MGE detailed information
MGE type: Prophage MGE length: 74021 bp
Accession: NZ_CP061749 Location: 2455745..2529765 Organism: Escherichia coli O15:H12 strain 2273-PO3 Replicon: chromosome
Accession: NZ_CP061749 Location: 2455745..2529765 Organism: Escherichia coli O15:H12 strain 2273-PO3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IED00_RS11800 () | 2451644..2452864 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| IED00_RS11805 () | 2452989..2453684 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| IED00_RS11810 () | 2453637..2454929 | - | 1293 | WP_071586743.1 | voltage-gated ClC-type chloride channel ClcB | - |
| IED00_RS11815 () | 2455088..2455702 | - | 615 | WP_000148706.1 | Tat proofreading chaperone DmsD | - |
| IED00_RS11820 () | 2455745..2456599 | - | 855 | WP_000526505.1 | dimethyl sulfoxide reductase anchor subunit | - |
| IED00_RS11825 () | 2456601..2457218 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| IED00_RS11830 () | 2457229..2459652 | - | 2424 | WP_072146368.1 | dimethyl sulfoxide reductase subunit A | - |
| IED00_RS11835 () | 2459713..2460525 | - | 813 | Protein_2332 | dimethyl sulfoxide reductase subunit A | - |
| IED00_RS11840 () | 2460570..2461043 | - | 474 | Protein_2333 | IS3 family transposase ISEc25 | Transposase |
| IED00_RS11845 () | 2461133..2462641 | - | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| IED00_RS11850 () | 2463314..2464050 | - | 737 | Protein_2335 | IS3 family transposase IS629 | Transposase |
| IED00_RS11855 () | 2464095..2464517 | + | 423 | Protein_2336 | IS3 family transposase | - |
| IED00_RS11860 () | 2464548..2464772 | - | 225 | Protein_2337 | hypothetical protein | - |
| IED00_RS11865 () | 2465349..2465504 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| IED00_RS11870 () | 2465963..2466241 | + | 279 | WP_001325325.1 | hypothetical protein | - |
| IED00_RS11875 () | 2466243..2467291 | + | 1049 | Protein_2340 | DUF968 domain-containing protein | - |
| IED00_RS11880 () | 2467305..2468057 | + | 753 | WP_001047135.1 | antitermination protein | - |
| IED00_RS11885 () | 2468335..2468424 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| IED00_RS11890 () | 2468479..2468691 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| IED00_RS11895 () | 2468992..2469207 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| IED00_RS25795 () | 2469571..2469741 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| IED00_RS11900 () | 2469905..2470602 | + | 698 | Protein_2346 | IS1 family transposase IS1X2 | Transposase |
| IED00_RS11905 () | 2470850..2471413 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| IED00_RS11910 () | 2471434..2472666 | - | 1233 | WP_191111681.1 | diguanylate cyclase DgcM | - |
| IED00_RS25800 () | 2472860..2472907 | + | 48 | WP_211180494.1 | protein YnaN | - |
| IED00_RS11915 () | 2472921..2473904 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| IED00_RS11920 () | 2474382..2475755 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| IED00_RS11925 () | 2475884..2476819 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| IED00_RS11930 () | 2476871..2478106 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| IED00_RS11935 () | 2478203..2478900 | + | 698 | Protein_2354 | IS1 family transposase IS1X2 | Transposase |
| IED00_RS11940 () | 2478891..2479100 | - | 210 | WP_097719230.1 | excisionase family protein | - |
| IED00_RS11945 () | 2479179..2479388 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2479204..2479382 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2479204..2479382 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2479204..2479382 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2479204..2479382 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| IED00_RS11950 () | 2479381..2479575 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| IED00_RS11955 () | 2479632..2480441 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| IED00_RS11960 () | 2480434..2483034 | - | 2601 | WP_001549183.1 | exodeoxyribonuclease VIII | - |
| IED00_RS11965 () | 2483136..2483411 | - | 276 | WP_000632297.1 | protein RacC | - |
| IED00_RS11970 () | 2483486..2483656 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| IED00_RS11975 () | 2483656..2483877 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| IED00_RS11980 () | 2484319..2484807 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| IED00_RS11985 () | 2484804..2484959 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| IED00_RS11990 () | 2485392..2485811 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| IED00_RS11995 () | 2485891..2486145 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| IED00_RS12000 () | 2486142..2486564 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| IED00_RS12005 () | 2486642..2487430 | + | 789 | WP_001396581.1 | hypothetical protein | - |
