MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90788 bp
Accession: NZ_CP061205 Location: 3847752..3938539 Organism: Kordiimonas pumila strain N18 Replicon: chromosome
Accession: NZ_CP061205 Location: 3847752..3938539 Organism: Kordiimonas pumila strain N18 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICL80_RS17075 () | 3842997..3843929 | - | 933 | WP_194213930.1 | 2-dehydropantoate 2-reductase | - |
| ICL80_RS17080 () | 3844203..3846425 | - | 2223 | WP_194213931.1 | catalase/peroxidase HPI | - |
| ICL80_RS17085 () | 3846955..3847254 | + | 300 | WP_194213932.1 | transposase domain-containing protein | - |
| ICL80_RS17090 () | 3847752..3848771 | - | 1020 | WP_194213933.1 | IS481 family transposase ISSod13 | Transposase |
| ICL80_RS17095 () | 3849241..3850449 | - | 1209 | WP_194213934.1 | MFS transporter | - |
| ICL80_RS17100 () | 3850476..3851150 | - | 675 | WP_194213935.1 | alpha/beta fold hydrolase | - |
| ICL80_RS17105 () | 3851169..3851798 | - | 630 | WP_194213936.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| ICL80_RS17110 () | 3851866..3852885 | - | 1020 | WP_194213937.1 | Rieske (2Fe-2S) protein | - |
| ICL80_RS17115 () | 3852925..3853326 | - | 402 | WP_194213938.1 | RidA family protein | - |
| ICL80_RS17120 () | 3853443..3854174 | - | 732 | WP_194213939.1 | GntR family transcriptional regulator | - |
| ICL80_RS17125 () | 3854513..3856636 | + | 2124 | WP_194213940.1 | TonB-dependent receptor | - |
| ICL80_RS17130 () | 3856728..3857753 | + | 1026 | WP_194213941.1 | MBL fold metallo-hydrolase | - |
| ICL80_RS17135 () | 3857798..3858190 | + | 393 | WP_194213942.1 | hypothetical protein | - |
| ICL80_RS17140 () | 3858187..3858819 | - | 633 | WP_194213943.1 | cation diffusion facilitator family transporter | - |
| ICL80_RS17145 () | 3858899..3859342 | + | 444 | WP_194213944.1 | helix-turn-helix domain-containing protein | - |
| ICL80_RS17150 () | 3859500..3859676 | - | 177 | WP_194213945.1 | TonB-dependent receptor | - |
| ICL80_RS17155 () | 3859809..3860117 | + | 309 | Protein_3380 | IS481 family transposase ISVvu4 | Transposase |
| ICL80_RS17160 () | 3860192..3860593 | - | 402 | WP_194213946.1 | IS3 family transposase | - |
| ICL80_RS17165 () | 3860587..3860853 | - | 267 | WP_194213947.1 | IS3 family transposase ISMamg1 | Transposase |
| ICL80_RS17170 () | 3860884..3861228 | - | 345 | WP_194213948.1 | hypothetical protein | - |
| ICL80_RS17175 () | 3861213..3862133 | - | 921 | WP_194215927.1 | ThiF family adenylyltransferase | - |
| ICL80_RS17180 () | 3862133..3862639 | - | 507 | WP_194213949.1 | hypothetical protein | - |
| ICL80_RS17185 () | 3862639..3862965 | - | 327 | WP_194213950.1 | hypothetical protein | - |
| ICL80_RS17190 () | 3862962..3863672 | - | 711 | WP_194213951.1 | multiubiquitin domain-containing protein | - |
| ICL80_RS17195 () | 3863950..3864216 | + | 267 | WP_194213952.1 | helix-turn-helix domain-containing protein | - |
| ICL80_RS17200 () | 3864231..3864785 | + | 555 | WP_194213953.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ICL80_RS17205 () | 3864815..3866221 | + | 1407 | WP_194213954.1 | hypothetical protein | - |
| ICL80_RS17210 () | 3866395..3866601 | - | 207 | WP_194213955.1 | hypothetical protein | - |
| ICL80_RS17215 () | 3866936..3867145 | + | 210 | WP_194213956.1 | hypothetical protein | - |
| ICL80_RS17220 () | 3867142..3867522 | + | 381 | WP_194213957.1 | DUF2958 domain-containing protein | - |
