MGE detailed information
MGE type: Mobilizable plasmid MGE length: 170880 bp
Accession: NZ_CP062115 Location: 1..170880 Organism: Aminobacter sp. SR38 Replicon: plasmid pSR3
Accession: NZ_CP062115 Location: 1..170880 Organism: Aminobacter sp. SR38 Replicon: plasmid pSR3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IG197_RS30965 () | 1..630 | + | 630 | WP_192320847.1 | sarcosine oxidase subunit gamma | - |
| IG197_RS30970 () | 605..1771 | + | 1167 | WP_192320849.1 | Rieske 2Fe-2S domain-containing protein | - |
| IG197_RS30975 () | 1859..2182 | + | 324 | WP_192320851.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| IG197_RS30980 () | 2263..3471 | + | 1209 | WP_192320853.1 | FAD-dependent oxidoreductase | - |
| IG197_RS30985 () | 3468..3973 | - | 506 | Protein_5 | IS630 family transposase ISGdi5 | Transposase |
| IG197_RS30990 () | 4497..5639 | - | 1143 | Protein_6 | IS110 family transposase ISMch4 | Transposase |
| IG197_RS30995 () | 5969..6601 | - | 633 | Protein_7 | IS110 family transposase ISGdi7 | Transposase |
| IG197_RS31000 () | 7089..7460 | - | 372 | WP_192320855.1 | IS630 family transposase ISGdi5 | Transposase |
| IG197_RS31005 () | 7873..8805 | - | 933 | WP_192320856.1 | LysR family transcriptional regulator | - |
| IG197_RS31010 () | 8951..9757 | + | 807 | WP_192320858.1 | transporter substrate-binding domain-containing protein | - |
| IG197_RS31015 () | 9921..10550 | + | 630 | WP_192320962.1 | amino acid ABC transporter permease | - |
| IG197_RS31020 () | 10534..11343 | + | 810 | WP_192320860.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| IG197_RS31025 () | 11417..12232 | + | 816 | WP_192320862.1 | aspartate/glutamate racemase family protein | - |
| IG197_RS31030 () | 12232..13416 | + | 1185 | WP_192320864.1 | Xaa-Pro peptidase family protein | - |
| IG197_RS31035 () | 13450..14637 | + | 1188 | WP_192320865.1 | M20 family metallopeptidase | - |
| IG197_RS31040 () | 14744..15919 | + | 1176 | WP_192320867.1 | cystathionine beta-lyase | - |
| IG197_RS31045 () | 16087..16548 | + | 462 | Protein_17 | IS6 family transposase ISRH1 | Transposase |
| IG197_RS31050 () | 16675..18327 | - | 1653 | WP_192316080.1 | IS66 family transposase ISRsp1 | Transposase |
| IG197_RS31055 () | 18375..18719 | - | 345 | WP_192316078.1 | IS66 family transposase ISRsp1 | Transposase |
| IG197_RS31060 () | 18716..19120 | - | 405 | WP_192316076.1 | IS66 family transposase ISRsp1 | Transposase |
| IG197_RS31065 () | 19171..20362 | + | 1192 | Protein_21 | IS3 family transposase | - |
| IG197_RS31070 () | 20376..20669 | - | 294 | Protein_22 | IS6 family transposase ISYps1 | Transposase |
| IG197_RS31075 () | 20754..21191 | - | 438 | WP_192320869.1 | PIN domain-containing protein | Toxin Detail |
| IG197_RS31080 () | 21188..21415 | - | 228 | WP_192320871.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| IG197_RS31085 () | 21774..22813 | - | 1040 | Protein_25 | IS110 family transposase ISRle1 | Transposase |
| IG197_RS31090 () | 22983..23402 | + | 420 | Protein_26 | IS6 family transposase ISRH1 | Transposase |
| IG197_RS31095 () | 23470..23670 | + | 201 | WP_192320873.1 | hypothetical protein | - |
| IG197_RS31100 () | 24717..26930 | - | 2214 | WP_192320875.1 | putative signaling protein | VF |
| IG197_RS31105 () | 27233..27454 | - | 222 | WP_192320877.1 | hypothetical protein | - |
| IG197_RS31110 () | 27818..28243 | + | 426 | WP_192320964.1 | MucR family transcriptional regulator | - |
| IG197_RS31115 () | 28317..28718 | - | 402 | WP_192320879.1 | GGDEF domain-containing protein | - |
