MGE detailed information
MGE type: Conjugative plasmid MGE length: 88924 bp
Accession: NZ_CP062213 Location: 1..88924 Organism: Escherichia coli strain L3Cip3 Replicon: plasmid unnamed2
Accession: NZ_CP062213 Location: 1..88924 Organism: Escherichia coli strain L3Cip3 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFO96_RS24870 () | 46..1077 | + | 1032 | WP_000907873.1 | replication initiation protein | - |
| IFO96_RS24875 () | 1773..1913 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| IFO96_RS24880 () | 2146..2655 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| IFO96_RS24885 () | 2711..3313 | - | 603 | WP_001703912.1 | hypothetical protein | - |
| IFO96_RS24890 () | 3868..5130 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| IFO96_RS24895 () | 5386..6261 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| IFO96_RS24900 () | 6308..6640 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| IFO96_RS24905 () | 6595..7074 | + | 480 | Protein_7 | hypothetical protein | - |
| IFO96_RS24910 () | 7105..8676 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| IFO96_RS24915 () | 8696..9043 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| IFO96_RS24920 () | 9043..9720 | - | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| IFO96_RS24925 () | 10031..10696 | + | 666 | WP_149494528.1 | hypothetical protein | - |
| IFO96_RS24930 () | 11195..11497 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| IFO96_RS24935 () | 11494..12120 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| IFO96_RS24940 () | 12316..13587 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| IFO96_RS24945 () | 13587..14024 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| IFO96_RS24950 () | 14021..14269 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| IFO96_RS24955 () | 14687..15589 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| IFO96_RS24960 () | 15684..16019 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| IFO96_RS24965 () | 16357..17337 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| IFO96_RS24970 () | 17340..17762 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| IFO96_RS24975 () | 17766..18077 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| IFO96_RS24980 () | 18153..18836 | + | 684 | WP_000086127.1 | DNA methylase | - |
| IFO96_RS24985 () | 18837..19058 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| IFO96_RS24990 () | 19072..19506 | + | 435 | WP_000274484.1 | DUF1380 family protein | - |
| IFO96_RS24995 () | 19551..20321 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| IFO96_RS25000 () | 20857..21159 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| IFO96_RS25005 () | 21206..21628 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| IFO96_RS25010 () | 21625..21816 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| IFO96_RS25015 () | 21954..22217 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| IFO96_RS25020 () | 22601..23128 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| IFO96_RS25025 () | 23186..23419 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| IFO96_RS25030 () | 23478..25436 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| IFO96_RS25035 () | 25489..25923 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| IFO96_RS25040 () | 25920..26639 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| IFO96_RS25045 () | 26636..27232 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| IFO96_RS25050 () | 27694..28194 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| IFO96_RS25055 () | 28506..28574 | - | 69 | Protein_37 | pilus protein | - |
| IFO96_RS25060 () | 28923..29357 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| IFO96_RS25065 () | 29451..29717 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| IFO96_RS25070 () | 29894..30283 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| IFO96_RS25075 () | 30280..31182 | + | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| IFO96_RS25080 () | 31244..31450 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| IFO96_RS25085 () | 31481..31732 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| IFO96_RS25090 () | 31766..31963 | - | 198 | WP_001161106.1 | hypothetical protein | - |
| IFO96_RS25095 () | 32312..33160 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| IFO96_RS25100 () | 33246..33581 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| IFO96_RS25105 () | 33815..34147 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| IFO96_RS25110 () | 34158..36857 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| IFO96_RS25115 () | 36894..39185 | - | 2292 | WP_012783931.1 | hypothetical protein | - |
| IFO96_RS25120 () | 39178..40248 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| IFO96_RS25125 () | 40267..41475 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 41655..41712 | - | 58 | NuclAT_1 | - | - |
| - () | 41655..41712 | - | 58 | NuclAT_1 | - | - |
| - () | 41655..41712 | - | 58 | NuclAT_1 | - | - |
| - () | 41655..41712 | - | 58 | NuclAT_1 | - | - |
| IFO96_RS25130 () | 41782..42873 | - | 1092 | WP_000426061.1 | hypothetical protein | - |
| - () | 43076..43136 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43076..43136 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43076..43136 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 43076..43136 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| IFO96_RS25135 () | 43188..43340 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| IFO96_RS25140 () | 43412..43663 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| IFO96_RS25145 () | 43963..44259 | + | 297 | WP_011264046.1 | hypothetical protein | - |
| IFO96_RS25150 () | 44324..44500 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| IFO96_RS25155 () | 44892..45101 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| IFO96_RS25160 () | 45173..45835 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| IFO96_RS25165 () | 45906..48074 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| IFO96_RS25170 () | 48171..48755 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| IFO96_RS25175 () | 48784..49986 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| IFO96_RS25180 () | 49953..50567 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| IFO96_RS25185 () | 50567..53611 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| IFO96_RS25190 () | 53701..54501 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| IFO96_RS25195 () | 54485..54673 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| IFO96_RS25200 () | 54737..55141 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| IFO96_RS25205 () | 55192..55719 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| IFO96_RS25210 () | 55719..56423 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| IFO96_RS25215 () | 56423..57712 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| IFO96_RS25220 () | 57715..58698 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| IFO96_RS25225 () | 58709..59401 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| IFO96_RS25230 () | 59398..59745 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| IFO96_RS25235 () | 59763..63530 | - | 3768 | WP_012783940.1 | SogL protein | - |
| IFO96_RS25240 () | 63620..64171 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| IFO96_RS25245 () | 64186..64476 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| IFO96_RS25250 () | 64473..65621 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| IFO96_RS25255 () | 65618..66436 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| IFO96_RS25260 () | 66433..66891 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| IFO96_RS25265 () | 67285..67869 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| IFO96_RS25270 () | 67929..69131 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| IFO96_RS25275 () | 69216..70040 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| IFO96_RS25280 () | 70191..71345 | - | 1155 | WP_001139957.1 | integrase | - |
| IFO96_RS25285 () | 71329..71454 | + | 126 | Protein_83 | prepilin, shufflon protein A | - |
| IFO96_RS25290 () | 71503..71751 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| IFO96_RS25295 () | 71748..72059 | - | 312 | WP_001372183.1 | hypothetical protein | - |
| IFO96_RS25300 () | 72532..73902 | - | 1371 | WP_001393542.1 | hypothetical protein | VF |
| IFO96_RS25305 () | 73902..74558 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| IFO96_RS25310 () | 74543..75103 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| IFO96_RS25315 () | 75113..75727 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| IFO96_RS25320 () | 75745..76842 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| IFO96_RS25325 () | 76855..78408 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| IFO96_RS25330 () | 78419..78871 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| IFO96_RS25335 () | 78858..80153 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| IFO96_RS25340 () | 80146..81828 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| IFO96_RS25345 () | 81842..82279 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| IFO96_RS25350 () | 82279..83346 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| IFO96_RS25355 () | 84020..84472 | - | 453 | WP_001535696.1 | hypothetical protein | - |
| IFO96_RS25360 () | 84515..84769 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| IFO96_RS25365 () | 85037..85603 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| IFO96_RS25370 () | 85617..86300 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| IFO96_RS25375 () | 86554..87087 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| IFO96_RS25380 () | 87529..87816 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| IFO96_RS25385 () | 87734..87997 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|