..1226988 | + | 276 | WP_198482227.1 | hypothetical protein | - |
| JBL47_RS05620 () | 1227464..1227679 | + | 216 | WP_198482228.1 | hypothetical protein | - |
| JBL47_RS05625 () | 1227770..1228051 | + | 282 | WP_198482229.1 | helix-turn-helix transcriptional regulator | - |
| JBL47_RS05630 () | 1228044..1229144 | + | 1101 | WP_198482230.1 | reverse transcriptase family protein | - |
| JBL47_RS05635 () | 1229222..1230616 | - | 1395 | WP_198482231.1 | MobA/MobL family protein | - |
| JBL47_RS05640 () | 1231185..1231469 | + | 285 | WP_198482232.1 | DUF3892 domain-containing protein | - |
| JBL47_RS05645 () | 1231725..1231982 | + | 258 | WP_198482233.1 | hypothetical protein | - |
| JBL47_RS05650 () | 1231979..1232263 | + | 285 | WP_198482234.1 | conjugal transfer protein TraD | - |
| JBL47_RS05655 () | 1232455..1233702 | + | 1248 | Protein_1106 | hypothetical protein | VF |
| JBL47_RS05660 () | 1234339..1234517 | + | 179 | Protein_1107 | IS3 family transposase IS1400 | Transposase |
| JBL47_RS05665 () | 1234689..1235225 | + | 537 | WP_198482235.1 | SLATT domain-containing protein | - |
| JBL47_RS05670 () | 1235222..1236595 | + | 1374 | WP_198482236.1 | RNA-directed DNA polymerase | - |
| JBL47_RS05675 () | 1236782..1237294 | - | 513 | WP_198482237.1 | hypothetical protein | - |
| JBL47_RS05680 () | 1237418..1238935 | - | 1518 | WP_198482238.1 | RNA-directed DNA polymerase | - |
| JBL47_RS05685 () | 1239257..1239550 | + | 294 | WP_009111694.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JBL47_RS05690 () | 1239553..1239951 | + | 399 | WP_198482498.1 | type II toxin-antitoxin system YafO family toxin | Toxin Detail |
| JBL47_RS05695 () | 1240266..1240955 | + | 690 | Protein_1114 | integrase arm-type DNA-binding domain-containing protein | - |
| JBL47_RS05700 () | 1241036..1242129 | + | 1094 | Protein_1115 | IS3 family transposase ISYps8 | Transposase |
| JBL47_RS05705 () | 1242275..1242499 | + | 225 | WP_198482239.1 | tail fiber assembly protein | - |
| JBL47_RS05710 () | 1242620..1242724 | - | 105 | Protein_1117 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| JBL47_RS05715 () | 1242724..1243017 | + | 294 | Protein_1118 | IS3 family transposase | - |
| JBL47_RS05720 () | 1243183..1245153 | - | 1971 | WP_121265938.1 | acyltransferase | - |
| JBL47_RS05725 () | 1245328..1245560 | - | 233 | Protein_1120 | hypothetical protein | - |
| JBL47_RS05730 () | 1245560..1245805 | - | 246 | WP_198482240.1 | XRE family transcriptional regulator | - |
| JBL47_RS05735 () | 1245839..1247068 | - | 1230 | WP_198482241.1 | tyrosine-type recombinase/integrase | - |
| JBL47_RS05740 () | 1247487..1247780 | + | 294 | WP_038921611.1 | DUF1778 domain-containing protein | - |
| JBL47_RS05745 () | 1247777..1248265 | + | 489 | WP_198482242.1 | GNAT family N-acetyltransferase | - |
| JBL47_RS05750 () | 1248331..1248486 | - | 156 | Protein_1125 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|