MGE detailed information
MGE type: Prophage MGE length: 66461 bp
Accession: NZ_CP063455 Location: 4388958..4455418 Organism: Pseudomonas protegens strain PC-578039 Replicon: chromosome
Accession: NZ_CP063455 Location: 4388958..4455418 Organism: Pseudomonas protegens strain PC-578039 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IP586_RS19710 | 4384845..4386398 | + | 1554 | WP_123394544.1 | N-acetylglucosamine-binding protein GbpA | - |
| IP586_RS19715 | 4386715..4388268 | + | 1554 | WP_123394545.1 | N-acetylglucosamine-binding protein GbpA | - |
| IP586_RS19720 | 4388413..4388961 | + | 549 | WP_102881623.1 | type II secretion system protein N | - |
| IP586_RS19725 | 4388958..4390877 | + | 1920 | WP_110652777.1 | Type II secretion system protein D | VF |
| IP586_RS19730 | 4390874..4392367 | + | 1494 | WP_267268497.1 | Type II secretion system protein E | VF |
| IP586_RS19735 | 4392370..4393587 | + | 1218 | WP_267268498.1 | Type II secretion system protein F | VF |
| IP586_RS19740 | 4393604..4394038 | + | 435 | WP_102864804.1 | Type II secretion system protein G | VF |
| IP586_RS19745 | 4394042..4394536 | + | 495 | WP_185021158.1 | hypothetical protein | VF |
| IP586_RS19750 | 4394520..4394906 | + | 387 | WP_249735684.1 | Type II secretion system protein I | VF |
| IP586_RS19755 | 4394903..4395502 | + | 600 | WP_102881628.1 | Type II secretion system protein J | VF |
| IP586_RS19760 | 4395495..4396382 | + | 888 | WP_267268499.1 | hypothetical protein | VF |
| IP586_RS19765 | 4396389..4397528 | + | 1140 | WP_267268500.1 | Type II secretion system protein L | VF |
| IP586_RS19770 | 4397532..4398032 | + | 501 | WP_242553876.1 | hypothetical protein | VF |
| IP586_RS19775 | 4398109..4398780 | - | 672 | WP_011062013.1 | Bax inhibitor-1/YccA family protein | - |
| IP586_RS19785 | 4399301..4399639 | + | 339 | WP_267268501.1 | hypothetical protein | - |
| IP586_RS19790 | 4399660..4400367 | + | 708 | WP_267268502.1 | SOS response-associated peptidase family protein | - |
| IP586_RS19795 | 4400510..4400728 | - | 219 | WP_102863228.1 | hypothetical protein | - |
| IP586_RS19800 | 4400825..4401325 | - | 501 | WP_267268503.1 | DUF2514 family protein | - |
| IP586_RS19805 | 4401322..4401969 | - | 648 | WP_267268504.1 | glycoside hydrolase family 19 protein | - |
| IP586_RS19810 | 4402028..4402855 | - | 828 | WP_267268505.1 | hypothetical protein | - |
| IP586_RS19815 | 4402855..4403145 | - | 291 | WP_267268506.1 | hypothetical protein | - |
| IP586_RS19820 | 4403142..4406234 | - | 3093 | WP_267268507.1 | host specificity protein J | - |
| IP586_RS19825 | 4406292..4406891 | - | 600 | WP_267268508.1 | tail assembly protein | - |
| IP586_RS19830 | 4407323..4408126 | - | 804 | WP_267268509.1 | hypothetical protein | - |
| IP586_RS19835 | 4408222..4409019 | - | 798 | WP_267268510.1 | KilA-N domain-containing protein | - |
| IP586_RS19840 | 4409016..4409933 | - | 918 | WP_267268511.1 | Rha family transcriptional regulator | - |
| IP586_RS19845 | 4410001..4410174 | - | 174 | WP_267268512.1 | Arc family DNA-binding protein | - |
| IP586_RS19850 | 4410300..4410599 | + | 300 | WP_267268513.1 | Arc family DNA-binding protein | - |
