MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 81589 bp
Accession: NZ_CP065044 Location: 1788100..1869688 Organism: Pectobacterium aroidearum strain L6 Replicon: chromosome
Accession: NZ_CP065044 Location: 1788100..1869688 Organism: Pectobacterium aroidearum strain L6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I2D83_RS07945 () | 1783148..1784452 | - | 1305 | WP_205947848.1 | lytic murein transglycosylase | - |
| I2D83_RS07950 () | 1784805..1785434 | + | 630 | Protein_1544 | efflux RND transporter permease subunit | - |
| I2D83_RS07955 () | 1785641..1786102 | + | 462 | Protein_1545 | Bcr/CflA family drug resistance efflux transporter | - |
| I2D83_RS07960 () | 1786227..1787399 | - | 1173 | WP_181828958.1 | dienelactone hydrolase family protein | - |
| I2D83_RS07965 () | 1787750..1788861 | + | 1112 | WP_205946711.1 | IS3 family transposase IS1400 | Transposase |
| I2D83_RS07970 () | 1789494..1789748 | + | 255 | WP_205947849.1 | hypothetical protein | - |
| I2D83_RS07975 () | 1789745..1790029 | + | 285 | WP_205947850.1 | conjugal transfer protein TraD | - |
| I2D83_RS07980 () | 1790118..1790558 | - | 441 | WP_180789680.1 | acetyltransferase | - |
| I2D83_RS07985 () | 1790629..1791030 | - | 402 | WP_107169393.1 | H-NS histone family protein | - |
| I2D83_RS07990 () | 1791132..1791368 | + | 237 | WP_104209892.1 | hypothetical protein | - |
| I2D83_RS07995 () | 1791450..1792001 | + | 552 | WP_205947851.1 | Major structural subunit of bundle-forming pilus | VF |
| I2D83_RS08000 () | 1792123..1793715 | + | 1593 | WP_205947852.1 | hypothetical protein | VF |
| I2D83_RS08005 () | 1793904..1795718 | + | 1815 | WP_205947853.1 | S-type pyocin domain-containing protein | - |
| I2D83_RS08010 () | 1795715..1796182 | + | 468 | WP_182099952.1 | pyocin immunity protein | - |
| I2D83_RS08015 () | 1796253..1796438 | - | 186 | WP_205947854.1 | hypothetical protein | - |
| I2D83_RS08020 () | 1796920..1797663 | + | 744 | WP_182099954.1 | FRG domain-containing protein | - |
| I2D83_RS08025 () | 1797695..1798615 | + | 921 | WP_182099955.1 | DUF2971 domain-containing protein | - |
| I2D83_RS08030 () | 1798889..1800160 | - | 1272 | WP_205948159.1 | Prophage integrase IntA ; Integrase | Integrase |
| I2D83_RS08035 () | 1801111..1802130 | + | 1020 | WP_205947855.1 | DUF4917 family protein | - |
| I2D83_RS08040 () | 1802477..1804381 | - | 1905 | WP_205947856.1 | AAA family ATPase | - |
| I2D83_RS08045 () | 1804378..1804872 | - | 495 | WP_205947857.1 | threonine transporter | - |
| I2D83_RS08050 () | 1804869..1805957 | - | 1089 | WP_205947858.1 | hypothetical protein | - |
| I2D83_RS08055 () | 1805954..1806949 | - | 996 | WP_205947859.1 | restriction endonuclease | - |
| I2D83_RS08060 () | 1807500..1807741 | - | 242 | Protein_1566 | hypothetical protein | - |
| I2D83_RS08065 () | 1807965..1808912 | + | 948 | WP_205947860.1 | DUF1738 domain-containing protein | - |
| I2D83_RS08070 () | 1809231..1809467 | + | 237 | WP_205947861.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| I2D83_RS08075 () | 1809470..1809784 | + | 315 | WP_205947862.1 | CcdB family protein | Toxin Detail |
| I2D83_RS08080 () | 1810477..1814178 | + | 3702 | WP_205947863.1 | RNA-directed DNA polymerase | - |
| I2D83_RS08085 () | 1814187..1814621 | + | 435 | WP_205947864.1 | restriction endonuclease | - |
| I2D83_RS08090 () | 1814847..1815377 | - | 531 | WP_205947865.1 | hypothetical protein | - |
