MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 118510 bp
Accession: NZ_CP065154 Location: 565571..684080 Organism: Lacticaseibacillus paracasei subsp. tolerans strain ZY-1 Replicon: chromosome
Accession: NZ_CP065154 Location: 565571..684080 Organism: Lacticaseibacillus paracasei subsp. tolerans strain ZY-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3F57_RS02650 () | 561533..562432 | + | 900 | WP_003577889.1 | shikimate dehydrogenase | - |
| I3F57_RS02655 () | 562877..563692 | + | 816 | WP_003573694.1 | homoserine O-succinyltransferase | - |
| I3F57_RS02660 () | 563726..564655 | + | 930 | WP_003577893.1 | cysteine synthase A | - |
| I3F57_RS02665 () | 564845..565390 | - | 546 | WP_003577895.1 | hypothetical protein | - |
| I3F57_RS02675 () | 565711..566880 | - | 1170 | WP_003569067.1 | IS91 family transposase ISCARN110 | Transposase |
| I3F57_RS02680 () | 566993..567253 | - | 261 | WP_003606553.1 | hypothetical protein | - |
| I3F57_RS02685 () | 567284..568204 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| I3F57_RS02690 () | 568397..569017 | + | 621 | WP_003586911.1 | hypothetical protein | - |
| I3F57_RS02695 () | 569001..569180 | - | 180 | WP_016365098.1 | hypothetical protein | - |
| I3F57_RS02700 () | 569430..570137 | - | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| I3F57_RS02705 () | 570296..570718 | - | 423 | WP_196241556.1 | hypothetical protein | - |
| I3F57_RS02710 () | 570711..571064 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| I3F57_RS02715 () | 571308..571556 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| I3F57_RS02720 () | 571598..571798 | + | 201 | WP_003572187.1 | hypothetical protein | - |
| I3F57_RS02725 () | 571769..572602 | - | 834 | WP_196241431.1 | TIGR02391 family protein | - |
| I3F57_RS02730 () | 572663..573421 | + | 759 | WP_010493122.1 | ORF6C domain-containing protein | - |
| I3F57_RS02735 () | 573422..573601 | + | 180 | WP_003572193.1 | hypothetical protein | - |
| I3F57_RS02740 () | 573594..573845 | - | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| I3F57_RS02745 () | 573911..574267 | + | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| I3F57_RS02750 () | 574352..574555 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| I3F57_RS02755 () | 574538..575083 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| I3F57_RS02760 () | 575264..575577 | + | 314 | Protein_547 | hypothetical protein | - |
| I3F57_RS02765 () | 575570..576316 | + | 747 | WP_003586926.1 | DnaD domain protein | - |
| I3F57_RS02770 () | 576331..577155 | + | 825 | WP_003574014.1 | ATP-binding protein | - |
| I3F57_RS02775 () | 577155..577673 | + | 519 | WP_003574016.1 | exonuclease domain-containing protein | - |
| I3F57_RS02780 () | 577720..578142 | + | 423 | WP_003564822.1 | hypothetical protein | - |
| I3F57_RS02785 () | 578144..578881 | + | 738 | WP_003572217.1 | hypothetical protein | - |
| I3F57_RS02790 () | 578893..579180 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| I3F57_RS02795 () | 579250..579582 | + | 333 | WP_003586929.1 | hypothetical protein | - |
| I3F57_RS02800 () | 580097..580540 | + | 444 | WP_010493154.1 | autolysin regulatory protein arpU | - |
| I3F57_RS02805 () | 581053..581706 | + | 654 | WP_003586931.1 | hypothetical protein | - |
| I3F57_RS02810 () | 581957..582953 | + | 997 | Protein_557 | IS30 family transposase ISApl1 | Transposase |
| I3F57_RS02815 () | 583149..583367 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| I3F57_RS02820 () | 583790..585006 | + | 1217 | Protein_559 | hypothetical protein | - |
| I3F57_RS02825 () | 584993..585328 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| I3F57_RS02830 () | 585490..585822 | + | 333 | WP_076626284.1 | IS3 family transposase IS1163 | Transposase |