| ICL80_RS17225 () | 3867548..3867976 | - | 429 | WP_194213958.1 | PIN domain nuclease | - |
| ICL80_RS17230 () | 3867973..3868167 | - | 195 | WP_194213959.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| ICL80_RS17235 () | 3868404..3868763 | + | 360 | WP_194213960.1 | hypothetical protein | - |
| ICL80_RS17240 () | 3868760..3869878 | + | 1119 | WP_194213961.1 | PcfJ domain-containing protein | - |
| ICL80_RS17245 () | 3869955..3870431 | + | 477 | WP_194213962.1 | single-stranded DNA-binding protein | - |
| ICL80_RS17250 () | 3870538..3871563 | + | 1026 | WP_194213963.1 | toprim domain-containing protein | - |
| ICL80_RS17255 () | 3871941..3872849 | + | 909 | WP_194215928.1 | DUF2493 domain-containing protein | - |
| ICL80_RS17260 () | 3872981..3873382 | + | 402 | WP_194213964.1 | hypothetical protein | - |
| ICL80_RS17265 () | 3873395..3874069 | - | 675 | WP_194213965.1 | GntR family transcriptional regulator | - |
| ICL80_RS17270 () | 3874116..3874328 | - | 213 | WP_194213966.1 | hypothetical protein | - |
| ICL80_RS17275 () | 3874710..3875036 | + | 327 | WP_194213967.1 | ribbon-helix-helix domain-containing protein | - |
| ICL80_RS17280 () | 3875029..3877026 | + | 1998 | WP_194213968.1 | type IV secretion system DNA-binding domain-containing protein | - |
| ICL80_RS17285 () | 3877030..3879918 | + | 2889 | WP_194213969.1 | relaxase domain-containing protein | - |
| ICL80_RS17290 () | 3880976..3881185 | - | 210 | WP_194213970.1 | helix-turn-helix transcriptional regulator | - |
| ICL80_RS17295 () | 3881134..3882345 | - | 1212 | WP_194213971.1 | type II toxin-antitoxin system HipA family toxin | - |
| ICL80_RS17300 () | 3882625..3882837 | + | 213 | WP_194213972.1 | antitoxin MazE family protein | - |
| ICL80_RS17305 () | 3882834..3883065 | + | 232 | Protein_3410 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ICL80_RS17310 () | 3883443..3884060 | + | 618 | WP_194213973.1 | AbiEi antitoxin N-terminal domain-containing protein | Antitoxin Detail |
| ICL80_RS17315 () | 3884053..3884916 | + | 864 | WP_194213974.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| ICL80_RS17320 () | 3885020..3885316 | + | 297 | WP_194213975.1 | hypothetical protein | - |
| ICL80_RS17325 () | 3885321..3888509 | - | 3189 | WP_194213976.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ICL80_RS17330 () | 3888509..3889918 | - | 1410 | WP_194213977.1 | conjugal transfer protein TraH | - |
| ICL80_RS17335 () | 3889915..3890796 | - | 882 | WP_194213978.1 | conjugal transfer protein TraF | - |
| ICL80_RS17340 () | 3890793..3891305 | - | 513 | WP_194213979.1 | S26 family signal peptidase | - |
| ICL80_RS17345 () | 3891305..3892066 | - | 762 | WP_194213980.1 | hypothetical protein | - |
| ICL80_RS17350 () | 3892059..3893204 | - | 1146 | WP_194213981.1 | conjugal transfer protein TraN | - |
| ICL80_RS17355 () | 3893885..3895873 | - | 1989 | WP_194213982.1 | hypothetical protein | - |
| ICL80_RS17360 () | 3895857..3896840 | - | 984 | WP_194213983.1 | TraU family protein | - |
| ICL80_RS17365 () | 3896833..3897366 | - | 534 | WP_194213984.1 | conjugal transfer protein TraW | - |
| ICL80_RS17370 () | 3897603..3900128 | - | 2526 | WP_194213985.1 | TraC family protein | - |
| ICL80_RS17375 () | 3900133..3900666 | - | 534 | WP_194213986.1 | TraV family lipoprotein | - |
| ICL80_RS17380 () | 3900650..3901885 | - | 1236 | WP_194213987.1 | TraB/VirB10 family protein | - |
