MGE detailed information
MGE type: Conjugative plasmid MGE length: 77623 bp
Accession: NZ_CP065408 Location: 1..77623 Organism: Diaphorobacter sp. JS3051 Replicon: plasmid pDCB2
Accession: NZ_CP065408 Location: 1..77623 Organism: Diaphorobacter sp. JS3051 Replicon: plasmid pDCB2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3K84_RS21270 () | 1..2559 | + | 2559 | WP_011342945.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| I3K84_RS21275 () | 2556..3338 | + | 783 | WP_011114048.1 | conjugal transfer protein TrbF | - |
| I3K84_RS21280 () | 3356..4255 | + | 900 | WP_006122480.1 | P-type conjugative transfer protein TrbG | - |
| I3K84_RS21285 () | 4258..4746 | + | 489 | WP_006122479.1 | conjugal transfer protein TrbH | - |
| I3K84_RS21290 () | 4751..6172 | + | 1422 | WP_011114050.1 | Type IV secretion system protein virB10 | VF |
| I3K84_RS21295 () | 6193..6957 | + | 765 | WP_010890135.1 | P-type conjugative transfer protein TrbJ | - |
| I3K84_RS21300 () | 6967..7194 | + | 228 | WP_000644148.1 | entry exclusion lipoprotein TrbK | - |
| I3K84_RS21305 () | 7205..8923 | + | 1719 | WP_011114051.1 | P-type conjugative transfer protein TrbL | - |
| I3K84_RS21310 () | 8941..9528 | + | 588 | WP_010890138.1 | conjugal transfer protein TrbM | - |
| I3K84_RS21315 () | 9542..10177 | + | 636 | WP_011114052.1 | hypothetical protein | VF |
| I3K84_RS21320 () | 10206..10472 | + | 267 | WP_010890140.1 | hypothetical protein | - |
| I3K84_RS21325 () | 10472..11170 | + | 699 | WP_011114053.1 | conjugal transfer protein TraX | - |
| I3K84_RS21330 () | 11186..11617 | + | 432 | WP_001665065.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| I3K84_RS21335 () | 11772..12446 | + | 675 | WP_011178411.1 | DNA methylase | - |
| I3K84_RS21340 () | 12448..13107 | - | 660 | WP_011178412.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| I3K84_RS21345 () | 13788..18134 | - | 4347 | WP_196996220.1 | DUF1738 domain-containing protein | - |
| I3K84_RS21350 () | 18138..18527 | - | 390 | WP_006122510.1 | protein TraD | - |
| I3K84_RS21355 () | 18549..20612 | - | 2064 | WP_011114056.1 | DNA topoisomerase III | - |
| I3K84_RS21360 () | 20624..21160 | - | 537 | WP_006122512.1 | conjugative transfer signal peptidase TraF | - |
| I3K84_RS21365 () | 21157..23070 | - | 1914 | WP_000694765.1 | Conjugal transfer protein TraG | VF |
| I3K84_RS21370 () | 23067..25307 | - | 2241 | WP_011114057.1 | Protein TraI | Relaxase |
| I3K84_RS21375 () | 25342..25716 | - | 375 | WP_000426567.1 | conjugal transfer transcriptional regulator TraJ | - |
| I3K84_RS21380 () | 26090..26488 | + | 399 | WP_001127128.1 | TraK family protein | - |
| I3K84_RS21385 () | 26488..27213 | + | 726 | WP_011114058.1 | protein TraL | - |
| I3K84_RS21390 () | 27213..27653 | + | 441 | WP_000718516.1 | conjugal transfer protein TraM | - |
| I3K84_RS21395 () | 27856..28509 | - | 654 | WP_000826922.1 | hypothetical protein | - |
| I3K84_RS21400 () | 28538..28885 | - | 348 | WP_000664557.1 | hypothetical protein | - |
| I3K84_RS21405 () | 29056..30087 | - | 1032 | WP_011114059.1 | DNA-binding protein | - |
| I3K84_RS21410 () | 30266..31315 | - | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| I3K84_RS21415 () | 31312..32076 | - | 765 | WP_011114061.1 | ParA family protein | - |
| I3K84_RS21420 () | 32073..32381 | - | 309 | WP_011114062.1 | KorA protein | - |
| I3K84_RS21425 () | 32488..32817 | - | 330 | WP_011114064.1 | DUF2761 domain-containing protein | - |
| I3K84_RS21430 () | 32819..33145 | - | 327 | WP_011114065.1 | hypothetical protein | - |
| I3K84_RS21435 () | 33354..33590 | - | 237 | WP_011114066.1 | stable inheritance protein KleA | - |
| I3K84_RS21440 () | 33748..34005 | - | 258 | WP_011114067.1 | hypothetical protein | - |
| I3K84_RS21445 () | 34022..35230 | - | 1209 | WP_011114068.1 | hypothetical protein | - |
| I3K84_RS21450 () | 35242..35505 | - | 264 | WP_011296181.1 | hypothetical protein | - |
| I3K84_RS21455 () | 35505..35933 | - | 429 | WP_011114069.1 | antirestriction protein | - |
| I3K84_RS21460 () | 36106..36369 | + | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| I3K84_RS21465 () | 36356..36637 | + | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| I3K84_RS21470 () | 37907..40609 | - | 2703 | WP_196996221.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| I3K84_RS21475 () | 40755..40940 | + | 186 | Protein_42 | nucleoside deaminase | - |
