MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 138422 bp
Accession: NZ_CP063841 Location: 1..138422 Organism: Sphingopyxis granuli strain RW412 Replicon: plasmid pRW412b
Accession: NZ_CP063841 Location: 1..138422 Organism: Sphingopyxis granuli strain RW412 Replicon: plasmid pRW412b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICN83_RS20240 (ICN83_20280) | 60..1817 | + | 1758 | WP_212599226.1 | strawberry notch C-terminal domain-containing protein | - |
| ICN83_RS20245 (ICN83_20285) | 1897..2358 | + | 462 | WP_212599227.1 | MucR family transcriptional regulator | - |
| ICN83_RS20250 (ICN83_20290) | 2841..4892 | + | 2052 | WP_212599228.1 | ParB/RepB/Spo0J family partition protein | - |
| ICN83_RS20255 (ICN83_20295) | 4996..5547 | + | 552 | WP_212599229.1 | hypothetical protein | - |
| ICN83_RS20260 (ICN83_20300) | 5544..6437 | + | 894 | WP_095389380.1 | zincin-like metallopeptidase domain-containing protein | - |
| ICN83_RS20265 (ICN83_20305) | 6519..6869 | + | 351 | WP_176473679.1 | hypothetical protein | - |
| ICN83_RS20270 (ICN83_20310) | 7045..9876 | + | 2832 | WP_161785621.1 | Vitamin B12 transporter BtuB | VF |
| ICN83_RS20275 (ICN83_20315) | 10002..11567 | + | 1566 | WP_037511917.1 | sodium:solute symporter | - |
| ICN83_RS20280 (ICN83_20320) | 11554..12447 | + | 894 | WP_212599230.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| ICN83_RS20285 (ICN83_20325) | 12507..13583 | + | 1077 | WP_212599231.1 | hypothetical protein | VF |
| ICN83_RS20290 (ICN83_20330) | 13636..15006 | - | 1371 | WP_212599232.1 | FAD-linked oxidase C-terminal domain-containing protein | - |
| ICN83_RS20295 (ICN83_20335) | 15064..16110 | + | 1047 | WP_037511924.1 | SIS domain-containing protein | - |
| ICN83_RS20300 (ICN83_20340) | 16173..17237 | + | 1065 | WP_235211923.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| ICN83_RS20305 (ICN83_20345) | 17262..18062 | - | 801 | WP_244858196.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| ICN83_RS20310 (ICN83_20350) | 18174..19537 | + | 1364 | WP_095389388.1 | IS3 family transposase ISSsp2 | Transposase |
| ICN83_RS20315 (ICN83_20355) | 19568..19933 | - | 366 | WP_141237235.1 | hypothetical protein | - |
| ICN83_RS20320 (ICN83_20360) | 19930..20166 | - | 237 | WP_095389390.1 | hypothetical protein | - |
| ICN83_RS20325 (ICN83_20365) | 20333..21139 | + | 807 | WP_235211457.1 | phosphoglycolate phosphatase | - |
| ICN83_RS20330 (ICN83_20370) | 21118..22215 | - | 1098 | WP_037511939.1 | anhydro-N-acetylmuramic acid kinase | - |
| ICN83_RS20335 (ICN83_20375) | 22338..23210 | + | 873 | WP_040110192.1 | protein phosphatase 2C domain-containing protein | - |
| ICN83_RS20340 (ICN83_20380) | 23332..24099 | + | 768 | WP_052182083.1 | GntR family transcriptional regulator | - |
| ICN83_RS20345 (ICN83_20385) | 24179..25060 | - | 882 | WP_095389394.1 | BadF/BadG/BcrA/BcrD ATPase family protein | - |
| ICN83_RS20350 (ICN83_20390) | 25244..25465 | + | 222 | WP_040110191.1 | hypothetical protein | - |
| ICN83_RS21475 | 25552..25680 | - | 129 | WP_255247304.1 | hypothetical protein | - |
| ICN83_RS20355 (ICN83_20395) | 25703..26932 | - | 1230 | WP_212599233.1 | DUF1173 domain-containing protein | - |
| ICN83_RS20360 (ICN83_20400) | 26935..27435 | - | 501 | WP_058801061.1 | hypothetical protein | - |
