MGE detailed information
MGE type: Prophage MGE length: 73125 bp
Accession: NZ_CP064376 Location: 1684340..1757464 Organism: Shigella sonnei strain PartP-Ssonnei-RM8376 Replicon: chromosome
Accession: NZ_CP064376 Location: 1684340..1757464 Organism: Shigella sonnei strain PartP-Ssonnei-RM8376 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ51_RS08755 () | 1680196..1680996 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| IUJ51_RS08760 () | 1681009..1681860 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| IUJ51_RS08765 () | 1681915..1682373 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| IUJ51_RS08770 () | 1682802..1683368 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| IUJ51_RS08775 () | 1683365..1684174 | - | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| IUJ51_RS08780 () | 1684340..1684549 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| IUJ51_RS08785 () | 1684562..1684705 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| IUJ51_RS08790 () | 1685375..1685662 | - | 288 | WP_001006860.1 | YebO family protein | - |
| IUJ51_RS08795 () | 1685737..1685880 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| IUJ51_RS08800 () | 1686039..1686278 | + | 240 | WP_001211011.1 | YobH family protein | - |
| IUJ51_RS08805 () | 1686421..1687212 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| IUJ51_RS08810 () | 1687389..1688452 | + | 1064 | Protein_1718 | MFS transporter | - |
| IUJ51_RS08815 () | 1688498..1689379 | - | 882 | WP_000984517.1 | protease HtpX | - |
| IUJ51_RS08820 () | 1689571..1691619 | - | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| IUJ51_RS08825 () | 1691639..1692337 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| IUJ51_RS08830 () | 1692434..1692931 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| IUJ51_RS08835 () | 1693061..1694344 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| IUJ51_RS08840 () | 1694313..1696946 | + | 2634 | WP_005138565.1 | hypothetical protein | VF |
| IUJ51_RS08845 () | 1697027..1698466 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IUJ51_RS08850 () | 1698584..1698667 | + | 84 | Protein_1726 | DUF1480 family protein | - |
| IUJ51_RS08860 () | 1699439..1699597 | + | 159 | Protein_1728 | DUF1480 family protein | - |
| IUJ51_RS08865 () | 1699702..1699893 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IUJ51_RS08870 () | 1699894..1700094 | - | 201 | Protein_1730 | serine/threonine-protein phosphatase | - |
| IUJ51_RS08880 () | 1701350..1701655 | - | 306 | Protein_1732 | serine/threonine-protein phosphatase | - |
| IUJ51_RS08885 () | 1701710..1702407 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| IUJ51_RS08890 () | 1702421..1702594 | - | 174 | Protein_1734 | metallophosphoesterase | - |
| IUJ51_RS08895 () | 1703245..1704401 | + | 1157 | WP_087879933.1 | IS3 family transposase IS600 | Transposase |
| IUJ51_RS08900 () | 1704612..1706318 | + | 1707 | WP_000936825.1 | hypothetical protein | VF |
| IUJ51_RS08905 () | 1706397..1707565 | + | 1169 | WP_087880099.1 | IS3 family transposase ISLad1 | Transposase |
| IUJ51_RS08915 () | 1709090..1709410 | + | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
| IUJ51_RS08920 () | 1709388..1709504 | + | 117 | Protein_1740 | host-nuclease inhibitor Gam family protein | - |
| IUJ51_RS08925 () | 1709567..1710723 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| IUJ51_RS08930 () | 1710866..1711563 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| IUJ51_RS08935 () | 1711600..1712676 | + | 1077 | WP_140046268.1 | hypothetical protein ; Integrase | Integrase |
| - | 1712807..1713041 | + | 235 | - | - | Antitoxin Detail |
| - | 1712808..1712911 | - | 104 | - | - | Toxin Detail |
| IUJ51_RS08940 () | 1713069..1713410 | - | 342 | WP_000976476.1 | YebY family protein | - |
| IUJ51_RS08945 () | 1713423..1714295 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| IUJ51_RS08950 () | 1714299..1714673 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| IUJ51_RS08955 () | 1714812..1715042 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IUJ51_RS08960 () | 1715144..1715800 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IUJ51_RS08965 () | 1715824..1716486 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IUJ51_RS08970 () | 1716483..1718543 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| IUJ51_RS08975 () | 1718752..1719411 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| IUJ51_RS08980 () | 1719738..1720094 | - | 357 | WP_001295500.1 | protein YebF | - |
