MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 56340 bp
Accession: NZ_CP065534 Location: 864572..920911 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Accession: NZ_CP065534 Location: 864572..920911 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6N93_RS03850 () | 861057..862172 | + | 1116 | WP_085686858.1 | type II secretion system F family protein | - |
| I6N93_RS03855 () | 862183..862779 | + | 597 | WP_085686856.1 | pilus assembly protein PilX | - |
| I6N93_RS03860 () | 862784..863263 | + | 480 | WP_085686855.1 | lytic transglycosylase domain-containing protein | - |
| I6N93_RS03865 () | 863260..863949 | + | 690 | WP_085686853.1 | prepilin peptidase | - |
| I6N93_RS03870 () | 863943..865250 | + | 1308 | WP_085686851.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| I6N93_RS03875 () | 865356..866213 | + | 858 | WP_085686849.1 | plasmid transfer protein | - |
| I6N93_RS03880 () | 866231..866944 | + | 714 | WP_085686888.1 | TIGR03759 family integrating conjugative element protein | - |
| I6N93_RS03885 () | 866923..867534 | + | 612 | WP_085686847.1 | CFA/I fimbrial subunit E | VF |
| I6N93_RS03890 () | 867531..868061 | + | 531 | WP_085686845.1 | integrating conjugative element protein | - |
| I6N93_RS03895 () | 868114..868503 | + | 390 | WP_085686843.1 | hypothetical protein | - |
| I6N93_RS03900 () | 868605..870716 | + | 2112 | WP_085686841.1 | type IV conjugative transfer system coupling protein TraD | - |
| I6N93_RS03905 () | 870703..871464 | + | 762 | WP_085686839.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| I6N93_RS03910 () | 871587..871904 | + | 318 | WP_085686837.1 | integrative conjugative element protein, RAQPRD family | - |
| I6N93_RS03915 () | 871895..872140 | + | 246 | WP_085686835.1 | TIGR03758 family integrating conjugative element protein | - |
| I6N93_RS03920 () | 872153..872515 | + | 363 | WP_085686833.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| I6N93_RS03925 () | 872525..872899 | + | 375 | WP_085686831.1 | TIGR03750 family conjugal transfer protein | - |
| I6N93_RS03930 () | 872896..873540 | + | 645 | WP_085686829.1 | TIGR03746 family integrating conjugative element protein | - |
| I6N93_RS03935 () | 873540..874445 | + | 906 | WP_085686827.1 | TIGR03749 family integrating conjugative element protein | - |
| I6N93_RS03940 () | 874445..875965 | + | 1521 | WP_085686825.1 | TIGR03752 family integrating conjugative element protein | - |
| I6N93_RS03945 () | 875977..876231 | + | 255 | WP_085686823.1 | hypothetical protein | - |
| I6N93_RS03950 () | 876224..876640 | + | 417 | WP_085686821.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| I6N93_RS03955 () | 876640..879444 | + | 2805 | WP_085686819.1 | conjugative transfer ATPase | - |
| I6N93_RS03960 () | 879456..879860 | + | 405 | WP_085686817.1 | hypothetical protein | - |
| I6N93_RS03965 () | 880165..880500 | - | 336 | WP_085686815.1 | hypothetical protein | - |
| I6N93_RS03970 () | 880668..880859 | - | 192 | WP_139829921.1 | IS3 family transposase ISKpn20 | Transposase |
| I6N93_RS03975 () | 880977..881384 | + | 408 | WP_085686811.1 | TIGR03757 family integrating conjugative element protein | - |
| I6N93_RS03980 () | 881363..882340 | + | 978 | WP_176222536.1 | TIGR03756 family integrating conjugative element protein | - |
| I6N93_RS03985 () | 882352..883773 | + | 1422 | WP_112111539.1 | integrating conjugative element protein | - |
