MGE detailed information
MGE type: Prophage MGE length: 36427 bp
Accession: NZ_CP065534 Location: 3398532..3434958 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Accession: NZ_CP065534 Location: 3398532..3434958 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6N93_RS14980 () | 3393943..3394377 | - | 435 | WP_085689315.1 | type VI secretion system baseplate subunit TssE | - |
| I6N93_RS14985 () | 3394384..3395862 | - | 1479 | WP_085689312.1 | type VI secretion system contractile sheath large subunit | - |
| I6N93_RS14990 () | 3395893..3396396 | - | 504 | WP_085689309.1 | type VI secretion system contractile sheath small subunit | - |
| I6N93_RS14995 () | 3397836..3398354 | + | 519 | WP_026739303.1 | Hcp family type VI secretion system effector | - |
| I6N93_RS15000 () | 3398354..3398530 | + | 177 | WP_167459592.1 | hypothetical protein | - |
| I6N93_RS15005 () | 3398532..3400385 | + | 1854 | WP_085689303.1 | hypothetical protein | VF |
| I6N93_RS15010 () | 3400400..3400807 | + | 408 | WP_026741246.1 | DUF1795 domain-containing protein | - |
| I6N93_RS15015 () | 3400819..3405108 | + | 4290 | WP_197669171.1 | PAAR domain-containing protein | - |
| I6N93_RS15020 () | 3405074..3405388 | + | 315 | WP_139829957.1 | hypothetical protein | - |
| I6N93_RS15025 () | 3405437..3405742 | - | 306 | WP_085690266.1 | SymE family type I addiction module toxin | - |
| I6N93_RS15030 () | 3405818..3406207 | - | 390 | WP_085690268.1 | helix-turn-helix transcriptional regulator | - |
| I6N93_RS15035 () | 3406311..3408293 | + | 1983 | Protein_2919 | toprim domain-containing protein | - |
| I6N93_RS15040 () | 3408630..3408968 | + | 339 | WP_197669204.1 | DNA/RNA non-specific endonuclease | - |
| I6N93_RS15045 () | 3408965..3409375 | + | 411 | WP_085690242.1 | RhsIA family immunity protein | - |
| I6N93_RS15050 () | 3409448..3409672 | - | 225 | WP_085690244.1 | type I toxin-antitoxin system SymE family toxin | - |
| I6N93_RS15055 () | 3409746..3410111 | - | 366 | WP_085690252.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS15060 () | 3410290..3413271 | + | 2982 | WP_197669172.1 | toprim domain-containing protein | - |
| I6N93_RS15065 () | 3413318..3414370 | + | 1053 | WP_085690248.1 | Tyrosine recombinase XerC | VF |
| I6N93_RS15070 () | 3414394..3414840 | + | 447 | WP_197669173.1 | hypothetical protein | - |
| I6N93_RS15075 () | 3415285..3415778 | + | 494 | Protein_2927 | DNA/RNA non-specific endonuclease | - |
| I6N93_RS15080 () | 3415775..3416185 | + | 411 | WP_085690242.1 | RhsIA family immunity protein | - |
| I6N93_RS15085 () | 3416258..3416482 | - | 225 | WP_085690244.1 | type I toxin-antitoxin system SymE family toxin | - |
| I6N93_RS15090 () | 3416556..3416921 | - | 366 | WP_085690252.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS15095 () | 3417100..3420030 | + | 2931 | WP_085690246.1 | toprim domain-containing protein | - |
| I6N93_RS15100 () | 3420077..3421129 | + | 1053 | WP_085690248.1 | Tyrosine recombinase XerC | VF |
| I6N93_RS15105 () | 3421153..3421599 | + | 447 | WP_197669173.1 | hypothetical protein | - |
| I6N93_RS15110 () | 3422061..3422162 | + | 102 | Protein_2934 | Rhs family protein | - |
| I6N93_RS15115 () | 3422502..3422852 | + | 351 | WP_085690284.1 | hypothetical protein | - |
| I6N93_RS15120 () | 3422922..3423260 | - | 339 | WP_085690282.1 | type I toxin-antitoxin system SymE family toxin | - |
| I6N93_RS15125 () | 3423393..3424501 | + | 1109 | WP_100059615.1 | IS3 family transposase ISBcen15 | Transposase |
| I6N93_RS15130 () | 3425044..3425316 | + | 273 | WP_019843650.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| I6N93_RS15135 () | 3425307..3425786 | + | 480 | WP_015855199.1 | GNAT family N-acetyltransferase | Toxin Detail |
| I6N93_RS15140 () | 3426057..3426272 | - | 216 | WP_051122262.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS15145 () | 3426368..3426634 | + | 267 | WP_085685657.1 | helix-turn-helix domain-containing protein | - |
| I6N93_RS15150 () | 3426858..3428903 | - | 2046 | WP_085685659.1 | AAA family ATPase | - |
| I6N93_RS15155 () | 3428896..3429432 | - | 537 | WP_085685661.1 | ash family protein | - |
| I6N93_RS15160 () | 3429429..3429629 | - | 201 | WP_026357784.1 | AlpA family transcriptional regulator | - |
| I6N93_RS15165 () | 3429632..3430513 | - | 882 | WP_085685663.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| I6N93_RS15170 () | 3431680..3432627 | - | 948 | WP_085685665.1 | sce7725 family protein | - |
| I6N93_RS15175 () | 3432646..3433494 | - | 849 | WP_085685668.1 | sce7726 family protein | - |
| I6N93_RS15180 () | 3433696..3434958 | - | 1263 | WP_085685670.1 | hypothetical protein ; Integrase | Integrase |
| I6N93_RS15190 () | 3435463..3436755 | + | 1293 | WP_085685672.1 | DUF445 domain-containing protein | - |
| I6N93_RS15195 () | 3436820..3437890 | - | 1071 | WP_085685674.1 | LPS export ABC transporter permease LptG | - |
| I6N93_RS15200 () | 3437890..3438990 | - | 1101 | WP_085685676.1 | LPS export ABC transporter permease LptF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|