| I2D83_RS08095 () | 1815452..1816189 | - | 738 | WP_205947866.1 | GTPase domain-containing protein | - |
| I2D83_RS08100 () | 1816436..1817596 | + | 1161 | WP_205947867.1 | IS30 family transposase ISCfr4 | Transposase |
| I2D83_RS08105 () | 1817939..1818859 | - | 921 | WP_205947868.1 | hypothetical protein | - |
| I2D83_RS08110 () | 1819121..1819867 | - | 747 | WP_205947869.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| I2D83_RS08115 () | 1819876..1821738 | - | 1863 | WP_205947870.1 | type IV secretory system conjugative DNA transfer family protein | - |
| I2D83_RS08120 () | 1822463..1822765 | - | 303 | WP_205947871.1 | conjugal transfer protein | - |
| I2D83_RS08125 () | 1822803..1823819 | - | 1017 | WP_205947872.1 | Type IV secretion system protein VirB11 | VF |
| I2D83_RS08130 () | 1823809..1825032 | - | 1224 | WP_205947873.1 | Type IV secretion system protein virB10 | VF |
| I2D83_RS08135 () | 1825029..1825922 | - | 894 | WP_205947874.1 | P-type conjugative transfer protein VirB9 | - |
| I2D83_RS08140 () | 1825919..1826602 | - | 684 | WP_025918850.1 | Type IV secretion system protein PtlE | VF |
| I2D83_RS08145 () | 1826595..1826735 | - | 141 | WP_025918851.1 | hypothetical protein | - |
| I2D83_RS08150 () | 1826824..1827864 | - | 1041 | WP_205947875.1 | type IV secretion system protein | - |
| I2D83_RS08155 () | 1827876..1828100 | - | 225 | WP_205947876.1 | EexN family lipoprotein | - |
| I2D83_RS08160 () | 1828111..1828827 | - | 717 | WP_205947877.1 | type IV secretion system protein | - |
| I2D83_RS08165 () | 1828851..1831598 | - | 2748 | WP_205947878.1 | Type IV secretion system protein virB4 | VF |
| I2D83_RS08170 () | 1831608..1831889 | - | 282 | WP_100017238.1 | TrbC/VirB2 family protein | - |
| I2D83_RS08175 () | 1831886..1832551 | - | 666 | WP_205947879.1 | Type IV secretion system protein virB1 | VF |
| I2D83_RS08180 () | 1832630..1832851 | - | 222 | WP_205947880.1 | hypothetical protein | - |
| I2D83_RS08185 () | 1833373..1834914 | + | 1542 | WP_205947881.1 | hypothetical protein | - |
| I2D83_RS08190 () | 1835279..1835482 | + | 204 | WP_205947882.1 | hypothetical protein | - |
| I2D83_RS08195 () | 1835594..1836373 | + | 780 | WP_205947883.1 | hypothetical protein | - |
| I2D83_RS08200 () | 1836651..1836860 | - | 210 | WP_161528575.1 | TraR/DksA family transcriptional regulator | - |
| I2D83_RS08205 () | 1836850..1837434 | - | 585 | WP_205947884.1 | DUF2857 domain-containing protein | - |
| I2D83_RS08210 () | 1837451..1837645 | - | 195 | WP_205592586.1 | AlpA family transcriptional regulator | - |
| I2D83_RS08215 () | 1837800..1838714 | - | 915 | WP_205947885.1 | hypothetical protein | - |
| I2D83_RS08220 () | 1839129..1839401 | - | 273 | WP_039468625.1 | helix-turn-helix domain-containing protein | - |
| I2D83_RS08225 () | 1839548..1839862 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| I2D83_RS08230 () | 1840048..1840362 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| I2D83_RS08235 () | 1840497..1841768 | - | 1272 | WP_205947886.1 | Prophage integrase IntA ; Integrase | Integrase |
| I2D83_RS08240 () | 1842180..1843046 | + | 867 | WP_205538324.1 | hypothetical protein | - |
| I2D83_RS08245 () | 1843125..1843331 | + | 207 | WP_015730146.1 | AlpA family transcriptional regulator | - |