| ICN83_RS20365 (ICN83_20405) | 27512..28105 | - | 594 | WP_058801261.1 | TraY domain-containing protein | - |
| ICN83_RS20370 (ICN83_20415) | 28522..29028 | - | 507 | WP_212599234.1 | hypothetical protein | - |
| ICN83_RS20375 (ICN83_20420) | 29165..29452 | - | 288 | WP_212599235.1 | sigma-70 region 4 domain-containing protein | - |
| ICN83_RS20380 (ICN83_20425) | 29449..29982 | - | 534 | WP_212599236.1 | hypothetical protein | - |
| ICN83_RS20385 (ICN83_20430) | 30395..32260 | - | 1866 | WP_212599271.1 | reverse transcriptase/maturase family protein | - |
| ICN83_RS20390 (ICN83_20435) | 33381..33947 | + | 567 | WP_212599237.1 | DUF736 family protein | - |
| ICN83_RS20395 (ICN83_20440) | 34061..35029 | + | 969 | WP_212599238.1 | SLOG family protein | - |
| ICN83_RS20400 (ICN83_20445) | 35058..35402 | + | 345 | WP_212599239.1 | hypothetical protein | - |
| ICN83_RS20405 (ICN83_20450) | 35460..35765 | + | 306 | WP_212599240.1 | hypothetical protein | - |
| ICN83_RS20410 (ICN83_20455) | 36019..36465 | + | 447 | WP_212599241.1 | hypothetical protein | - |
| ICN83_RS20415 (ICN83_20460) | 36636..36896 | + | 261 | WP_212599242.1 | hypothetical protein | - |
| ICN83_RS20420 (ICN83_20465) | 37055..37282 | + | 228 | WP_212599243.1 | DUF6290 family protein | Antitoxin Detail |
| ICN83_RS20425 (ICN83_20470) | 37266..37535 | + | 270 | WP_212599244.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ICN83_RS20430 (ICN83_20475) | 37519..37998 | + | 480 | WP_212599245.1 | hypothetical protein | - |
| ICN83_RS20435 (ICN83_20480) | 38504..38863 | + | 360 | WP_212599246.1 | single-stranded DNA-binding protein | - |
| ICN83_RS20440 (ICN83_20485) | 38916..39059 | + | 144 | WP_156417120.1 | hypothetical protein | - |
| ICN83_RS20445 (ICN83_20490) | 39056..39736 | + | 681 | WP_212599247.1 | hypothetical protein | - |
| ICN83_RS20450 (ICN83_20495) | 39947..40207 | - | 261 | WP_212599248.1 | hypothetical protein | - |
| ICN83_RS20455 (ICN83_20500) | 41051..41329 | + | 279 | WP_212599249.1 | hypothetical protein | - |
| ICN83_RS20460 (ICN83_20505) | 41319..43709 | + | 2391 | WP_212599250.1 | type IV secretion system DNA-binding domain-containing protein | - |
| ICN83_RS20465 (ICN83_20510) | 43894..44649 | + | 756 | WP_212599251.1 | hypothetical protein | Relaxase |
| ICN83_RS20470 (ICN83_20515) | 44646..47894 | + | 3249 | WP_212599252.1 | Multifunctional conjugation protein TraI | Relaxase |
| ICN83_RS20475 (ICN83_20520) | 47913..48545 | + | 633 | WP_212599253.1 | hypothetical protein | - |
| ICN83_RS20480 (ICN83_20525) | 48542..48907 | + | 366 | WP_212599254.1 | hypothetical protein | - |
| ICN83_RS20485 (ICN83_20530) | 48904..49362 | + | 459 | WP_244858197.1 | thermonuclease family protein | - |
| ICN83_RS20490 (ICN83_20535) | 49400..50134 | + | 735 | WP_212599255.1 | hypothetical protein | - |
| ICN83_RS20495 (ICN83_20540) | 50131..50334 | + | 204 | WP_212599256.1 | hypothetical protein | - |
| ICN83_RS20500 (ICN83_20545) | 50805..51533 | + | 729 | WP_212599257.1 | SprT-like domain-containing protein | - |
| ICN83_RS20505 (ICN83_20550) | 51656..51919 | + | 264 | WP_212599258.1 | hypothetical protein | - |