| I3F57_RS02835 () | 585852..586580 | + | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| I3F57_RS02840 () | 586514..587455 | + | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| I3F57_RS02845 () | 587501..588364 | + | 864 | WP_099973802.1 | IS3 family transposase IS1520 | Transposase |
| I3F57_RS02850 () | 589046..589324 | + | 279 | WP_003586951.1 | hypothetical protein | - |
| I3F57_RS02855 () | 589336..589602 | + | 267 | WP_014566886.1 | hypothetical protein | - |
| I3F57_RS02860 () | 589626..591209 | + | 1584 | WP_003586954.1 | Pesticidal crystal protein Cry22Aa | VF |
| I3F57_RS02865 () | 591228..591704 | + | 477 | WP_003586956.1 | PcfB family protein | - |
| I3F57_RS02870 () | 591704..593605 | + | 1902 | WP_003586959.1 | type IV secretory system conjugative DNA transfer family protein | - |
| I3F57_RS02875 () | 593623..593829 | + | 207 | WP_003571730.1 | hypothetical protein | - |
| I3F57_RS02880 () | 593849..594682 | + | 834 | WP_003606870.1 | hypothetical protein | - |
| I3F57_RS02885 () | 594700..595071 | + | 372 | WP_016363322.1 | PrgI family protein | - |
| I3F57_RS02890 () | 595019..597475 | + | 2457 | WP_003586965.1 | ATP-binding protein | - |
| I3F57_RS02895 () | 597465..599942 | + | 2478 | WP_003586967.1 | CHAP domain-containing protein | - |
| I3F57_RS02900 () | 599956..600480 | + | 525 | WP_003586970.1 | hypothetical protein | - |
| I3F57_RS02905 () | 600498..600728 | + | 231 | WP_003586972.1 | hypothetical protein | - |
| I3F57_RS02910 () | 600764..601909 | + | 1146 | WP_003586973.1 | hypothetical protein | - |
| I3F57_RS02915 () | 601927..602901 | + | 975 | WP_016363319.1 | DNA primase | - |
| I3F57_RS02920 () | 602989..603264 | + | 276 | WP_003589454.1 | hypothetical protein | - |
| I3F57_RS02925 () | 603511..603912 | + | 402 | WP_016363316.1 | MobC family plasmid mobilization relaxosome protein | - |
| I3F57_RS02930 () | 603884..606091 | + | 2208 | WP_003606873.1 | relaxase/mobilization nuclease domain-containing protein | - |
| I3F57_RS02935 () | 606136..607527 | + | 1392 | WP_003589449.1 | DUF3991 domain-containing protein | - |
| I3F57_RS02945 () | 608704..608775 | + | 72 | Protein_584 | LtrC-like protein | - |
| I3F57_RS02950 () | 608980..609171 | - | 192 | WP_080543852.1 | transposase | - |
| I3F57_RS02955 () | 609359..610117 | + | 759 | WP_003587165.1 | MurR/RpiR family transcriptional regulator | - |
| I3F57_RS02960 () | 610235..611908 | + | 1674 | WP_003587163.1 | PTS transporter subunit EIIC | - |
| I3F57_RS02965 () | 611921..612691 | + | 771 | WP_003587161.1 | HAD-IIB family hydrolase | - |
| I3F57_RS02970 () | 612706..613191 | + | 486 | WP_016363706.1 | PTS glucose transporter subunit IIA | - |
| I3F57_RS02975 () | 613334..614121 | + | 788 | WP_099973804.1 | IS5 family transposase ISCaa8 | Transposase |
| I3F57_RS02980 () | 614176..614706 | + | 531 | WP_003587154.1 | hypothetical protein | - |
| I3F57_RS02985 () | 614721..615680 | + | 960 | WP_003587152.1 | D-2-hydroxyacid dehydrogenase | - |
| I3F57_RS02990 () | 615798..616184 | - | 387 | WP_003587151.1 | hypothetical protein | - |
| I3F57_RS02995 () | 616177..616497 | - | 321 | WP_016363695.1 | hypothetical protein | - |
| I3F57_RS03000 () | 616490..617797 | - | 1308 | WP_003587146.1 | Y-family DNA polymerase | - |
| I3F57_RS03005 () | 618316..619575 | - | 1260 | WP_003606688.1 | restriction endonuclease subunit S | - |
| I3F57_RS03010 () | 619572..621188 | - | 1617 | WP_003587143.1 | type I restriction-modification system subunit M | - |
| I3F57_RS03015 () | 621202..624369 | - | 3168 | WP_196241432.1 | HsdR family type I site-specific deoxyribonuclease | - |