| IP586_RS19855 | 4410644..4411420 | - | 777 | WP_267268514.1 | Mov34/MPN/PAD-1 family protein | - |
| IP586_RS19860 | 4411423..4412106 | - | 684 | WP_267268515.1 | phage minor tail protein L | - |
| IP586_RS19865 | 4412156..4412542 | - | 387 | WP_267268516.1 | hypothetical protein | - |
| IP586_RS19870 | 4412539..4414311 | - | 1773 | WP_267268517.1 | hypothetical protein | - |
| IP586_RS19875 | 4414308..4414646 | - | 339 | WP_267268518.1 | phage tail protein | - |
| IP586_RS19880 | 4414701..4418159 | - | 3459 | WP_267268519.1 | phage tail tape measure protein | - |
| IP586_RS19885 | 4418170..4418463 | - | 294 | WP_267268520.1 | DUF1799 domain-containing protein | - |
| IP586_RS19890 | 4418481..4418870 | - | 390 | WP_267268521.1 | phage tail assembly chaperone | - |
| IP586_RS19895 | 4418874..4419530 | - | 657 | WP_267268522.1 | phage tail protein | - |
| IP586_RS19900 | 4419603..4420019 | - | 417 | WP_267268523.1 | phage tail terminator-like protein | - |
| IP586_RS19905 | 4420016..4420669 | - | 654 | WP_159892787.1 | hypothetical protein | - |
| IP586_RS19910 | 4420666..4421037 | - | 372 | WP_267268524.1 | hypothetical protein | - |
| IP586_RS19915 | 4421040..4421543 | - | 504 | WP_267268525.1 | hypothetical protein | - |
| IP586_RS19920 | 4421603..4422193 | - | 591 | WP_267268526.1 | hypothetical protein | - |
| IP586_RS19925 | 4422240..4423202 | - | 963 | WP_103407594.1 | major capsid protein | - |
| IP586_RS19930 | 4423215..4423943 | - | 729 | WP_267268527.1 | hypothetical protein | - |
| IP586_RS19935 | 4424024..4424488 | - | 465 | WP_267268528.1 | hypothetical protein | - |
| IP586_RS19940 | 4424521..4425606 | - | 1086 | WP_267268529.1 | minor capsid protein | - |
| IP586_RS19945 | 4425581..4426999 | - | 1419 | WP_267268530.1 | DUF4055 domain-containing protein | - |
| IP586_RS19950 | 4426996..4428297 | - | 1302 | WP_159892771.1 | terminase family protein | - |
| IP586_RS19955 | 4428284..4428745 | - | 462 | WP_159892769.1 | DUF2280 domain-containing protein | - |
| IP586_RS19960 | 4428778..4429401 | - | 624 | WP_267268531.1 | putative metallopeptidase | - |
| IP586_RS19965 | 4429475..4429669 | + | 195 | WP_159892765.1 | hypothetical protein | - |
| IP586_RS19970 | 4429730..4430074 | - | 345 | WP_159892763.1 | hypothetical protein | - |
| IP586_RS19975 | 4430071..4430400 | - | 330 | WP_103407585.1 | MFS transporter | - |
| IP586_RS19980 | 4430501..4430680 | + | 180 | WP_103407584.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| IP586_RS19985 | 4430751..4431368 | + | 618 | WP_267268532.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| IP586_RS19990 | 4431992..4432687 | - | 696 | WP_267268533.1 | hypothetical protein | - |
| IP586_RS19995 | 4432684..4433295 | - | 612 | WP_267268534.1 | recombination protein NinG | - |
| IP586_RS20000 | 4433292..4433879 | - | 588 | WP_267268535.1 | DUF1367 family protein | - |
| IP586_RS20005 | 4433872..4434690 | - | 819 | WP_267268536.1 | hypothetical protein | - |
| IP586_RS20010 | 4434647..4435570 | - | 924 | WP_267268537.1 | hypothetical protein | - |
| IP586_RS20015 | 4435608..4436402 | - | 795 | WP_267268538.1 | Rha family transcriptional regulator | - |