| I6N93_RS03990 () | 883775..884113 | + | 339 | WP_085686808.1 | hypothetical protein | - |
| I6N93_RS03995 () | 884124..885671 | + | 1548 | WP_085686806.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| I6N93_RS04000 () | 885723..886001 | - | 279 | WP_085686804.1 | hypothetical protein | - |
| I6N93_RS04005 () | 886334..887452 | + | 1119 | WP_085686802.1 | DUF3289 family protein | - |
| I6N93_RS04010 () | 887449..888135 | + | 687 | WP_085686800.1 | hypothetical protein | - |
| I6N93_RS04015 () | 889461..890369 | + | 909 | WP_085686798.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| I6N93_RS04020 () | 890629..893382 | + | 2754 | WP_085686796.1 | ABC transporter | - |
| I6N93_RS04025 () | 893704..895254 | - | 1551 | WP_085686794.1 | hypothetical protein | - |
| I6N93_RS04030 () | 895654..897438 | - | 1785 | WP_085686792.1 | DUF4209 domain-containing protein | - |
| I6N93_RS04035 () | 897882..898199 | + | 318 | WP_085686790.1 | hypothetical protein | - |
| I6N93_RS04040 () | 898306..898725 | + | 420 | WP_085686788.1 | hypothetical protein | - |
| I6N93_RS04045 () | 898823..899131 | + | 309 | WP_085686786.1 | hypothetical protein | - |
| I6N93_RS04050 () | 899209..899820 | + | 612 | WP_085686784.1 | hypothetical protein | - |
| I6N93_RS04055 () | 899970..900917 | + | 948 | WP_085686783.1 | DUF1281 domain-containing protein | - |
| I6N93_RS04060 () | 901042..901740 | + | 699 | WP_085686781.1 | N-6 DNA methylase | - |
| I6N93_RS04065 () | 901884..902417 | - | 534 | WP_085686779.1 | hypothetical protein | - |
| I6N93_RS04070 () | 902471..903676 | - | 1206 | WP_085686777.1 | conjugal transfer protein TraF | - |
| I6N93_RS04075 () | 903832..904716 | - | 885 | WP_085686775.1 | conjugal transfer protein TraE | - |
| I6N93_RS04080 () | 905631..907199 | + | 1569 | WP_085686886.1 | TraI domain-containing protein | - |
| I6N93_RS04085 () | 907235..908191 | + | 957 | WP_085686771.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| I6N93_RS04090 () | 908757..909473 | - | 717 | WP_085686769.1 | M48 family metallopeptidase | - |
| I6N93_RS04095 () | 909473..912568 | - | 3096 | WP_085686767.1 | HsdR family type I site-specific deoxyribonuclease | - |
| I6N93_RS04100 () | 912589..913656 | - | 1068 | WP_085686765.1 | macro domain-containing protein | Antitoxin Detail |
| I6N93_RS04105 () | 913653..914309 | - | 657 | WP_085686763.1 | DUF4433 domain-containing protein | Toxin Detail |
| I6N93_RS04110 () | 914322..915665 | - | 1344 | WP_099017421.1 | restriction endonuclease subunit S | - |
| I6N93_RS04115 () | 915683..918127 | - | 2445 | WP_085686761.1 | type I restriction-modification system subunit M | - |
| I6N93_RS04120 () | 918168..918407 | - | 240 | WP_085686759.1 | transcription factor | - |
| I6N93_RS04125 () | 918481..918753 | + | 273 | WP_112111540.1 | ash family protein | - |
| I6N93_RS04130 () | 918808..919269 | + | 462 | WP_085686757.1 | hypothetical protein | - |
| I6N93_RS04135 () | 919266..919487 | + | 222 | WP_085686755.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS04140 () | 920256..921137 | + | 882 | Protein_803 | integrase domain-containing protein | - |
| I6N93_RS04145 () | 921432..922691 | - | 1260 | WP_085686753.1 | integrase arm-type DNA-binding domain-containing protein | - |
| I6N93_RS04155 () | 923538..925691 | + | 2154 | WP_085686751.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|