| I3F57_RS03020 () | 624504..625418 | + | 915 | WP_003587138.1 | hypothetical protein | - |
| I3F57_RS03025 () | 625933..626988 | + | 1056 | WP_003587134.1 | IS30 family transposase ISCth3 | Transposase |
| I3F57_RS03030 () | 627245..627967 | + | 723 | WP_003587133.1 | nitroreductase family protein | - |
| I3F57_RS03035 () | 628069..628257 | + | 189 | WP_003587131.1 | type I toxin-antitoxin system Fst family toxin | - |
| I3F57_RS03040 () | 628344..628928 | + | 585 | WP_003587130.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| I3F57_RS03045 () | 629015..630178 | + | 1164 | WP_003587127.1 | PrsW family intramembrane metalloprotease | - |
| I3F57_RS03050 () | 630338..630730 | - | 393 | WP_003587125.1 | hypothetical protein | - |
| I3F57_RS03055 () | 630786..631037 | + | 252 | WP_003586983.1 | IS3 family transposase IS153 | Transposase |
| I3F57_RS03060 () | 631091..631933 | + | 843 | WP_029327644.1 | IS3 family transposase ISBce13 | Transposase |
| I3F57_RS03065 () | 632094..632555 | - | 462 | Protein_608 | IS3 family transposase IS1223 | Transposase |
| I3F57_RS03070 () | 632568..632831 | - | 264 | WP_003587109.1 | hypothetical protein | - |
| I3F57_RS03075 () | 632891..635713 | - | 2823 | WP_196241433.1 | cation-transporting P-type ATPase | - |
| I3F57_RS03080 () | 636022..636809 | + | 788 | WP_196241434.1 | IS5 family transposase ISCaa8 | Transposase |
| I3F57_RS03085 () | 636806..636967 | - | 162 | WP_016363761.1 | hypothetical protein | - |
| I3F57_RS03090 () | 637326..637913 | - | 588 | WP_003586668.1 | hypothetical protein ; Integrase | Integrase |
| I3F57_RS03095 () | 637990..638268 | + | 279 | WP_003586674.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| I3F57_RS03100 () | 638268..638642 | + | 375 | WP_003586676.1 | type II toxin-antitoxin system YafQ family toxin | - |
| I3F57_RS03105 () | 638912..640327 | - | 1416 | WP_016365202.1 | IS5 family transposase ISLca2 | Transposase |
| I3F57_RS03110 () | 640736..641203 | + | 468 | WP_003587210.1 | DNA starvation/stationary phase protection protein | - |
| I3F57_RS03115 () | 641450..642193 | + | 744 | WP_003587212.1 | ABC transporter ATP-binding protein | - |
| I3F57_RS03120 () | 642171..643418 | + | 1248 | WP_010620835.1 | ABC transporter permease | - |
| I3F57_RS03125 () | 643423..644094 | + | 672 | WP_003587215.1 | TetR/AcrR family transcriptional regulator | - |
| I3F57_RS03130 () | 644198..644935 | - | 738 | Protein_621 | nicotinate phosphoribosyltransferase | - |
| I3F57_RS03135 () | 644998..645443 | + | 446 | Protein_622 | IS5 family transposase ISCARN82 | Transposase |
| I3F57_RS03140 () | 645507..646524 | + | 1018 | Protein_623 | IS30 family transposase ISSag3 | Transposase |
| I3F57_RS03145 () | 646645..647193 | - | 549 | WP_003582473.1 | DNA-binding protein | - |
| I3F57_RS03150 () | 647203..647424 | - | 222 | WP_003582479.1 | cation transporter | - |
| I3F57_RS03155 () | 647466..649364 | - | 1899 | WP_016363699.1 | heavy metal translocating P-type ATPase | - |
| I3F57_RS03160 () | 649599..649901 | - | 303 | Protein_627 | IS5 family transposase ISLrh3 | Transposase |
| I3F57_RS03170 () | 650978..651409 | + | 432 | WP_003607154.1 | CopY/TcrY family copper transport repressor | - |
| I3F57_RS03175 () | 651660..653927 | + | 2268 | WP_003589066.1 | copper-translocating P-type ATPase | - |
| I3F57_RS03180 () | 654002..654328 | - | 327 | Protein_631 | MFS transporter | - |
| I3F57_RS03185 () | 654350..654639 | - | 290 | Protein_632 | IS5 family transposase ISCARN82 | Transposase |
| I3F57_RS03190 () | 654699..654920 | - | 222 | Protein_633 | IS3 family transposase IS153 | Transposase |
| I3F57_RS03195 () | 655117..656649 | + | 1533 | WP_003606758.1 | ABC transporter permease/substrate-binding protein | - |