| IP586_RS20020 | 4436468..4437085 | - | 618 | WP_267268539.1 | hypothetical protein | - |
| IP586_RS20025 | 4437141..4437356 | - | 216 | WP_098963812.1 | YdaS family helix-turn-helix protein | - |
| IP586_RS20030 | 4437444..4438175 | + | 732 | WP_267268540.1 | helix-turn-helix transcriptional regulator | - |
| IP586_RS20035 | 4438280..4439023 | + | 744 | WP_267268541.1 | hypothetical protein | - |
| IP586_RS20040 | 4439020..4439856 | + | 837 | WP_267268542.1 | DUF3037 domain-containing protein | - |
| IP586_RS20045 | 4439918..4440502 | - | 585 | WP_267268543.1 | SPOR domain-containing protein | - |
| IP586_RS20050 | 4441280..4441711 | + | 432 | WP_102881677.1 | hypothetical protein | - |
| IP586_RS20055 | 4441891..4442322 | + | 432 | WP_267268544.1 | hypothetical protein | - |
| IP586_RS20060 | 4442319..4442510 | + | 192 | WP_041118603.1 | hypothetical protein | - |
| IP586_RS20065 | 4442507..4442707 | + | 201 | WP_041118604.1 | hypothetical protein | - |
| IP586_RS20070 | 4442704..4442877 | + | 174 | WP_011062073.1 | hypothetical protein | - |
| IP586_RS20075 | 4443016..4443903 | + | 888 | WP_267268545.1 | RecT family recombinase | - |
| IP586_RS20080 | 4443900..4445537 | + | 1638 | WP_267268546.1 | YqaJ viral recombinase family protein | - |
| IP586_RS20085 | 4445534..4446052 | + | 519 | WP_267268547.1 | hypothetical protein | - |
| IP586_RS20090 | 4446134..4446448 | + | 315 | WP_267268548.1 | hypothetical protein | - |
| IP586_RS20095 | 4446503..4447048 | - | 546 | WP_267268549.1 | dual specificity protein phosphatase family protein | - |
| IP586_RS20100 | 4447248..4447841 | + | 594 | WP_267268550.1 | hypothetical protein | - |
| IP586_RS20105 | 4447941..4448303 | - | 363 | WP_267268551.1 | hypothetical protein | - |
| IP586_RS20110 | 4448485..4448721 | + | 237 | Protein_3972 | nucleoid-associated protein | - |
| IP586_RS20115 | 4448735..4448953 | - | 219 | WP_267268552.1 | hypothetical protein | - |
| IP586_RS20120 | 4449249..4449425 | + | 177 | WP_267268553.1 | hypothetical protein | - |
| IP586_RS20125 | 4449477..4451420 | + | 1944 | WP_267268554.1 | DNA cytosine methyltransferase | - |
| IP586_RS20130 | 4451735..4452238 | + | 504 | WP_267268555.1 | hypothetical protein | - |
| IP586_RS20135 | 4452719..4452904 | + | 186 | WP_267268556.1 | hypothetical protein | - |
| IP586_RS20140 | 4452954..4453712 | + | 759 | WP_267268557.1 | phosphoadenosine phosphosulfate reductase | - |
| IP586_RS20145 | 4454125..4454367 | + | 243 | WP_267268558.1 | DUF4224 domain-containing protein | - |
| IP586_RS20150 | 4454369..4455418 | + | 1050 | WP_267268559.1 | hypothetical protein ; Integrase | Integrase |
| IP586_RS20155 | 4456042..4456614 | + | 573 | WP_123394553.1 | TetR/AcrR family transcriptional regulator | - |
| IP586_RS20160 | 4456611..4457588 | + | 978 | WP_267268560.1 | DMT family transporter | - |
| IP586_RS20165 | 4457827..4458663 | - | 837 | WP_102881717.1 | bifunctional allantoicase/(S)-ureidoglycine aminohydrolase | - |
| IP586_RS20170 | 4458849..4459733 | - | 885 | WP_110652785.1 | LysR family transcriptional regulator | - |
| IP586_RS20175 | 4459863..4460411 | + | 549 | WP_253085114.1 | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|