MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 209377 bp
Accession: NZ_CP064354 Location: 756550..965926 Organism: Pseudomonas fragi strain NL20W Replicon: chromosome
Accession: NZ_CP064354 Location: 756550..965926 Organism: Pseudomonas fragi strain NL20W Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS178_RS03405 () | 752361..753125 | + | 765 | WP_016783317.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| IS178_RS03410 () | 753432..753857 | + | 426 | WP_003439045.1 | 30S ribosomal protein S6 | - |
| IS178_RS03415 () | 753886..754116 | + | 231 | WP_003171373.1 | 30S ribosomal protein S18 | - |
| IS178_RS03420 () | 754153..755049 | + | 897 | WP_029611708.1 | hypothetical protein | - |
| IS178_RS03425 () | 755069..755515 | + | 447 | WP_003439047.1 | 50S ribosomal protein L9 | - |
| IS178_RS03430 () | 755636..757030 | + | 1395 | WP_016783319.1 | replicative DNA helicase | - |
| IS178_RS03435 () | 757256..759562 | + | 2307 | WP_029611709.1 | YgiQ family radical SAM protein | - |
| IS178_RS03440 () | 759876..760076 | - | 201 | WP_016783321.1 | hypothetical protein | - |
| IS178_RS03445 () | 760410..760856 | + | 447 | WP_016783322.1 | azurin | - |
| IS178_RS03450 () | 760916..761938 | - | 1023 | WP_083369655.1 | DUF1338 domain-containing protein | - |
| IS178_RS03455 () | 762180..763007 | - | 828 | WP_016783324.1 | ammonia-dependent NAD(+) synthetase | - |
| IS178_RS03460 () | 763011..764225 | - | 1215 | WP_016783325.1 | nicotinate phosphoribosyltransferase | - |
| IS178_RS03465 () | 764445..765341 | - | 897 | WP_016783326.1 | LysR family transcriptional regulator | - |
| IS178_RS03470 () | 765495..766985 | + | 1491 | WP_016783327.1 | aldehyde dehydrogenase family protein | - |
| IS178_RS03475 () | 767145..768428 | + | 1284 | WP_016783328.1 | FAD-binding oxidoreductase | - |
| IS178_RS03480 () | 768792..769928 | + | 1137 | WP_016783329.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| IS178_RS03485 () | 769930..770085 | + | 156 | WP_156883333.1 | hypothetical protein | - |
| IS178_RS03490 () | 770095..771009 | + | 915 | WP_016783330.1 | branched-chain amino acid ABC transporter permease | - |
| IS178_RS03495 () | 771012..772295 | + | 1284 | WP_016783331.1 | high-affinity branched-chain amino acid ABC transporter permease LivM | - |
| IS178_RS03500 () | 772292..773179 | + | 888 | WP_016783332.1 | hypothetical protein | VF |
| IS178_RS03505 () | 773176..773892 | + | 717 | WP_016783333.1 | ABC transporter ATP-binding protein | - |
| IS178_RS03510 () | 774719..775486 | + | 768 | WP_016783334.1 | SDR family oxidoreductase | - |
| IS178_RS03515 () | 775556..776461 | + | 906 | WP_016783335.1 | cation diffusion facilitator family transporter | - |
| IS178_RS03520 () | 776589..777722 | - | 1134 | WP_016783336.1 | AGE family epimerase/isomerase | - |
| IS178_RS03525 () | 777887..778495 | - | 609 | WP_016783337.1 | hypothetical protein | VF |
| IS178_RS03530 () | 778505..779179 | - | 675 | WP_016783338.1 | urease accessory protein UreF | - |
| IS178_RS03535 () | 779176..779676 | - | 501 | WP_016783339.1 | urease accessory protein UreE | - |
| IS178_RS03540 () | 779838..780470 | - | 633 | WP_016783340.1 | TetR family transcriptional regulator | - |
| IS178_RS03545 () | 780650..780922 | - | 273 | WP_016783341.1 | hypothetical protein | - |
| IS178_RS03550 () | 781175..783241 | + | 2067 | WP_016783342.1 | AsmA family protein | - |
| IS178_RS03555 () | 783396..784280 | - | 885 | WP_016783343.1 | DMT family transporter | - |
| IS178_RS03560 () | 784378..785163 | + | 786 | WP_016783344.1 | hypothetical protein | VF |
| IS178_RS03565 () | 785227..785508 | + | 282 | WP_016783345.1 | phosphate starvation-inducible protein PsiF | - |