| ICN83_RS20510 (ICN83_20555) | 51953..55177 | - | 3225 | WP_212599259.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ICN83_RS20515 (ICN83_20560) | 55202..56650 | - | 1449 | WP_212599260.1 | conjugal transfer protein TraH | - |
| ICN83_RS20520 (ICN83_20565) | 56650..57510 | - | 861 | WP_212599261.1 | conjugal transfer protein TraF | - |
| ICN83_RS20525 (ICN83_20570) | 57491..57892 | - | 402 | WP_212599262.1 | hypothetical protein | - |
| ICN83_RS20530 (ICN83_20575) | 57926..58327 | - | 402 | WP_152998743.1 | hypothetical protein | - |
| ICN83_RS21385 | 58332..59198 | - | 867 | Protein_60 | conjugal transfer protein TraN | - |
| ICN83_RS20540 (ICN83_20585) | 61505..62218 | - | 714 | WP_212599274.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ICN83_RS20545 (ICN83_20590) | 62260..63324 | - | 1065 | WP_212599263.1 | conjugal transfer pilus assembly protein TraU | - |
| ICN83_RS20550 (ICN83_20595) | 63321..63977 | - | 657 | WP_212599264.1 | type-F conjugative transfer system protein TraW | - |
| ICN83_RS20555 (ICN83_20600) | 63974..64561 | - | 588 | WP_244858198.1 | S26 family signal peptidase | - |
| ICN83_RS20560 (ICN83_20605) | 64527..65102 | - | 576 | WP_212599265.1 | TrbI F-type domain-containing protein | - |
| ICN83_RS20565 (ICN83_20610) | 65095..65481 | - | 387 | WP_212599266.1 | hypothetical protein | - |
| ICN83_RS20570 (ICN83_20615) | 65478..68054 | - | 2577 | WP_212599267.1 | type IV secretion system protein TraC | - |
| ICN83_RS20575 (ICN83_20620) | 68054..68614 | - | 561 | WP_212599268.1 | hypothetical protein | - |
| ICN83_RS20580 (ICN83_20625) | 68679..68933 | - | 255 | WP_212599269.1 | hypothetical protein | - |
| ICN83_RS20585 (ICN83_20630) | 68933..69760 | - | 828 | WP_244858199.1 | DsbC family protein | - |
| ICN83_RS20590 (ICN83_20635) | 69775..71106 | - | 1332 | WP_212599172.1 | TraB/VirB10 family protein | - |
| ICN83_RS20595 (ICN83_20640) | 71109..71900 | - | 792 | WP_231728242.1 | type-F conjugative transfer system secretin TraK | - |
| ICN83_RS20600 (ICN83_20645) | 71912..72511 | - | 600 | WP_212599173.1 | type IV conjugative transfer system protein TraE | - |
| ICN83_RS20605 (ICN83_20650) | 72515..72799 | - | 285 | WP_058801098.1 | type IV conjugative transfer system protein TraL | - |
| ICN83_RS20610 (ICN83_20655) | 72857..73189 | - | 333 | WP_212599174.1 | TrbC/VirB2 family protein | - |
| ICN83_RS20615 (ICN83_20660) | 73480..73836 | + | 357 | WP_212599175.1 | hypothetical protein | - |
| ICN83_RS20620 (ICN83_20665) | 73965..74402 | + | 438 | WP_058801100.1 | helix-turn-helix transcriptional regulator | - |
| ICN83_RS20625 (ICN83_20670) | 74573..75295 | + | 723 | WP_244858188.1 | lytic transglycosylase domain-containing protein | - |
| ICN83_RS20630 (ICN83_20675) | 75677..76498 | + | 822 | WP_212599177.1 | helix-turn-helix domain-containing protein | - |
| ICN83_RS20635 (ICN83_20680) | 76754..77032 | + | 279 | WP_212599178.1 | WGR domain-containing protein | - |
| ICN83_RS20640 (ICN83_20685) | 77168..77362 | + | 195 | WP_244858189.1 | hypothetical protein | - |
| ICN83_RS20645 (ICN83_20690) | 77433..77690 | + | 258 | WP_244858190.1 | hypothetical protein | - |
| ICN83_RS20650 (ICN83_20695) | 77702..78217 | + | 516 | WP_212599181.1 | hypothetical protein | - |
| ICN83_RS20655 (ICN83_20700) | 78235..78900 | + | 666 | WP_212599182.1 | SOS response-associated peptidase family protein | - |
