MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97304 bp
Accession: NZ_CP062218 Location: 3226057..3323360 Organism: Pseudomonas putida strain SY153 Replicon: chromosome
Accession: NZ_CP062218 Location: 3226057..3323360 Organism: Pseudomonas putida strain SY153 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGB31_RS14820 () | 3221574..3222083 | + | 510 | WP_009686322.1 | ProQ/FinO family protein | - |
| IGB31_RS14825 () | 3222201..3222632 | + | 432 | WP_054904191.1 | GNAT family N-acetyltransferase | - |
| IGB31_RS14830 () | 3222872..3223510 | + | 639 | WP_003251380.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| IGB31_RS14835 () | 3223516..3225339 | + | 1824 | WP_054904192.1 | excinuclease ABC subunit UvrC | - |
| IGB31_RS14840 () | 3225372..3225932 | + | 561 | WP_029885978.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| IGB31_RS14850 () | 3226299..3228242 | + | 1944 | WP_023435196.1 | Prophage integrase IntS ; Integrase | Integrase |
| IGB31_RS14855 () | 3228277..3228915 | - | 639 | WP_029885977.1 | substrate-binding domain-containing protein | - |
| IGB31_RS14860 () | 3229051..3229323 | + | 273 | WP_083199830.1 | FAD:protein FMN transferase | - |
| IGB31_RS14865 () | 3229418..3229855 | + | 438 | WP_042938790.1 | HIT family protein | - |
| IGB31_RS14870 () | 3229914..3230339 | + | 426 | WP_042938792.1 | hypothetical protein | - |
| IGB31_RS14875 () | 3230364..3231689 | - | 1326 | WP_065760461.1 | MATE family efflux transporter | - |
| IGB31_RS14880 () | 3231723..3232148 | - | 426 | WP_042938796.1 | MarR family transcriptional regulator | - |
| IGB31_RS14890 () | 3233751..3234878 | - | 1128 | WP_192439822.1 | ISL3 family transposase ISPpu12 | Transposase |
| IGB31_RS14895 () | 3234967..3235722 | - | 756 | WP_003290589.1 | IS21 family transposase ISUnCu3 | Transposase |
| IGB31_RS14900 () | 3235740..3237254 | - | 1515 | WP_019364253.1 | IS21 family transposase IS1491 | Transposase |
| IGB31_RS14905 () | 3237459..3237590 | - | 132 | Protein_2908 | ISL3 family transposase ISPst9 | Transposase |
| IGB31_RS14910 () | 3237605..3237922 | - | 318 | WP_032429244.1 | multidrug efflux SMR transporter | - |
| IGB31_RS14915 () | 3238157..3238450 | + | 294 | WP_009459591.1 | helix-turn-helix domain-containing protein | - |
| IGB31_RS14920 () | 3238472..3239362 | - | 891 | WP_023093405.1 | LysR family transcriptional regulator | - |
| IGB31_RS14925 () | 3239591..3239815 | + | 225 | WP_192439823.1 | hypothetical protein | - |
| IGB31_RS14930 () | 3239847..3241061 | - | 1215 | WP_192439824.1 | glutathione-independent formaldehyde dehydrogenase | - |
| IGB31_RS14935 () | 3241531..3242472 | - | 942 | WP_192439825.1 | LysR family transcriptional regulator | - |
| IGB31_RS14940 () | 3242963..3243394 | + | 432 | WP_192439826.1 | DUF488 domain-containing protein | - |
| IGB31_RS14945 () | 3243769..3245745 | + | 1977 | WP_192439827.1 | excinuclease ABC subunit UvrB | - |
| IGB31_RS14950 () | 3245896..3246801 | - | 906 | WP_058343364.1 | LysR family transcriptional regulator | - |
| IGB31_RS14955 () | 3246956..3247363 | + | 408 | WP_058343365.1 | nuclear transport factor 2 family protein | - |
| IGB31_RS14960 () | 3247365..3247973 | + | 609 | WP_192439828.1 | GNAT family acetyltransferase | - |
| IGB31_RS14965 () | 3247970..3248860 | + | 891 | WP_058343367.1 | carbon-nitrogen hydrolase family protein | - |
| IGB31_RS14970 () | 3249143..3249418 | + | 276 | WP_023093413.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| IGB31_RS14975 () | 3249478..3250587 | + | 1110 | WP_011871467.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| IGB31_RS14980 () | 3250631..3251029 | + | 399 | WP_023657205.1 | VOC family protein | - |
| IGB31_RS14985 () | 3251212..3252546 | + | 1335 | WP_058343368.1 | DUF3422 family protein | - |
| IGB31_RS14990 () | 3252605..3253435 | + | 831 | WP_007182551.1 | S-formylglutathione hydrolase | - |
