MGE detailed information
MGE type: Genomic_island MGE length: 35173 bp
Accession: NZ_CP064354 Location: 4476815..4511987 Organism: Pseudomonas fragi strain NL20W Replicon: chromosome
Accession: NZ_CP064354 Location: 4476815..4511987 Organism: Pseudomonas fragi strain NL20W Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS178_RS20300 () | 4472077..4473663 | + | 1587 | WP_016779403.1 | site-specific integrase | - |
| IS178_RS20305 () | 4473660..4475897 | + | 2238 | WP_016779402.1 | hypothetical protein | - |
| IS178_RS20310 () | 4475900..4476298 | + | 399 | WP_016779401.1 | hypothetical protein | - |
| IS178_RS20315 () | 4476815..4477270 | - | 456 | WP_016779400.1 | hypothetical protein | - |
| IS178_RS20320 () | 4477358..4477642 | + | 285 | WP_029611226.1 | helix-turn-helix domain-containing protein | - |
| IS178_RS20325 () | 4477984..4478250 | + | 267 | WP_081481014.1 | MbcA/ParS/Xre antitoxin family protein | - |
| IS178_RS20330 () | 4478646..4479449 | - | 804 | WP_016779396.1 | hypothetical protein | - |
| IS178_RS20335 () | 4479991..4480929 | - | 939 | WP_016779395.1 | copper homeostasis membrane protein CopD | - |
| IS178_RS20340 () | 4480933..4481316 | - | 384 | WP_016779394.1 | copper homeostasis periplasmic binding protein CopC | - |
| IS178_RS20345 () | 4481676..4483064 | - | 1389 | WP_016779393.1 | heavy metal sensor histidine kinase | - |
| IS178_RS20350 () | 4483061..4483750 | - | 690 | WP_016779392.1 | hypothetical protein | VF |
| IS178_RS20355 () | 4483959..4484312 | + | 354 | WP_029611224.1 | hypothetical protein | - |
| IS178_RS20360 () | 4484482..4485018 | + | 537 | WP_016779390.1 | hypothetical protein | - |
| IS178_RS20365 () | 4485116..4485370 | + | 255 | WP_029611223.1 | DUF2933 domain-containing protein | - |
| IS178_RS20370 () | 4485373..4487709 | + | 2337 | WP_050483177.1 | heavy metal translocating P-type ATPase | - |
| IS178_RS20375 () | 4487863..4488906 | + | 1044 | WP_016779387.1 | beta-propeller fold lactonase family protein | - |
| IS178_RS20380 () | 4489073..4489471 | + | 399 | WP_169716054.1 | hypothetical protein | - |
| IS178_RS20385 () | 4489502..4490764 | - | 1263 | WP_016779384.1 | hypothetical protein | - |
| IS178_RS20390 () | 4490948..4492279 | + | 1332 | WP_139803977.1 | hypothetical protein | - |
| IS178_RS20395 () | 4492706..4493446 | + | 741 | WP_016779382.1 | DUF2807 domain-containing protein | - |
| IS178_RS20400 () | 4493453..4493866 | + | 414 | WP_016502319.1 | hypothetical protein | - |
| IS178_RS20405 () | 4493880..4494152 | + | 273 | WP_016502318.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| IS178_RS20410 () | 4494152..4494427 | + | 276 | WP_016502317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IS178_RS20415 () | 4494571..4494840 | - | 270 | WP_011077892.1 | hypothetical protein | - |
| IS178_RS20420 () | 4495235..4496215 | - | 981 | WP_034113392.1 | IS5 family transposase ISPa41 | Transposase |
| IS178_RS20425 () | 4496682..4497212 | + | 531 | WP_016779380.1 | hypothetical protein | - |
| IS178_RS20430 () | 4497452..4498231 | + | 780 | WP_169716048.1 | DUF3987 domain-containing protein | - |
| IS178_RS20435 () | 4498496..4499071 | - | 576 | WP_016779378.1 | YkgB family protein | - |
| IS178_RS20440 () | 4499249..4499590 | - | 342 | WP_016779377.1 | carboxymuconolactone decarboxylase family protein | - |
| IS178_RS20445 () | 4499701..4500612 | + | 912 | WP_016779376.1 | AraC family transcriptional regulator | - |
| IS178_RS20450 () | 4500793..4501731 | - | 939 | WP_016779375.1 | hypothetical protein | VF |
| IS178_RS20455 () | 4501853..4502779 | + | 927 | WP_016779374.1 | alpha/beta hydrolase | - |
| IS178_RS20460 () | 4503368..4504165 | + | 798 | WP_156883335.1 | IS66 family transposase ISPsy43 | Transposase |
| IS178_RS20465 () | 4505324..4505590 | - | 267 | Protein_3998 | IS1182 family transposase ISPmo1 | Transposase |
| IS178_RS20470 () | 4506075..4509935 | + | 3861 | WP_083369871.1 | hypothetical protein | VF |
| IS178_RS20475 () | 4510034..4511287 | + | 1254 | WP_016779370.1 | serine hydroxymethyltransferase | - |
| IS178_RS20480 () | 4511433..4511987 | + | 555 | WP_083369768.1 | hypothetical protein | - |
| IS178_RS20485 () | 4512084..4513052 | - | 969 | WP_016779368.1 | GTPase | - |
| IS178_RS20490 () | 4513199..4513396 | - | 198 | WP_007937254.1 | YbdD/YjiX family protein | - |
| IS178_RS20495 () | 4513412..4515478 | - | 2067 | WP_083369767.1 | carbon starvation protein A | - |
| IS178_RS20500 () | 4515615..4516982 | - | 1368 | WP_083369766.1 | DNA repair protein RadA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|