Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1712807..1713041 | Replicon | chromosome |
| Accession | NZ_CP064376 | ||
| Organism | Shigella sonnei strain PartP-Ssonnei-RM8376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1712808..1712911 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1712807..1713041 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ51_RS08915 | 1709090..1709410 | + | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
| IUJ51_RS08920 | 1709388..1709504 | + | 117 | Protein_1740 | host-nuclease inhibitor Gam family protein | - |
| IUJ51_RS08925 | 1709567..1710723 | + | 1157 | WP_087879964.1 | IS3-like element IS600 family transposase | - |
| IUJ51_RS08930 | 1710866..1711563 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| IUJ51_RS08935 | 1711600..1712676 | + | 1077 | WP_140046268.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1712807..1713041 | + | 235 | - | - | Antitoxin |
| - | 1712808..1712911 | - | 104 | - | - | Toxin |
| IUJ51_RS08940 | 1713069..1713410 | - | 342 | WP_000976476.1 | YebY family protein | - |
| IUJ51_RS08945 | 1713423..1714295 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| IUJ51_RS08950 | 1714299..1714673 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| IUJ51_RS08955 | 1714812..1715042 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IUJ51_RS08960 | 1715144..1715800 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IUJ51_RS08965 | 1715824..1716486 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 / ipaH9.8 | 1684340..1757464 | 73124 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181011 NZ_CP064376:c1712911-1712808 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT181011 NZ_CP064376:1712807-1713041 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