| IG197_RS31120 () | 28706..28882 | - | 177 | WP_192320881.1 | hypothetical protein | - |
| IG197_RS31125 () | 29442..29786 | + | 345 | WP_192320883.1 | hypothetical protein | - |
| IG197_RS31130 () | 30031..30342 | - | 312 | Protein_34 | IS6 family transposase ISRH1 | Transposase |
| IG197_RS31135 () | 30459..30845 | - | 387 | Protein_35 | IS6 family transposase ISRH1 | Transposase |
| IG197_RS31140 () | 31147..32802 | - | 1656 | WP_192320885.1 | 60 kDa chaperonin 1 | VF |
| IG197_RS31145 () | 32867..33163 | - | 297 | WP_018427182.1 | co-chaperone GroES | - |
| IG197_RS31150 () | 33325..33443 | - | 119 | Protein_38 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| IG197_RS31155 () | 33512..34020 | + | 509 | Protein_39 | SMC-Scp complex subunit ScpB | - |
| IG197_RS31165 () | 34875..35110 | + | 236 | Protein_40 | IS630 family transposase ISRm10-1 | Transposase |
| IG197_RS31170 () | 35223..35996 | - | 774 | WP_192320887.1 | GntR family transcriptional regulator | - |
| IG197_RS31175 () | 36336..37970 | + | 1635 | WP_192320889.1 | ABC transporter substrate-binding protein | - |
| IG197_RS31180 () | 38112..39071 | + | 960 | WP_192320966.1 | ABC transporter permease | - |
| IG197_RS31185 () | 39071..39913 | + | 843 | WP_192320891.1 | ABC transporter permease | - |
| IG197_RS31190 () | 39927..41594 | + | 1668 | WP_192320968.1 | Glutathione import ATP-binding protein GsiA | VF |
| IG197_RS31195 () | 41591..42538 | + | 948 | WP_192320893.1 | NAD(P)-dependent oxidoreductase | - |
| IG197_RS31200 () | 42551..43309 | + | 759 | WP_192320895.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| IG197_RS31205 () | 43361..44809 | + | 1449 | WP_192320897.1 | dihydropyrimidinase | - |
| IG197_RS31210 () | 44948..45866 | - | 919 | Protein_49 | transposase | - |
| IG197_RS31215 () | 46130..47236 | + | 1107 | WP_192320899.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| IG197_RS31220 () | 47317..47895 | + | 579 | WP_192320901.1 | HupE/UreJ family protein | - |
| IG197_RS31225 () | 48134..49813 | + | 1680 | WP_192320903.1 | formate--tetrahydrofolate ligase | - |
| IG197_RS31230 () | 49848..50750 | + | 903 | WP_192320905.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| IG197_RS31235 () | 50758..51396 | + | 639 | WP_192320907.1 | response regulator transcription factor | - |
| IG197_RS31240 () | 51803..52951 | + | 1149 | WP_192320909.1 | substrate-binding protein | - |
| IG197_RS31245 () | 53107..53943 | + | 837 | WP_055980195.1 | branched-chain amino acid ABC transporter permease | - |
| IG197_RS31250 () | 53936..55762 | + | 1827 | WP_192320911.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| IG197_RS31255 () | 55775..56482 | + | 708 | WP_192320913.1 | ABC transporter ATP-binding protein | - |
| IG197_RS31260 () | 56521..57222 | + | 702 | WP_192320915.1 | Urease subunit alpha | VF |
| IG197_RS31265 () | 57215..58930 | + | 1716 | WP_192320917.1 | Urease subunit alpha | VF |
| IG197_RS31270 () | 58940..59560 | + | 621 | WP_192320919.1 | Urease accessory protein UreG | VF |
| IG197_RS31275 () | 59633..60400 | + | 768 | WP_192320921.1 | urease accessory protein UreD | - |
| IG197_RS31280 () | 60406..60900 | + | 495 | WP_055980179.1 | hypothetical protein | - |
| IG197_RS31285 () | 60893..61600 | + | 708 | WP_192320923.1 | urease accessory protein UreF | - |
| IG197_RS31290 () | 61616..62812 | + | 1197 | WP_192320925.1 | transporter substrate-binding domain-containing protein | - |
| IG197_RS31295 () | 62802..63422 | + | 621 | WP_192320927.1 | ANTAR domain-containing protein | - |