| IS178_RS03570 () | 785697..786707 | + | 1011 | WP_016783346.1 | membrane protein | - |
| IS178_RS03575 () | 786834..788099 | - | 1266 | WP_016783347.1 | Hsp70 family protein | - |
| IS178_RS03580 () | 788391..789302 | + | 912 | WP_016783348.1 | curved DNA-binding protein | - |
| IS178_RS03585 () | 789305..789610 | + | 306 | WP_016783349.1 | chaperone modulatory protein CbpM | - |
| IS178_RS03590 () | 789738..790871 | - | 1134 | WP_016783350.1 | HAMP domain-containing histidine kinase | - |
| IS178_RS03595 () | 790978..792678 | - | 1701 | WP_016783351.1 | hypothetical protein | VF |
| IS178_RS03600 () | 792815..793123 | - | 309 | WP_016783352.1 | hypothetical protein | VF |
| IS178_RS03605 () | 793120..793653 | - | 534 | WP_016783353.1 | GNAT family N-acetyltransferase | - |
| IS178_RS03610 () | 793650..794183 | - | 534 | WP_016783354.1 | GNAT family N-acetyltransferase | - |
| IS178_RS03615 () | 794192..794494 | - | 303 | WP_016783355.1 | hypothetical protein | VF |
| IS178_RS03620 () | 794664..795503 | - | 840 | WP_016783356.1 | urease accessory protein UreD | - |
| IS178_RS03625 () | 795536..796234 | - | 699 | WP_016783357.1 | hypothetical protein | VF |
| IS178_RS03630 () | 796356..797204 | - | 849 | WP_016783358.1 | urea ABC transporter ATP-binding protein UrtD | - |
| IS178_RS03635 () | 797201..798280 | - | 1080 | WP_016783359.1 | urea ABC transporter permease subunit UrtC | - |
| IS178_RS03640 () | 798280..799782 | - | 1503 | WP_029611712.1 | urea ABC transporter permease subunit UrtB | - |
| IS178_RS03645 () | 799873..801138 | - | 1266 | WP_016783361.1 | urea ABC transporter substrate-binding protein | - |
| IS178_RS03650 () | 801440..804823 | + | 3384 | WP_016783362.1 | DUF4329 domain-containing protein | - |
| IS178_RS03655 () | 804850..805860 | - | 1011 | WP_016783363.1 | hypothetical protein | VF |
| IS178_RS03660 () | 805857..806807 | - | 951 | WP_016783364.1 | ABC transporter substrate-binding protein | - |
| IS178_RS03665 () | 806804..807592 | - | 789 | WP_016783365.1 | hypothetical protein | VF |
| IS178_RS03670 () | 807705..809831 | - | 2127 | WP_016783366.1 | TonB-dependent receptor | - |
| IS178_RS03675 () | 809997..811373 | - | 1377 | WP_016783367.1 | PepSY domain-containing protein | - |
| IS178_RS03680 () | 811520..813577 | - | 2058 | WP_016783368.1 | TonB-dependent copper receptor | - |
| IS178_RS03685 () | 813676..814047 | - | 372 | WP_016783369.1 | DUF2946 domain-containing protein | - |
| IS178_RS03690 () | 814096..814590 | - | 495 | WP_016783370.1 | copper chaperone PCu(A)C | - |
| IS178_RS03695 () | 814639..815037 | - | 399 | WP_016783371.1 | DUF2946 domain-containing protein | - |
| IS178_RS03700 () | 815147..815437 | - | 291 | WP_016783372.1 | putative addiction module antidote protein | Antitoxin Detail |
| IS178_RS03705 () | 815441..815743 | - | 303 | WP_016783373.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IS178_RS03710 () | 815793..816521 | - | 729 | WP_016783374.1 | cobalt-precorrin-6A reductase | - |
| IS178_RS03715 () | 816518..817615 | - | 1098 | WP_016783375.1 | cobalt-precorrin-5B (C(1))-methyltransferase | - |
| IS178_RS03720 () | 817608..818819 | - | 1212 | WP_029611713.1 | bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase | - |
| IS178_RS03725 () | 819154..824148 | + | 4995 | WP_083369654.1 | hypothetical protein | - |
| IS178_RS03730 () | 824218..825570 | + | 1353 | WP_139803894.1 | precorrin-3B synthase | - |
| IS178_RS03735 () | 825563..826189 | + | 627 | WP_016783380.1 | precorrin-8X methylmutase | - |
| IS178_RS03740 () | 826189..826920 | + | 732 | WP_016783381.1 | precorrin-2 C(20)-methyltransferase | - |
| IS178_RS03745 () | 826917..828584 | + | 1668 | WP_016783382.1 | precorrin-3B C(17)-methyltransferase | - |