| ICL80_RS17385 () | 3901882..3902679 | - | 798 | WP_194213988.1 | type-F conjugative transfer system secretin TraK | - |
| ICL80_RS17390 () | 3902660..3903286 | - | 627 | WP_194213989.1 | conjugal transfer protein | - |
| ICL80_RS17395 () | 3903279..3903545 | - | 267 | WP_194213990.1 | type IV conjugative transfer system protein TraL | - |
| ICL80_RS17400 () | 3903576..3903911 | - | 336 | WP_194213991.1 | hypothetical protein | - |
| ICL80_RS17405 () | 3903908..3904669 | - | 762 | WP_194213992.1 | DsbC family protein | - |
| ICL80_RS17410 () | 3905138..3905386 | + | 249 | WP_194213993.1 | helix-turn-helix domain-containing protein | - |
| ICL80_RS17415 () | 3905630..3905830 | + | 201 | Protein_3432 | IS3 family transposase ISSst1 | Transposase |
| ICL80_RS17420 () | 3905892..3906776 | + | 885 | WP_194213994.1 | IS481 family transposase ISRhba4 | Transposase |
| ICL80_RS17425 () | 3906843..3908852 | - | 2010 | WP_194213995.1 | serine hydrolase | - |
| ICL80_RS17430 () | 3909169..3911103 | - | 1935 | WP_194213996.1 | CocE/NonD family hydrolase | - |
| ICL80_RS17435 () | 3911231..3913810 | - | 2580 | WP_194213997.1 | TonB-dependent receptor | - |
| ICL80_RS17440 () | 3913888..3914982 | - | 1095 | WP_194213998.1 | FecR domain-containing protein | - |
| ICL80_RS17445 () | 3914975..3915568 | - | 594 | WP_194213999.1 | sigma-70 family RNA polymerase sigma factor | - |
| ICL80_RS17450 () | 3915824..3916486 | - | 663 | WP_194214000.1 | IS3 family transposase ISRhba2 | Transposase |
| ICL80_RS17455 () | 3916815..3918110 | - | 1296 | WP_194214001.1 | amino acid permease | - |
| ICL80_RS17460 () | 3918110..3918328 | - | 219 | WP_194214002.1 | hypothetical protein | - |
| ICL80_RS17465 () | 3918413..3918661 | - | 249 | Protein_3442 | IS481 family transposase ISRhba3 | Transposase |
| ICL80_RS17470 () | 3918739..3920367 | - | 1629 | WP_194214003.1 | serine hydrolase | - |
| ICL80_RS17475 () | 3920403..3922364 | - | 1962 | WP_194214004.1 | serine hydrolase | - |
| ICL80_RS17480 () | 3922686..3923834 | - | 1149 | WP_194214005.1 | DUF819 family protein | - |
| ICL80_RS17485 () | 3923930..3924907 | - | 978 | WP_194214006.1 | dipeptide epimerase | - |
| ICL80_RS17490 () | 3925121..3927355 | - | 2235 | WP_194214007.1 | TonB-dependent receptor | - |
| ICL80_RS17495 () | 3927400..3929013 | - | 1614 | WP_194214008.1 | amidohydrolase family protein | - |
| ICL80_RS17500 () | 3929380..3930069 | - | 690 | WP_194214009.1 | XRE family transcriptional regulator | - |
| ICL80_RS17505 () | 3930243..3931343 | - | 1101 | WP_194214010.1 | hypothetical protein | - |
| ICL80_RS17510 () | 3931554..3934955 | + | 3402 | WP_194214011.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| ICL80_RS17515 () | 3935008..3936177 | + | 1170 | WP_194214012.1 | FAD-binding oxidoreductase | - |
| ICL80_RS17520 () | 3936725..3936916 | + | 192 | WP_194215929.1 | DDE-type integrase/transposase/recombinase | - |
| ICL80_RS17525 () | 3937157..3938539 | - | 1383 | WP_194214013.1 | hypothetical protein ; Integrase | Integrase |
| ICL80_RS17530 () | 3939328..3940275 | + | 948 | WP_194214014.1 | O-antigen ligase family protein | - |
| ICL80_RS17535 () | 3940203..3940643 | - | 441 | WP_194214015.1 | hypothetical protein | - |
| ICL80_RS17540 () | 3940738..3941712 | - | 975 | WP_194214016.1 | GDP-L-fucose synthase | - |
| ICL80_RS17545 () | 3941712..3942833 | - | 1122 | WP_194214017.1 | GDP-mannose 4,6-dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|