| IG197_RS31300 () | 63419..64978 | + | 1560 | WP_055980166.1 | ABC transporter substrate-binding protein | - |
| IG197_RS31305 () | 64996..65175 | - | 180 | WP_192320929.1 | hypothetical protein | - |
| IG197_RS31310 () | 65588..65977 | + | 390 | WP_192320931.1 | hypothetical protein | - |
| IG197_RS31315 () | 66129..66677 | - | 549 | Protein_70 | IS21 family transposase ISRel16 | Transposase |
| IG197_RS31320 () | 67925..68148 | + | 224 | Protein_71 | 2-oxoglutarate decarboxylase | - |
| IG197_RS31325 () | 68248..69648 | - | 1401 | WP_192320933.1 | helix-turn-helix transcriptional regulator | - |
| IG197_RS31330 () | 69773..71365 | + | 1593 | WP_192320934.1 | isocitrate lyase | - |
| IG197_RS31335 () | 71426..72553 | + | 1128 | WP_192320936.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| IG197_RS31340 () | 72609..73181 | + | 573 | WP_192320938.1 | S-(hydroxymethyl)glutathione synthase | - |
| IG197_RS31345 () | 73304..73471 | + | 168 | WP_192320940.1 | hypothetical protein | - |
| IG197_RS31350 () | 73655..74182 | - | 528 | WP_192320942.1 | IS481 family transposase ISGdi9 | Transposase |
| IG197_RS31355 () | 74206..75468 | + | 1263 | WP_192320944.1 | IS110 family transposase ISMex12 | Transposase |
| IG197_RS31360 () | 75720..76307 | - | 588 | Protein_79 | IS481 family transposase ISWpi4 | Transposase |
| IG197_RS31365 () | 76406..76606 | + | 201 | WP_192320946.1 | hypothetical protein | - |
| IG197_RS31370 () | 76689..76808 | - | 120 | WP_192320948.1 | BA14K family protein | - |
| IG197_RS31375 () | 76965..77264 | - | 300 | WP_192320950.1 | hypothetical protein | - |
| IG197_RS31380 () | 77490..77919 | - | 430 | Protein_83 | IS701 family transposase ISBj6_B | Transposase |
| IG197_RS31385 () | 77952..78233 | - | 282 | WP_192320952.1 | WGR domain-containing protein | - |
| IG197_RS31390 () | 78378..80300 | - | 1923 | WP_192320954.1 | Protein VirD4 | VF |
| IG197_RS31395 () | 80287..80502 | - | 216 | WP_192320956.1 | type IV conjugative transfer system coupling protein TraD | - |
| IG197_RS31400 () | 80507..80803 | - | 297 | WP_192320971.1 | TraC family protein | - |
| IG197_RS31405 () | 81061..84372 | + | 3312 | WP_192320957.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| IG197_RS31410 () | 84454..85524 | + | 1071 | WP_192320960.1 | conjugal transfer protein TraB | - |
| IG197_RS31415 () | 85539..85882 | + | 344 | Protein_90 | hypothetical protein | - |
| IG197_RS31420 () | 86040..86252 | - | 213 | WP_192320727.1 | helix-turn-helix domain-containing protein | - |
| IG197_RS31425 () | 86431..87135 | + | 705 | WP_192320729.1 | hypothetical protein | - |
| IG197_RS31430 () | 87286..88134 | + | 849 | WP_192320973.1 | ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB | - |
| IG197_RS31435 () | 88131..88790 | + | 660 | WP_192320731.1 | amino acid ABC transporter permease | - |
| IG197_RS31440 () | 88780..89439 | + | 660 | WP_192320733.1 | amino acid ABC transporter permease | - |
| IG197_RS31445 () | 89528..90277 | + | 750 | WP_192320735.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| IG197_RS31450 () | 90290..91330 | + | 1041 | WP_192320737.1 | succinylglutamate desuccinylase/aspartoacylase family protein | - |
| IG197_RS31455 () | 91583..93040 | - | 1458 | WP_192320975.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| IG197_RS31460 () | 93418..93675 | - | 258 | WP_192320739.1 | GNAT family N-acetyltransferase | - |
| IG197_RS31465 () | 93675..93917 | - | 243 | WP_192320741.1 | hypothetical protein | - |