| IS178_RS03750 () | 828756..829352 | - | 597 | WP_016783383.1 | MarC family protein | - |
| IS178_RS03755 () | 829410..832190 | - | 2781 | WP_016783384.1 | hypothetical protein | VF |
| IS178_RS03760 () | 832290..833588 | - | 1299 | WP_016783385.1 | hypothetical protein | VF |
| IS178_RS03765 () | 833771..835378 | - | 1608 | WP_016783386.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| IS178_RS03770 () | 835460..835780 | - | 321 | WP_003439210.1 | DNA-binding transcriptional regulator Fis | - |
| IS178_RS03775 () | 835777..836790 | - | 1014 | WP_016783388.1 | tRNA dihydrouridine synthase DusB | - |
| IS178_RS03780 () | 836993..838246 | - | 1254 | WP_083369866.1 | DUF3426 domain-containing protein | - |
| IS178_RS03785 () | 838277..839155 | - | 879 | WP_016783390.1 | 50S ribosomal protein L11 methyltransferase | - |
| IS178_RS03790 () | 839429..840787 | - | 1359 | WP_016783391.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| IS178_RS03795 () | 840805..841263 | - | 459 | WP_016783392.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| IS178_RS03800 () | 841289..841744 | - | 456 | WP_016783393.1 | type II 3-dehydroquinate dehydratase | - |
| IS178_RS03805 () | 841875..843641 | - | 1767 | WP_016783394.1 | protein-disulfide reductase DsbD | - |
| IS178_RS03810 () | 843820..845781 | - | 1962 | WP_016783395.1 | hypothetical protein | VF |
| IS178_RS03815 () | 845861..847504 | - | 1644 | WP_016783396.1 | hypothetical protein | VF |
| IS178_RS03820 () | 847748..848815 | + | 1068 | WP_016783397.1 | DUF2333 family protein | - |
| IS178_RS03825 () | 848819..849352 | + | 534 | WP_016783398.1 | NUDIX hydrolase | - |
| IS178_RS03830 () | 849662..850033 | + | 372 | WP_016783399.1 | translation initiation factor Sui1 | - |
| IS178_RS03835 () | 850242..852161 | + | 1920 | WP_016783400.1 | arginine decarboxylase | - |
| IS178_RS03840 () | 852240..853583 | - | 1344 | WP_016783401.1 | MATE family efflux transporter | - |
| IS178_RS03845 () | 853846..858735 | + | 4890 | WP_083369653.1 | alpha-2-macroglobulin family protein | - |
| IS178_RS03850 () | 858895..859758 | - | 864 | WP_083369543.1 | IS3 family transposase ISThsp4 | Transposase |
| IS178_RS03855 () | 859755..860048 | - | 294 | WP_083369542.1 | IS3 family transposase ISRme13 | Transposase |
| IS178_RS03860 () | 860796..861089 | - | 294 | WP_016783546.1 | hypothetical protein | - |
| IS178_RS03865 () | 861205..863517 | + | 2313 | WP_139803972.1 | peptidoglycan glycosyltransferase PbpC | - |
| IS178_RS03870 () | 863842..865386 | + | 1545 | WP_037001783.1 | collagen-like triple helix repeat-containing protein | - |
| IS178_RS03875 () | 865580..867262 | + | 1683 | WP_029611736.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| IS178_RS03880 () | 867323..867736 | - | 414 | WP_016783550.1 | response regulator | - |
| IS178_RS03885 () | 867785..868006 | - | 222 | WP_016783551.1 | Flp family type IVb pilin | - |
| IS178_RS03890 () | 868331..869260 | + | 930 | WP_016783552.1 | Flp pilus assembly protein CpaB | - |
| IS178_RS03895 () | 869297..870523 | + | 1227 | WP_016783553.1 | hypothetical protein | VF |
| IS178_RS03900 () | 870520..871725 | + | 1206 | WP_016783554.1 | protein TadZ | - |
| IS178_RS03905 () | 871722..872996 | + | 1275 | WP_016783555.1 | hypothetical protein | VF |
| IS178_RS03910 () | 873007..873891 | + | 885 | WP_083369651.1 | type II secretion system F family protein | - |
| IS178_RS03915 () | 873893..874777 | + | 885 | WP_016783558.1 | type II secretion system F family protein | - |
| IS178_RS03920 () | 874792..875481 | + | 690 | WP_029611737.1 | tetratricopeptide repeat protein | - |