| IGB31_RS14995 () | 3253452..3254759 | + | 1308 | WP_192439829.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| IGB31_RS15000 () | 3254811..3256124 | + | 1314 | WP_192439830.1 | replication-associated recombination protein A | - |
| IGB31_RS15005 () | 3256185..3258049 | + | 1865 | Protein_2928 | Na+/H+ antiporter NhaA | - |
| IGB31_RS15010 () | 3258075..3260726 | + | 2652 | WP_192439831.1 | UvrABC system protein A | VF |
| IGB31_RS15015 () | 3260807..3262645 | - | 1839 | WP_192439832.1 | TraI domain-containing protein | - |
| IGB31_RS15020 () | 3262962..3263588 | + | 627 | WP_100773638.1 | integrase | - |
| IGB31_RS15025 () | 3263601..3264233 | + | 633 | WP_100773637.1 | RES family NAD+ phosphorylase | - |
| IGB31_RS15030 () | 3264318..3264680 | + | 363 | WP_100773636.1 | DUF3742 family protein | - |
| IGB31_RS15035 () | 3264692..3266212 | - | 1521 | WP_100773635.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| IGB31_RS15040 () | 3266228..3266584 | - | 357 | WP_192439833.1 | hypothetical protein | - |
| IGB31_RS15045 () | 3266581..3267975 | - | 1395 | WP_100773634.1 | integrating conjugative element protein | - |
| IGB31_RS15050 () | 3267985..3268932 | - | 948 | WP_100773633.1 | TIGR03756 family integrating conjugative element protein | - |
| IGB31_RS15055 () | 3268929..3269375 | - | 447 | WP_100773632.1 | TIGR03757 family integrating conjugative element protein | - |
| IGB31_RS15060 () | 3269537..3270031 | - | 495 | WP_100773631.1 | DNA repair protein RadC | - |
| IGB31_RS15065 () | 3270210..3270974 | - | 765 | WP_100773630.1 | thioredoxin domain-containing protein | - |
| IGB31_RS15070 () | 3270988..3273855 | - | 2868 | WP_192439834.1 | conjugative transfer ATPase | - |
| IGB31_RS15075 () | 3273855..3274295 | - | 441 | WP_009459662.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| IGB31_RS15080 () | 3274276..3275694 | - | 1419 | WP_100773628.1 | TIGR03752 family integrating conjugative element protein | - |
| IGB31_RS15085 () | 3275684..3276610 | - | 927 | WP_100773627.1 | TIGR03749 family integrating conjugative element protein | - |
| IGB31_RS15090 () | 3276607..3277296 | - | 690 | WP_100773626.1 | TIGR03746 family integrating conjugative element protein | - |
| IGB31_RS15095 () | 3277293..3277691 | - | 399 | WP_100773625.1 | TIGR03750 family conjugal transfer protein | - |
| IGB31_RS15100 () | 3277703..3278062 | - | 360 | WP_100773624.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| IGB31_RS15105 () | 3278079..3278312 | - | 234 | WP_003050225.1 | TIGR03758 family integrating conjugative element protein | - |
| IGB31_RS15110 () | 3278309..3278689 | - | 381 | WP_100773623.1 | RAQPRD family integrative conjugative element protein | - |
| IGB31_RS15115 () | 3278903..3279370 | + | 468 | WP_043156233.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| IGB31_RS15120 () | 3279367..3279942 | + | 576 | WP_100773622.1 | PIN domain-containing protein | Toxin Detail |
| IGB31_RS15125 () | 3279960..3280874 | + | 915 | WP_100773621.1 | AAA family ATPase | - |
| IGB31_RS15130 () | 3280871..3281341 | + | 471 | WP_100773620.1 | hypothetical protein | - |
| IGB31_RS15135 () | 3281338..3281838 | + | 501 | WP_100773619.1 | HORMA domain containing protein | - |
| IGB31_RS15140 () | 3281838..3282740 | + | 903 | WP_100773618.1 | nucleotidyltransferase domain-containing protein | - |
| IGB31_RS15145 () | 3282777..3283502 | + | 726 | WP_100773617.1 | CBASS effector endonuclease NucC | - |
| IGB31_RS15150 () | 3283693..3286317 | + | 2625 | WP_100773616.1 | AAA family ATPase | - |
| IGB31_RS15155 () | 3286323..3287072 | - | 750 | WP_100773615.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| IGB31_RS15160 () | 3287069..3289258 | - | 2190 | WP_100773614.1 | type IV conjugative transfer system coupling protein TraD | - |
| IGB31_RS15165 () | 3289263..3289811 | - | 549 | WP_100773613.1 | integrating conjugative element protein | - |
| IGB31_RS15170 () | 3289808..3290398 | - | 591 | WP_100773612.1 | transglycosylase SLT domain-containing protein | - |