| IED00_RS12010 () | 2487437..2488183 | + | 747 | WP_016239945.1 | ATP-binding protein | - |
| IED00_RS12015 () | 2488206..2488967 | + | 762 | WP_000450660.1 | DUF1627 domain-containing protein | - |
| IED00_RS12020 () | 2488983..2489405 | + | 423 | WP_016239946.1 | DUF977 family protein | - |
| IED00_RS12025 () | 2489746..2491743 | + | 1998 | WP_001676522.1 | choline BCCT transporter BetT | - |
| IED00_RS12030 () | 2491807..2493084 | + | 1278 | WP_016239947.1 | DUF2254 domain-containing protein | - |
| IED00_RS12040 () | 2494620..2495432 | - | 813 | Protein_2375 | LysR family transcriptional regulator | - |
| IED00_RS12045 () | 2495429..2496121 | - | 693 | WP_000957772.1 | gamma-glutamylcyclotransferase | - |
| IED00_RS12050 () | 2496133..2497332 | - | 1200 | WP_001117226.1 | MFS transporter | - |
| IED00_RS12055 () | 2497513..2498210 | + | 698 | Protein_2378 | IS1 family transposase IS1X2 | Transposase |
| IED00_RS12060 () | 2498561..2498773 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| IED00_RS12065 () | 2498784..2498972 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| IED00_RS12070 () | 2498975..2499040 | + | 66 | WP_122985912.1 | hypothetical protein | - |
| IED00_RS12075 () | 2499120..2499275 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| IED00_RS12080 () | 2499447..2499620 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| IED00_RS12085 () | 2499772..2500182 | - | 411 | WP_074523751.1 | DUF1398 domain-containing protein | - |
| IED00_RS12090 () | 2500240..2500473 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| IED00_RS12095 () | 2500862..2501407 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| IED00_RS12100 () | 2501382..2503307 | + | 1926 | WP_001549229.1 | phage terminase large subunit family protein | - |
| IED00_RS12105 () | 2503304..2503510 | + | 207 | WP_000198149.1 | gpW family protein | - |
| IED00_RS12110 () | 2503507..2505108 | + | 1602 | WP_001324962.1 | phage portal protein | - |
| IED00_RS12115 () | 2505089..2506408 | + | 1320 | WP_000123333.1 | S49 family peptidase | - |
| IED00_RS12120 () | 2506418..2506750 | + | 333 | WP_001549228.1 | head decoration protein | - |
| IED00_RS12125 () | 2506806..2507831 | + | 1026 | WP_000063224.1 | major capsid protein | - |
| IED00_RS12130 () | 2507873..2508268 | + | 396 | WP_000158873.1 | DNA-packaging protein FI | - |
| IED00_RS12135 () | 2508280..2508633 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| IED00_RS12140 () | 2508645..2509223 | + | 579 | WP_000975060.1 | phage tail protein | - |
| IED00_RS12145 () | 2509220..2509615 | + | 396 | WP_000683143.1 | phage minor tail U family protein | - |
| IED00_RS12150 () | 2509623..2510363 | + | 741 | WP_001439072.1 | phage tail protein | - |
| IED00_RS12155 () | 2510379..2510801 | + | 423 | WP_000479139.1 | phage minor tail protein G | - |
| IED00_RS12160 () | 2510783..2511217 | + | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| IED00_RS12165 () | 2511210..2513789 | + | 2580 | WP_000840345.1 | phage tail tape measure protein | - |
| IED00_RS12170 () | 2513786..2514115 | + | 330 | WP_000847345.1 | phage tail protein | - |
| IED00_RS12175 () | 2514115..2514813 | + | 699 | WP_001152580.1 | phage minor tail protein L | - |
| IED00_RS12180 () | 2514819..2515562 | + | 744 | WP_000140764.1 | C40 family peptidase | - |
| IED00_RS12185 () | 2515499..2516101 | + | 603 | WP_000090905.1 | tail assembly protein | - |
| IED00_RS12190 () | 2516162..2519641 | + | 3480 | WP_000515751.1 | host specificity protein J | - |
| IED00_RS12195 () | 2519709..2520308 | + | 600 | WP_001233182.1 | Outer membrane protein X | VF |
| IED00_RS12200 () | 2520373..2523723 | + | 3351 | WP_000279189.1 | prophage tail fiber N-terminal domain-containing protein | - |
| IED00_RS12205 () | 2523723..2524298 | + | 576 | WP_000885610.1 | tail fiber assembly protein | - |
| IED00_RS12210 () | 2524396..2524986 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| IED00_RS12215 () | 2525303..2525536 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| IED00_RS12220 () | 2525605..2525718 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| IED00_RS12225 () | 2526321..2527604 | + | 1284 | Protein_2412 | MHS family MFS transporter YdfJ | - |
| IED00_RS12230 () | 2527693..2528526 | + | 834 | Protein_2413 | mannitol dehydrogenase family protein | - |
| IED00_RS12240 () | 2529857..2530489 | + | 633 | Protein_2415 | D-mannonate oxidoreductase | - |
| IED00_RS12245 () | 2530525..2530728 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| IED00_RS12250 () | 2530905..2531591 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| IED00_RS12255 () | 2531680..2532426 | - | 747 | WP_001324973.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| IED00_RS12260 () | 2532563..2534608 | + | 2046 | WP_001549225.1 | peptidyl-dipeptidase Dcp | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|