| IS178_RS03925 () | 875499..875765 | + | 267 | WP_016783560.1 | DUF3613 domain-containing protein | - |
| IS178_RS03930 () | 875916..876704 | - | 789 | WP_084357094.1 | hypothetical protein | VF |
| IS178_RS03935 () | 876822..877295 | - | 474 | WP_016783562.1 | prepilin peptidase | - |
| IS178_RS03940 () | 877367..877810 | + | 444 | WP_016783563.1 | pilus assembly protein | - |
| IS178_RS03945 () | 877800..880544 | + | 2745 | WP_169716052.1 | PAS domain-containing sensor histidine kinase | - |
| IS178_RS03950 () | 880673..882643 | - | 1971 | WP_016783565.1 | hypothetical protein | - |
| IS178_RS03955 () | 882857..883444 | - | 588 | WP_016783566.1 | DUF4136 domain-containing protein | - |
| IS178_RS03960 () | 883473..884087 | - | 615 | WP_016783567.1 | DUF4136 domain-containing protein | - |
| IS178_RS03965 () | 884111..884860 | - | 750 | WP_016783568.1 | methyltransferase domain-containing protein | - |
| IS178_RS03970 () | 884857..885162 | - | 306 | WP_016783569.1 | nucleotide pyrophosphohydrolase | - |
| IS178_RS03975 () | 885412..886266 | - | 855 | WP_016783570.1 | acyl dehydratase | - |
| IS178_RS03980 () | 886269..887621 | - | 1353 | WP_016783571.1 | hypothetical protein | VF |
| IS178_RS03985 () | 887744..889018 | + | 1275 | WP_016783572.1 | acetyl-CoA C-acetyltransferase | - |
| IS178_RS03990 () | 889120..890154 | - | 1035 | WP_016783573.1 | bile acid:sodium symporter | - |
| IS178_RS03995 () | 890237..891031 | + | 795 | WP_016783574.1 | hypothetical protein | VF |
| IS178_RS04000 () | 891158..892051 | + | 894 | WP_016783575.1 | serine protein kinase RIO | - |
| IS178_RS04005 () | 892214..893077 | - | 864 | WP_083369648.1 | MBL fold metallo-hydrolase | - |
| IS178_RS04010 () | 893170..893499 | + | 330 | WP_016783577.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IS178_RS04015 () | 893543..895108 | + | 1566 | WP_016783578.1 | TIGR01244 family phosphatase | - |
| IS178_RS04020 () | 895117..895923 | + | 807 | WP_083369647.1 | sulfite exporter TauE/SafE family protein | - |
| IS178_RS04025 () | 896048..896458 | - | 411 | WP_016783581.1 | Cu(I)-responsive transcriptional regulator | - |
| IS178_RS04030 () | 896468..898855 | - | 2388 | WP_139803971.1 | heavy metal translocating P-type ATPase | - |
| IS178_RS04035 () | 898940..899320 | - | 381 | WP_016783583.1 | hypothetical protein | - |
| IS178_RS04040 () | 899468..899668 | + | 201 | WP_016783584.1 | heavy-metal-associated domain-containing protein | - |
| IS178_RS04045 () | 899944..901140 | + | 1197 | WP_016783585.1 | multidrug effflux MFS transporter | - |
| IS178_RS04050 () | 901142..901312 | - | 171 | WP_016783586.1 | hypothetical protein | - |
| IS178_RS04055 () | 901425..902450 | - | 1026 | WP_016783587.1 | zinc-binding alcohol dehydrogenase family protein | - |
| IS178_RS04060 () | 902575..903492 | + | 918 | WP_016783588.1 | hypothetical protein | VF |
| IS178_RS04065 () | 903633..904586 | - | 954 | WP_016783589.1 | adenosine deaminase | - |
| IS178_RS04070 () | 904685..905371 | - | 687 | WP_016783590.1 | SDR family oxidoreductase | - |
| IS178_RS04075 () | 905529..906131 | - | 603 | WP_016783591.1 | IMPACT family protein | - |
| IS178_RS04080 () | 906145..906795 | - | 651 | WP_016783592.1 | TetR/AcrR family transcriptional regulator | - |
| IS178_RS04085 () | 906834..907754 | - | 921 | WP_016783593.1 | LysR family transcriptional regulator | - |
| IS178_RS04090 () | 907879..909228 | + | 1350 | WP_016783594.1 | aspartate aminotransferase family protein | - |
| IS178_RS04095 () | 909311..910804 | + | 1494 | WP_016783595.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| IS178_RS04130 () | 922061..925510 | + | 3450 | WP_083369646.1 | exodeoxyribonuclease V subunit gamma | - |