| IGB31_RS15175 () | 3290380..3291105 | - | 726 | WP_100773611.1 | TIGR03759 family integrating conjugative element protein | - |
| IGB31_RS15180 () | 3291120..3291761 | - | 642 | WP_100773610.1 | hypothetical protein | - |
| IGB31_RS15185 () | 3291758..3292357 | - | 600 | WP_100773663.1 | hypothetical protein | VF |
| IGB31_RS15190 () | 3292580..3294367 | + | 1788 | WP_100773609.1 | AAA family ATPase | - |
| IGB31_RS15195 () | 3294354..3296168 | + | 1815 | WP_023106345.1 | ATP-dependent helicase | - |
| IGB31_RS15200 () | 3296235..3297014 | - | 780 | WP_172606998.1 | hypothetical protein | - |
| IGB31_RS15205 () | 3297153..3299432 | - | 2280 | WP_100773608.1 | DEAD/DEAH box helicase | - |
| IGB31_RS15210 () | 3299570..3299875 | - | 306 | WP_100773607.1 | hypothetical protein | - |
| IGB31_RS15215 () | 3299965..3300285 | - | 321 | WP_100773606.1 | methyltransferase | - |
| IGB31_RS15220 () | 3300336..3301445 | - | 1110 | WP_100773605.1 | SAM-dependent methyltransferase | - |
| IGB31_RS15225 () | 3301510..3302157 | - | 648 | WP_100773604.1 | hypothetical protein | - |
| IGB31_RS15230 () | 3302234..3302494 | - | 261 | WP_100773603.1 | hypothetical protein | - |
| IGB31_RS15235 () | 3302511..3302918 | - | 408 | WP_100773602.1 | hypothetical protein | - |
| IGB31_RS15240 () | 3303021..3303344 | - | 324 | WP_100773601.1 | hypothetical protein | - |
| IGB31_RS15245 () | 3303439..3304128 | - | 690 | WP_100773600.1 | DUF3275 family protein | - |
| IGB31_RS15250 () | 3304224..3305051 | - | 828 | WP_100773599.1 | DUF945 domain-containing protein | - |
| IGB31_RS15255 () | 3305204..3306133 | - | 930 | WP_100773598.1 | DUF3577 domain-containing protein | - |
| IGB31_RS15260 () | 3307181..3307534 | - | 354 | WP_023106352.1 | DUF3085 domain-containing protein | - |
| IGB31_RS15265 () | 3307677..3308489 | - | 813 | WP_023106353.1 | hypothetical protein | - |
| IGB31_RS15270 () | 3309461..3309739 | - | 279 | WP_023106354.1 | hypothetical protein | - |
| IGB31_RS15275 () | 3309836..3310573 | - | 738 | WP_023106355.1 | hypothetical protein | - |
| IGB31_RS15280 () | 3310788..3311180 | - | 393 | WP_009876579.1 | hypothetical protein | - |
| IGB31_RS15285 () | 3311202..3311414 | - | 213 | WP_009876578.1 | hypothetical protein | - |
| IGB31_RS15290 () | 3312337..3314364 | - | 2028 | WP_100773596.1 | DNA topoisomerase III | - |
| IGB31_RS15295 () | 3314645..3315085 | - | 441 | WP_023106357.1 | single-stranded DNA-binding protein | - |
| IGB31_RS15300 () | 3315159..3315686 | - | 528 | WP_023106358.1 | DUF3158 family protein | - |
| IGB31_RS15305 () | 3315683..3316462 | - | 780 | WP_011871436.1 | TIGR03761 family integrating conjugative element protein | - |
| IGB31_RS15310 () | 3316793..3318043 | - | 1251 | WP_100773595.1 | hypothetical protein | - |
| IGB31_RS15315 () | 3318047..3318607 | - | 561 | WP_023106360.1 | DUF2857 domain-containing protein | - |
| IGB31_RS15320 () | 3318623..3320287 | - | 1665 | WP_023106361.1 | ParB family protein | - |
| IGB31_RS15325 () | 3320280..3320531 | - | 252 | WP_023106362.1 | hypothetical protein | - |
| IGB31_RS15330 () | 3320515..3321387 | - | 873 | WP_023106363.1 | hypothetical protein | VF |
| IGB31_RS15335 () | 3321431..3321643 | - | 213 | WP_012112310.1 | AlpA family transcriptional regulator | - |
| IGB31_RS15340 () | 3321762..3322508 | - | 747 | WP_100773594.1 | hypothetical protein | - |
| IGB31_RS15345 () | 3323460..3323975 | - | 516 | WP_054904193.1 | autoinducer binding domain-containing protein | - |
| IGB31_RS15350 () | 3324286..3324454 | + | 169 | Protein_2997 | IS66 family transposase | - |
| IGB31_RS15355 () | 3324773..3325056 | - | 284 | Protein_2998 | AAA family ATPase | - |
| IGB31_RS15360 () | 3325053..3325338 | - | 286 | Protein_2999 | AlpA family transcriptional regulator | - |
| IGB31_RS15365 () | 3325651..3326339 | - | 689 | Protein_3000 | LysR family transcriptional regulator | - |
| IGB31_RS15370 () | 3326916..3327578 | - | 663 | WP_192439835.1 | DUF1851 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|