| IG197_RS31470 () | 93937..94590 | - | 654 | WP_192320743.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| IG197_RS31475 () | 94633..95400 | - | 768 | WP_192320745.1 | autoinducer binding domain-containing protein | - |
| IG197_RS31480 () | 95775..96305 | + | 531 | WP_192320747.1 | molybdopterin-dependent oxidoreductase | - |
| IG197_RS31485 () | 96351..98735 | + | 2385 | WP_192320977.1 | putative signaling protein | VF |
| IG197_RS31490 () | 100526..101158 | + | 633 | WP_192320749.1 | 7-carboxy-7-deazaguanine synthase | - |
| IG197_RS31495 () | 101216..101698 | + | 483 | WP_192320751.1 | 6-carboxytetrahydropterin synthase | - |
| IG197_RS31500 () | 101698..102417 | + | 720 | WP_192320753.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| IG197_RS31505 () | 102939..103730 | - | 792 | WP_192320755.1 | hypothetical protein | - |
| IG197_RS31510 () | 103963..104442 | - | 480 | WP_192320756.1 | IS3 family transposase ISMra1 | Transposase |
| IG197_RS31515 () | 104563..105270 | - | 708 | WP_192320758.1 | putative transcriptional activator protein TraR | VF |
| IG197_RS31520 () | 106028..107230 | + | 1203 | WP_192320760.1 | Sporulation initiation inhibitor protein Soj | VF |
| IG197_RS31525 () | 107230..108279 | + | 1050 | WP_192320762.1 | plasmid partitioning protein RepB | - |
| IG197_RS31530 () | 108435..109643 | + | 1209 | WP_192320764.1 | replication initiation protein RepC | - |
| IG197_RS31535 () | 109871..110164 | + | 294 | WP_192320766.1 | transcriptional regulator | - |
| IG197_RS31540 () | 110258..111661 | - | 1404 | WP_192320768.1 | site-specific integrase | - |
| IG197_RS31545 () | 111849..112805 | + | 957 | WP_192320978.1 | DUF1403 family protein | - |
| IG197_RS31550 () | 112811..113500 | + | 690 | WP_192320770.1 | SMC-Scp complex subunit ScpB | - |
| IG197_RS31555 () | 113617..113811 | + | 195 | Protein_118 | transposase | - |
| IG197_RS31560 () | 113798..114616 | + | 819 | WP_192320771.1 | tyrosine-type recombinase/integrase | - |
| IG197_RS31565 () | 114613..115614 | + | 1002 | WP_192320773.1 | Tyrosine recombinase XerD | VF |
| IG197_RS31570 () | 115729..115854 | + | 126 | Protein_121 | transposase domain-containing protein | - |
| IG197_RS31575 () | 115975..117669 | - | 1695 | WP_192320775.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
| IG197_RS31580 () | 117666..118604 | - | 939 | WP_192320777.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| IG197_RS31585 () | 118765..119514 | - | 750 | WP_192320779.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| IG197_RS31590 () | 119536..120360 | - | 825 | WP_192320980.1 | CoA ester lyase | - |
| IG197_RS31595 () | 120354..121184 | - | 831 | WP_192320781.1 | MaoC family dehydratase N-terminal domain-containing protein | - |
| IG197_RS31600 () | 121186..122316 | - | 1131 | WP_192320782.1 | CoA transferase | - |
| IG197_RS31605 () | 122337..123494 | - | 1158 | WP_192320784.1 | acyl-CoA/acyl-ACP dehydrogenase | - |
| IG197_RS31610 () | 123553..124869 | - | 1317 | WP_192320785.1 | MmgE/PrpD family protein | - |
| IG197_RS31615 () | 125197..125808 | - | 612 | WP_192320787.1 | amino acid synthesis family protein | - |
| IG197_RS31620 () | 125830..126810 | - | 981 | WP_192320788.1 | flavin reductase family protein | - |
| IG197_RS31625 () | 126807..127622 | - | 816 | WP_192320790.1 | alpha/beta hydrolase | - |
| IG197_RS31630 () | 127615..128025 | - | 411 | WP_192320792.1 | RidA family protein | - |
| IG197_RS31635 () | 128189..129646 | + | 1458 | WP_192320982.1 | aldehyde dehydrogenase | - |
| IG197_RS31640 () | 129702..130736 | + | 1035 | WP_192320794.1 | LLM class flavin-dependent oxidoreductase | - |