| I3F57_RS03200 () | 656649..657587 | + | 939 | WP_003606756.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| I3F57_RS03205 () | 657817..658878 | + | 1062 | WP_003589055.1 | ABC transporter permease | - |
| I3F57_RS03210 () | 658883..659554 | + | 672 | WP_003606755.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| I3F57_RS03215 () | 659661..660344 | + | 684 | WP_049169626.1 | IS6 family transposase ISBth20 | Transposase |
| I3F57_RS03220 () | 660587..661015 | - | 429 | WP_003586786.1 | hypothetical protein | - |
| I3F57_RS03225 () | 661204..661869 | - | 666 | Protein_640 | IS30 family transposase ISApl1 | Transposase |
| I3F57_RS03230 () | 662006..663421 | + | 1416 | WP_003600251.1 | IS5 family transposase ISLca2 | Transposase |
| I3F57_RS03235 () | 663587..665758 | - | 2172 | WP_003607130.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| I3F57_RS03240 () | 665930..666919 | + | 990 | WP_003586769.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| I3F57_RS03245 () | 666916..667401 | + | 486 | WP_003586772.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| I3F57_RS03250 () | 668133..668375 | + | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| I3F57_RS03255 () | 668368..668649 | + | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| I3F57_RS03260 () | 668878..669417 | + | 540 | WP_003600370.1 | DUF536 domain-containing protein | - |
| I3F57_RS03265 () | 669760..670443 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| I3F57_RS03270 () | 670622..671950 | + | 1329 | WP_003587117.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| I3F57_RS03275 () | 672151..672708 | + | 558 | WP_003567312.1 | hypothetical protein | - |
| I3F57_RS03280 () | 672986..673225 | + | 240 | Protein_651 | hypothetical protein | - |
| I3F57_RS03285 () | 673748..673749 | - | 2 | WP_196241435.1 | IS5 family transposase ISAba15 | Transposase |
| I3F57_RS03290 () | 674075..674458 | - | 384 | Protein_653 | ISLre2 family transposase ISLrh4 | Transposase |
| I3F57_RS03295 () | 674784..675032 | - | 249 | WP_003593233.1 | DUF1722 domain-containing protein | - |
| I3F57_RS03300 () | 675226..676332 | - | 1107 | WP_003587178.1 | anion permease | - |
| I3F57_RS03305 () | 676507..676923 | - | 417 | Protein_656 | IS3 family transposase IS153 | Transposase |
| I3F57_RS03310 () | 677149..677390 | - | 242 | Protein_657 | IS3 family transposase | - |
| I3F57_RS03315 () | 677501..678421 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| I3F57_RS03320 () | 678443..678709 | - | 267 | Protein_659 | IS3 family transposase IS153 | Transposase |
| I3F57_RS03325 () | 678894..679376 | + | 483 | WP_003589537.1 | PTS glucose transporter subunit IIA | - |
| I3F57_RS03330 () | 679437..679766 | + | 330 | WP_080596909.1 | IS3 family transposase IS1163 | Transposase |
| I3F57_RS03335 () | 679776..680717 | - | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| I3F57_RS03340 () | 680651..681379 | - | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| I3F57_RS03345 () | 681448..682311 | + | 864 | WP_016379844.1 | IS3 family transposase IS1520 | Transposase |
| I3F57_RS03350 () | 682471..683442 | + | 972 | WP_032771614.1 | LysM peptidoglycan-binding domain-containing protein | - |
| I3F57_RS03355 () | 684126..684914 | + | 789 | WP_003587240.1 | hypothetical protein | - |
| I3F57_RS03360 () | 685000..686136 | - | 1137 | WP_003587241.1 | PLP-dependent transferase | - |
| I3F57_RS03365 () | 686238..687050 | - | 813 | WP_003587242.1 | transporter substrate-binding domain-containing protein | - |
| I3F57_RS03370 () | 687082..687795 | - | 714 | WP_003573812.1 | amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|