| I3K84_RS21480 () | 40959..41213 | - | 255 | WP_049756531.1 | hypothetical protein | - |
| I3K84_RS21485 () | 41360..42346 | + | 987 | WP_087743484.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| I3K84_RS21490 () | 42349..43425 | + | 1077 | WP_196996212.1 | mitochondrial fission ELM1 family protein | - |
| I3K84_RS21495 () | 43451..44335 | - | 885 | WP_011806212.1 | hypothetical protein | - |
| I3K84_RS21500 () | 44523..45428 | + | 906 | WP_135148047.1 | hypothetical protein | - |
| I3K84_RS21505 () | 45433..46557 | - | 1125 | WP_196996222.1 | 8-amino-7-oxononanoate synthase | VF |
| I3K84_RS21510 () | 46611..46868 | - | 258 | WP_049756493.1 | acyl carrier protein | - |
| I3K84_RS21515 () | 46879..48690 | - | 1812 | WP_087743489.1 | Long-chain-fatty-acid--AMP ligase FadD26 | VF |
| I3K84_RS21520 () | 48920..50881 | - | 1962 | WP_172207662.1 | non-ribosomal peptide synthetase | - |
| I3K84_RS21525 () | 50896..52209 | - | 1314 | WP_196996213.1 | cytochrome P450 | - |
| I3K84_RS21530 () | 52274..52942 | + | 669 | WP_196996214.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| I3K84_RS21535 () | 53017..53808 | + | 792 | WP_196996215.1 | phosphocholine cytidylyltransferase family protein | - |
| I3K84_RS21540 () | 53794..54615 | - | 822 | WP_196996216.1 | nucleotidyltransferase family protein | - |
| I3K84_RS21545 () | 54617..55744 | - | 1128 | WP_011806202.1 | hypothetical protein | - |
| I3K84_RS21550 () | 55751..56959 | - | 1209 | WP_011806201.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| I3K84_RS21555 () | 56956..58023 | - | 1068 | WP_011806200.1 | LptF/LptG family permease | - |
| I3K84_RS21560 () | 58020..59210 | - | 1191 | WP_157667096.1 | LptF/LptG family permease | - |
| I3K84_RS21565 () | 59230..59673 | - | 444 | WP_172207642.1 | HIT family protein | - |
| I3K84_RS21570 () | 59708..60631 | - | 924 | WP_196996217.1 | metallophosphoesterase | - |
| I3K84_RS21575 () | 60714..61847 | + | 1134 | WP_196996218.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| I3K84_RS21580 () | 61892..62776 | + | 885 | WP_087748139.1 | hypothetical protein | - |
| I3K84_RS21585 () | 62816..63583 | + | 768 | WP_196996219.1 | DUF3108 domain-containing protein | - |
| I3K84_RS21590 () | 63681..64796 | + | 1116 | WP_011806193.1 | fatty acid desaturase | - |
| I3K84_RS21595 () | 64769..65815 | + | 1047 | WP_172207626.1 | hypothetical protein | - |
| I3K84_RS21600 () | 65812..67584 | + | 1773 | WP_083766767.1 | Heterocyst differentiation ATP-binding protein HepA | VF |
| I3K84_RS21605 () | 67646..68593 | + | 948 | WP_011806190.1 | lysophospholipid acyltransferase family protein | - |
| I3K84_RS21610 () | 68688..69008 | + | 321 | WP_011806189.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| I3K84_RS21615 () | 69029..69529 | + | 501 | WP_041836362.1 | arsenate reductase ArsC | - |
| I3K84_RS21620 () | 69588..69743 | + | 156 | Protein_71 | arsenical efflux pump membrane protein ArsB | - |
| I3K84_RS21625 () | 69956..70081 | - | 126 | Protein_72 | mercury resistance protein | - |
| I3K84_RS21630 () | 70078..70443 | - | 366 | WP_000995360.1 | mercury resistance co-regulator MerD | - |
| I3K84_RS21635 () | 70461..72146 | - | 1686 | WP_003158917.1 | mercury(II) reductase | - |
| I3K84_RS21640 () | 72218..72493 | - | 276 | WP_003131987.1 | mercury resistance system periplasmic binding protein MerP | - |
| I3K84_RS21645 () | 72506..72856 | - | 351 | WP_003131974.1 | mercuric ion transporter MerT | - |
| I3K84_RS21650 () | 72928..73362 | + | 435 | WP_003131969.1 | mercury resistance transcriptional regulator MerR | - |
| I3K84_RS21655 () | 73475..74695 | - | 1221 | WP_011114072.1 | replication initiator protein A | - |
| I3K84_RS21660 () | 74742..75083 | - | 342 | WP_000019167.1 | single-stranded DNA-binding protein | - |
| I3K84_RS21665 () | 75197..75559 | + | 363 | WP_010890126.1 | transcriptional regulator | - |
| I3K84_RS21670 () | 75869..76831 | + | 963 | WP_000132020.1 | Type IV secretion system protein PtlH | VF |
| I3K84_RS21675 () | 76848..77312 | + | 465 | WP_011114046.1 | conjugal transfer system pilin TrbC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|