| I2D83_RS08250 () | 1843701..1844906 | + | 1206 | WP_205947887.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| I2D83_RS08255 () | 1844908..1846218 | + | 1311 | WP_205947888.1 | hypothetical protein ; Integrase | Integrase |
| I2D83_RS08260 () | 1846218..1847837 | + | 1620 | WP_205947889.1 | DNA-binding protein | - |
| I2D83_RS08265 () | 1847838..1848236 | + | 399 | WP_121304242.1 | hypothetical protein | - |
| I2D83_RS08270 () | 1848334..1848744 | + | 411 | WP_205947890.1 | hypothetical protein | - |
| I2D83_RS08275 () | 1849089..1849967 | + | 879 | WP_205947891.1 | DUF4145 domain-containing protein | - |
| I2D83_RS08280 () | 1850190..1850510 | - | 321 | WP_205948160.1 | hypothetical protein | - |
| I2D83_RS08285 () | 1850540..1850917 | - | 378 | WP_165324931.1 | hypothetical protein | - |
| I2D83_RS08290 () | 1850953..1851750 | - | 798 | WP_205947892.1 | hypothetical protein | - |
| I2D83_RS08295 () | 1852069..1853412 | - | 1344 | WP_205947893.1 | relaxase/mobilization nuclease domain-containing protein | - |
| I2D83_RS08300 () | 1853381..1853755 | - | 375 | WP_205947894.1 | hypothetical protein | - |
| I2D83_RS08305 () | 1853891..1854637 | + | 747 | WP_205947895.1 | hypothetical protein | - |
| I2D83_RS08310 () | 1854676..1854999 | + | 324 | WP_205947896.1 | hypothetical protein | - |
| I2D83_RS08320 () | 1856175..1856381 | + | 207 | WP_205947897.1 | hypothetical protein | - |
| I2D83_RS08325 () | 1856537..1856737 | + | 201 | WP_205947898.1 | hypothetical protein | - |
| I2D83_RS08330 () | 1856743..1857327 | - | 585 | WP_205947899.1 | hypothetical protein | - |
| I2D83_RS08335 () | 1858001..1859287 | + | 1287 | WP_205947900.1 | hypothetical protein | - |
| I2D83_RS08340 () | 1859744..1860019 | + | 276 | WP_205947901.1 | His-Xaa-Ser system protein HxsD | - |
| I2D83_RS08345 () | 1860016..1861410 | + | 1395 | WP_205947902.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| I2D83_RS08350 () | 1861403..1862515 | + | 1113 | WP_205947903.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| I2D83_RS08355 () | 1862512..1863168 | + | 657 | WP_205947904.1 | His-Xaa-Ser repeat protein HxsA | - |
| I2D83_RS08360 () | 1863286..1863462 | - | 177 | WP_181828302.1 | hypothetical protein | - |
| I2D83_RS08365 () | 1863705..1863899 | + | 195 | WP_205947905.1 | ribbon-helix-helix protein, CopG family | - |
| I2D83_RS08370 () | 1863964..1865352 | + | 1389 | WP_205947906.1 | hypothetical protein | - |
| I2D83_RS08375 () | 1865477..1865980 | + | 504 | WP_205947907.1 | hypothetical protein | - |
| I2D83_RS08380 () | 1865984..1866265 | + | 282 | WP_205948161.1 | ATP-binding domain-containing protein | - |
| I2D83_RS08385 () | 1866477..1867688 | - | 1212 | WP_205947908.1 | hypothetical protein | - |
| I2D83_RS08390 () | 1868125..1868340 | + | 216 | Protein_1632 | Major exported protein | VF |
| I2D83_RS08395 () | 1868411..1869688 | - | 1278 | WP_103808513.1 | Prophage integrase IntA ; Integrase | Integrase |
| I2D83_RS08405 () | 1870054..1870851 | - | 798 | WP_205947909.1 | DgsA anti-repressor MtfA | - |
| I2D83_RS08415 () | 1871093..1871479 | - | 387 | WP_015839750.1 | lysozyme inhibitor LprI family protein | - |
| I2D83_RS08420 () | 1871655..1871822 | + | 168 | WP_205947910.1 | YqaE/Pmp3 family membrane protein | - |
| I2D83_RS08425 () | 1871907..1873328 | - | 1422 | WP_205947911.1 | DASS family sodium-coupled anion symporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|