| IG197_RS31645 () | 130843..131646 | + | 804 | WP_192320796.1 | crotonobetainyl-CoA hydratase | - |
| IG197_RS31650 () | 131651..132592 | + | 942 | WP_192320798.1 | 3-hydroxybutyryl-CoA dehydrogenase | - |
| IG197_RS31655 () | 132627..133679 | - | 1053 | WP_192320800.1 | HTH-type transcriptional regulator CdhR | VF |
| IG197_RS31660 () | 133793..134689 | + | 897 | WP_192320802.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| IG197_RS31665 () | 134689..135690 | + | 1002 | WP_192320804.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| IG197_RS31670 () | 135754..136860 | + | 1107 | WP_192320806.1 | extracellular solute-binding protein | - |
| IG197_RS31675 () | 136978..137817 | + | 840 | WP_192320984.1 | ABC transporter permease | - |
| IG197_RS31680 () | 137817..138620 | + | 804 | WP_192320807.1 | ABC transporter permease | - |
| IG197_RS31685 () | 138633..139793 | + | 1161 | WP_192320809.1 | Caffeyl-CoA reductase-Etf complex subunit CarC | VF |
| IG197_RS31690 () | 139790..141883 | + | 2094 | WP_192320811.1 | acetate--CoA ligase family protein | - |
| IG197_RS31695 () | 141893..143809 | + | 1917 | WP_192320813.1 | acetoacetate--CoA ligase | - |
| IG197_RS31700 () | 144259..145734 | + | 1476 | WP_192320815.1 | aldehyde dehydrogenase | - |
| IG197_RS31705 () | 145958..146422 | + | 465 | WP_192320986.1 | hypothetical protein | - |
| IG197_RS31710 () | 146508..147272 | + | 765 | Protein_149 | response regulator | - |
| IG197_RS31715 () | 147748..148386 | - | 639 | WP_192320817.1 | Transcriptional activator protein CzcR | VF |
| IG197_RS31720 () | 148773..149793 | + | 1021 | Protein_151 | IS110 family transposase ISAzs4 | Transposase |
| IG197_RS31725 () | 150048..152927 | - | 2880 | Protein_152 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| IG197_RS31730 () | 153140..153478 | + | 339 | WP_192320819.1 | hypothetical protein | - |
| IG197_RS31735 () | 153763..154809 | - | 1047 | WP_192320821.1 | GlxA family transcriptional regulator | - |
| IG197_RS31740 () | 155014..155331 | - | 318 | WP_192320823.1 | hypothetical protein | - |
| IG197_RS31745 () | 156132..157256 | - | 1125 | WP_192320988.1 | amidohydrolase | - |
| IG197_RS31750 () | 157288..158334 | - | 1047 | WP_192320825.1 | diaminopropionate ammonia-lyase | - |
| IG197_RS31755 () | 158448..158945 | + | 498 | WP_192320827.1 | Lrp/AsnC family transcriptional regulator | - |
| IG197_RS31760 () | 159034..159879 | + | 846 | WP_192320829.1 | transporter substrate-binding domain-containing protein | - |
| IG197_RS31765 () | 159955..160794 | + | 840 | WP_192320831.1 | transporter substrate-binding domain-containing protein | - |
| IG197_RS31770 () | 161257..161922 | + | 666 | WP_192320989.1 | ectoine/hydroxyectoine ABC transporter permease subunit EhuC | - |
| IG197_RS31775 () | 161925..162596 | + | 672 | WP_192320833.1 | ectoine/hydroxyectoine ABC transporter permease subunit EhuD | - |
| IG197_RS31780 () | 162647..163411 | + | 765 | WP_192320991.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| IG197_RS31785 () | 163386..164285 | - | 900 | WP_192320835.1 | LysR family transcriptional regulator | - |
| IG197_RS31790 () | 164423..165568 | + | 1146 | WP_192320837.1 | Xaa-Pro peptidase family protein | - |
| IG197_RS31795 () | 165568..166362 | + | 795 | WP_192320839.1 | arylmalonate decarboxylase | - |
| IG197_RS31800 () | 166367..167638 | + | 1272 | WP_192320841.1 | sarcosine oxidase subunit beta family protein | - |
| IG197_RS31805 () | 167650..167934 | + | 285 | WP_192320843.1 | sarcosine oxidase subunit delta | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|