| IUJ51_RS08985 () | 1720161..1720451 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| IUJ51_RS08990 () | 1720585..1721763 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| IUJ51_RS08995 () | 1721819..1722460 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| IUJ51_RS09000 () | 1722497..1724308 | - | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| IUJ51_RS09005 () | 1724543..1726018 | - | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| IUJ51_RS09010 () | 1726356..1727225 | + | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| IUJ51_RS09015 () | 1727353..1728795 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| IUJ51_RS09020 () | 1728855..1729697 | - | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| IUJ51_RS09030 () | 1730637..1730876 | + | 240 | WP_000961944.1 | hypothetical protein | - |
| IUJ51_RS09035 () | 1730965..1732833 | + | 1869 | WP_052942109.1 | glycoside hydrolase family 127 protein | - |
| IUJ51_RS09040 () | 1732870..1734502 | + | 1633 | Protein_1764 | alpha-mannosidase | - |
| IUJ51_RS09045 () | 1734558..1735255 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| IUJ51_RS09050 () | 1735271..1736728 | + | 1458 | Protein_1766 | glycoside hydrolase family 38 C-terminal domain-containing protein | - |
| IUJ51_RS09055 () | 1736816..1737787 | - | 972 | WP_000448381.1 | hypothetical protein | VF |
| IUJ51_RS09060 () | 1737907..1739229 | - | 1323 | WP_001184041.1 | murein DD-endopeptidase MepM | - |
| IUJ51_RS09065 () | 1739245..1740177 | - | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| IUJ51_RS09070 () | 1740256..1741011 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| IUJ51_RS09075 () | 1741008..1741793 | + | 786 | WP_000571478.1 | hypothetical protein | VF |
| IUJ51_RS09080 () | 1741940..1742950 | - | 1011 | WP_000568511.1 | Holliday junction branch migration DNA helicase RuvB | - |
| IUJ51_RS09085 () | 1742959..1743570 | - | 612 | WP_000580326.1 | Holliday junction branch migration protein RuvA | - |
| IUJ51_RS09090 () | 1743709..1743774 | - | 66 | WP_072095795.1 | stress response small protein YobI | - |
| IUJ51_RS09095 () | 1743847..1744449 | + | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| IUJ51_RS09100 () | 1744451..1744972 | - | 522 | WP_005140141.1 | crossover junction endodeoxyribonuclease RuvC | - |
| IUJ51_RS09105 () | 1745007..1745747 | - | 741 | WP_000907248.1 | hypothetical protein | VF |
| IUJ51_RS09110 () | 1745776..1746228 | - | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| IUJ51_RS09115 () | 1746346..1748118 | - | 1773 | WP_001258664.1 | aspartate--tRNA ligase | - |
| IUJ51_RS09120 () | 1748428..1748994 | + | 567 | WP_000891620.1 | hydrolase | - |
| IUJ51_RS09125 () | 1748991..1749086 | + | 96 | Protein_1781 | hypothetical protein | - |
| IUJ51_RS09130 () | 1749349..1749597 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| IUJ51_RS09135 () | 1750198..1751949 | + | 1752 | WP_005140132.1 | hypothetical protein | VF |
| IUJ51_RS09145 () | 1752129..1752752 | - | 624 | WP_140046269.1 | DUF4376 domain-containing protein | - |
| IUJ51_RS09150 () | 1752703..1753575 | - | 873 | Protein_1785 | phage tail protein | - |
| IUJ51_RS09155 () | 1753684..1754714 | - | 1031 | Protein_1786 | IS3 family transposase IS600 | Transposase |
| IUJ51_RS09165 () | 1755969..1756544 | - | 576 | WP_000021004.1 | DNA N-6-adenine-methyltransferase | - |
| IUJ51_RS09170 () | 1756913..1757464 | - | 552 | WP_000996134.1 | Tn3 family transposase TnpR_ISAli20 | Transposase |
| IUJ51_RS09175 () | 1758051..1758398 | + | 348 | Protein_1790 | DUF72 domain-containing protein | - |
| IUJ51_RS09180 () | 1758451..1758846 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| IUJ51_RS09185 () | 1758887..1759630 | + | 744 | WP_000019601.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| IUJ51_RS09190 () | 1759627..1760598 | + | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|