| ICN83_RS20660 (ICN83_20705) | 79008..79259 | + | 252 | WP_212599183.1 | hypothetical protein | - |
| ICN83_RS20665 (ICN83_20710) | 79314..79676 | + | 363 | WP_212599184.1 | hypothetical protein | - |
| ICN83_RS20670 (ICN83_20715) | 79687..80172 | + | 486 | WP_212599185.1 | hypothetical protein | - |
| ICN83_RS20675 (ICN83_20720) | 80355..81137 | - | 783 | WP_212599186.1 | hypothetical protein | - |
| ICN83_RS20680 (ICN83_20725) | 81225..81809 | - | 585 | WP_212599187.1 | helix-turn-helix domain-containing protein | - |
| ICN83_RS21390 (ICN83_20730) | 82455..83318 | + | 864 | Protein_90 | Tyrosine recombinase XerD | VF |
| ICN83_RS21395 | 83319..83558 | + | 240 | Protein_91 | Tyrosine recombinase XerD | VF |
| ICN83_RS20690 (ICN83_20735) | 83893..85365 | + | 1473 | WP_237233520.1 | IS21 family transposase ISBj11 | Transposase |
| ICN83_RS20695 (ICN83_20740) | 85362..86198 | + | 837 | WP_067182650.1 | IS21 family transposase ISRel5 | Transposase |
| ICN83_RS20705 (ICN83_20750) | 86648..87580 | + | 933 | WP_212599189.1 | putative HTH-type transcriptional regulator | Relaxase |
| ICN83_RS20710 (ICN83_20755) | 88050..89426 | + | 1377 | WP_212599190.1 | MFS transporter | - |
| ICN83_RS20715 (ICN83_20760) | 89423..91099 | + | 1677 | WP_212599191.1 | class I adenylate-forming enzyme family protein | - |
| ICN83_RS20720 (ICN83_20765) | 91092..92048 | + | 957 | WP_212599192.1 | nitronate monooxygenase family protein | - |
| ICN83_RS20725 (ICN83_20770) | 92045..92818 | + | 774 | WP_212599193.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| ICN83_RS20730 (ICN83_20775) | 92815..94329 | + | 1515 | WP_244858200.1 | aldehyde dehydrogenase family protein | - |
| ICN83_RS20735 (ICN83_20780) | 94326..95123 | + | 798 | WP_212599194.1 | alpha/beta hydrolase | - |
| ICN83_RS20740 (ICN83_20785) | 95154..97352 | + | 2199 | WP_212599195.1 | TonB-dependent receptor | - |
| ICN83_RS20745 (ICN83_20790) | 97416..98429 | + | 1014 | WP_212599196.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| ICN83_RS20750 (ICN83_20795) | 98481..99968 | + | 1488 | WP_212599197.1 | carotenoid oxygenase family protein | - |
| ICN83_RS20755 (ICN83_20800) | 100003..101214 | + | 1212 | WP_244858191.1 | acetyl-CoA C-acyltransferase | - |
| ICN83_RS20760 (ICN83_20805) | 101322..102527 | - | 1206 | WP_212599198.1 | hypothetical protein | - |
| ICN83_RS20765 (ICN83_20810) | 102579..103010 | - | 432 | WP_212599199.1 | DUF2924 domain-containing protein | - |
| ICN83_RS20770 (ICN83_20815) | 103007..103375 | - | 369 | WP_244858192.1 | DUF3489 domain-containing protein | - |
| ICN83_RS20775 (ICN83_20820) | 103613..104104 | + | 492 | WP_212599200.1 | MucR family transcriptional regulator | - |
| ICN83_RS20780 (ICN83_20825) | 104106..104399 | - | 294 | WP_212599201.1 | hypothetical protein | - |
| ICN83_RS20785 (ICN83_20830) | 104960..106188 | + | 1229 | WP_212599202.1 | IS3 family transposase ISGdi14 | Transposase |
| ICN83_RS20790 (ICN83_20835) | 106185..106337 | + | 153 | WP_212599283.1 | IS6 family transposase ISRsp9 | Transposase |
| ICN83_RS20795 (ICN83_20840) | 106528..108000 | + | 1473 | WP_244858193.1 | IS21 family transposase ISBj11 | Transposase |