| IS178_RS04135 () | 925510..929199 | + | 3690 | WP_016783544.1 | exodeoxyribonuclease V subunit beta | - |
| IS178_RS04140 () | 929196..931280 | + | 2085 | WP_016783543.1 | exodeoxyribonuclease V subunit alpha | - |
| IS178_RS04145 () | 931497..932072 | + | 576 | WP_016783542.1 | YfiR family protein | - |
| IS178_RS04150 () | 932069..933340 | + | 1272 | WP_016783541.1 | hypothetical protein | VF |
| IS178_RS04155 () | 933349..933852 | + | 504 | WP_083369645.1 | hypothetical protein | VF |
| IS178_RS04160 () | 933977..934924 | - | 948 | WP_016783539.1 | LysR family transcriptional regulator | - |
| IS178_RS04165 () | 935039..936553 | + | 1515 | WP_016783538.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| IS178_RS04170 () | 936564..937451 | + | 888 | WP_016783537.1 | 3-hydroxyisobutyrate dehydrogenase | - |
| IS178_RS04175 () | 937512..937856 | - | 345 | WP_016783536.1 | cupin domain-containing protein | - |
| IS178_RS04180 () | 937994..939397 | - | 1404 | WP_016783535.1 | amino acid permease | - |
| IS178_RS04185 () | 939535..940416 | - | 882 | WP_016783534.1 | LysR family transcriptional regulator | - |
| IS178_RS04190 () | 940624..941388 | + | 765 | WP_016783533.1 | sulfite exporter TauE/SafE family protein | - |
| IS178_RS04195 () | 941532..942122 | + | 591 | WP_016783532.1 | NAD(P)H-dependent oxidoreductase | - |
| IS178_RS04200 () | 942234..943136 | + | 903 | WP_016783531.1 | hypothetical protein | VF |
| IS178_RS04205 () | 943285..944952 | + | 1668 | WP_016783530.1 | hypothetical protein | VF |
| IS178_RS04210 () | 945137..946582 | + | 1446 | WP_016783529.1 | SulP family inorganic anion transporter | - |
| IS178_RS04215 () | 946684..947130 | - | 447 | WP_016783528.1 | hypothetical protein | - |
| IS178_RS04220 () | 947351..949273 | - | 1923 | WP_016783527.1 | hypothetical protein | VF |
| IS178_RS04225 () | 949642..950364 | + | 723 | WP_169870091.1 | histidine phosphatase family protein | - |
| IS178_RS04230 () | 950594..951100 | - | 507 | WP_016783525.1 | hypothetical protein | - |
| IS178_RS04235 () | 951187..952653 | - | 1467 | WP_016783524.1 | phospholipid carrier-dependent glycosyltransferase | - |
| IS178_RS04240 () | 952851..954146 | - | 1296 | WP_016783523.1 | carbohydrate porin | - |
| IS178_RS04245 () | 954323..955336 | + | 1014 | WP_016783522.1 | ATP-grasp domain-containing protein | - |
| IS178_RS04250 () | 955430..956566 | + | 1137 | WP_029611732.1 | phosphoribosyltransferase domain-containing protein | - |
| IS178_RS04255 () | 956556..957314 | + | 759 | WP_083369644.1 | trehalose phosphatase | - |
| IS178_RS04260 () | 957307..958401 | + | 1095 | WP_083369643.1 | cysteine protease StiP family protein | - |
| IS178_RS04265 () | 958401..959360 | + | 960 | WP_016783518.1 | HpcH/HpaI aldolase/citrate lyase family protein | - |
| IS178_RS04270 () | 959357..960034 | + | 678 | WP_016783517.1 | HAD-IB family hydrolase | - |
| IS178_RS04275 () | 960108..960698 | + | 591 | WP_016783516.1 | tellurium resistance TerZ family protein | - |
| IS178_RS04280 () | 960695..961915 | + | 1221 | WP_016783515.1 | TerD family protein | - |
| IS178_RS04285 () | 961982..962431 | + | 450 | WP_016783514.1 | tellurite resistance TerB family protein | - |
| IS178_RS04290 () | 962439..963485 | + | 1047 | WP_016783513.1 | TerC/Alx family metal homeostasis membrane protein | - |
| IS178_RS04295 () | 963512..964087 | + | 576 | WP_016783512.1 | TerD family protein | - |
| IS178_RS04300 () | 964127..964705 | + | 579 | WP_016783511.1 | TerD family protein | - |
| IS178_RS04305 () | 965092..969804 | + | 4713 | WP_016783510.1 | AAA family ATPase | - |
| IS178_RS04310 () | 969979..970728 | + | 750 | WP_037001762.1 | FadR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|