| ICN83_RS20800 (ICN83_20845) | 107997..108833 | + | 837 | WP_019052403.1 | IS21 family transposase ISRel5 | Transposase |
| ICN83_RS20805 (ICN83_20850) | 109622..110644 | - | 1023 | WP_212597359.1 | IS110 family transposase ISCc4 | Transposase |
| ICN83_RS20810 (ICN83_20855) | 110749..111530 | + | 782 | Protein_115 | IS5 family transposase ISMra2 | Transposase |
| ICN83_RS20815 (ICN83_20860) | 111500..112411 | + | 912 | WP_212599204.1 | homoserine O-succinyltransferase | - |
| ICN83_RS20820 (ICN83_20865) | 112612..113112 | + | 501 | WP_212599205.1 | hypothetical protein | - |
| ICN83_RS20825 (ICN83_20870) | 113152..114515 | + | 1364 | WP_212599206.1 | IS3 family transposase ISSsp2 | Transposase |
| ICN83_RS20830 (ICN83_20875) | 114607..115553 | + | 947 | WP_212599207.1 | IS630 family transposase ISMex41 | Transposase |
| ICN83_RS20835 (ICN83_20880) | 115619..117682 | + | 2064 | WP_212599208.1 | efflux RND transporter permease subunit | - |
| ICN83_RS20840 (ICN83_20885) | 117734..118075 | - | 342 | WP_212599209.1 | hypothetical protein | - |
| ICN83_RS20845 (ICN83_20890) | 118102..118884 | - | 783 | WP_212599210.1 | DUF4019 domain-containing protein | - |
| ICN83_RS20850 (ICN83_20895) | 118881..119513 | - | 633 | WP_212599211.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| ICN83_RS20855 (ICN83_20900) | 119656..122625 | + | 2970 | WP_212599212.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| ICN83_RS20860 (ICN83_20905) | 122658..123035 | + | 378 | Protein_125 | efflux RND transporter permease subunit | - |
| ICN83_RS20865 (ICN83_20910) | 123143..123325 | + | 183 | WP_212599213.1 | hypothetical protein | - |
| ICN83_RS20870 (ICN83_20915) | 123329..124231 | + | 903 | WP_212599214.1 | hypothetical protein | - |
| ICN83_RS20875 (ICN83_20920) | 124228..124686 | + | 459 | WP_212599215.1 | hypothetical protein | - |
| ICN83_RS20880 (ICN83_20925) | 124778..125179 | + | 402 | WP_212599216.1 | GFA family protein | - |
| ICN83_RS20885 (ICN83_20935) | 125562..126194 | - | 633 | WP_212599217.1 | DJ-1/PfpI family protein | - |
| ICN83_RS20890 (ICN83_20940) | 126499..127665 | - | 1167 | WP_244858194.1 | tyrosine-type recombinase/integrase | - |
| ICN83_RS20895 (ICN83_20945) | 127662..128009 | - | 348 | WP_212599218.1 | hypothetical protein | - |
| ICN83_RS20900 (ICN83_20950) | 128180..129112 | + | 933 | WP_212599219.1 | hypothetical protein | - |
| ICN83_RS20905 (ICN83_20955) | 129341..130015 | + | 675 | WP_212599220.1 | ParA family protein | - |
| ICN83_RS20910 (ICN83_20960) | 130029..130352 | + | 324 | WP_212599221.1 | hypothetical protein | - |
| ICN83_RS20915 (ICN83_20965) | 130404..131495 | - | 1092 | WP_212599281.1 | replication initiator protein A | - |
| ICN83_RS20920 (ICN83_20970) | 132014..134230 | + | 2217 | WP_244858195.1 | strawberry notch family protein | - |
| ICN83_RS20925 (ICN83_20975) | 134321..135553 | + | 1233 | WP_212599222.1 | site-specific integrase | - |
| ICN83_RS20930 (ICN83_20980) | 135550..136905 | + | 1356 | WP_212599223.1 | tyrosine-type recombinase/integrase | - |
| ICN83_RS20935 (ICN83_20985) | 136902..137906 | + | 1005 | WP_212599224.1 | IS91 family transposase ISWz1 | Transposase |
| ICN83_RS20940 (ICN83_20990) | 137991..138317 | + | 327 | Protein_141 | methylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|