MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 56053 bp
Accession: NZ_CP060448 Location: 1..56053 Organism: Xanthomonas citri pv. citri strain DAR72029 Replicon: plasmid pXAS56
Accession: NZ_CP060448 Location: 1..56053 Organism: Xanthomonas citri pv. citri strain DAR72029 Replicon: plasmid pXAS56
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H8Z73_RS23210 () | 1..1221 | + | 1221 | WP_011052942.1 | replication initiation protein | - |
| H8Z73_RS23215 () | 1587..5471 | - | 3885 | WP_203208794.1 | TAL effector repeat-containing protein | - |
| H8Z73_RS23220 () | 5717..5938 | - | 222 | WP_011052944.1 | hypothetical protein | - |
| H8Z73_RS23225 () | 6228..6764 | - | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| H8Z73_RS23230 () | 6754..6966 | - | 213 | WP_011052947.1 | hypothetical protein | - |
| H8Z73_RS23235 () | 6963..7214 | - | 252 | WP_125459571.1 | hypothetical protein | - |
| H8Z73_RS23240 () | 7237..7569 | - | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| H8Z73_RS23245 () | 7569..7826 | - | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| H8Z73_RS23250 () | 8032..8634 | + | 603 | WP_011052950.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| H8Z73_RS23255 () | 8618..8922 | + | 305 | Protein_9 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| H8Z73_RS23260 () | 9089..9247 | - | 159 | WP_011052952.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| H8Z73_RS23265 () | 9323..10490 | + | 1168 | Protein_11 | IS3 family transposase ISXac3 | Transposase |
| H8Z73_RS23270 () | 10517..13309 | - | 2793 | Protein_12 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| H8Z73_RS23275 () | 13354..14286 | - | 933 | Protein_13 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| H8Z73_RS23280 () | 14480..15535 | + | 1056 | WP_203179630.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| H8Z73_RS23285 () | 15662..16510 | + | 849 | WP_199822664.1 | type III effector | - |
| H8Z73_RS23290 () | 16631..16831 | - | 201 | WP_159066134.1 | IS66 family transposase ISPpu19 | Transposase |
| H8Z73_RS23295 () | 17020..17292 | - | 273 | WP_005918020.1 | IS66 family transposase ISAzo15 | Transposase |
| H8Z73_RS23300 () | 17286..17588 | - | 303 | WP_005923977.1 | IS66 family transposase ISDpr4 | Transposase |
| H8Z73_RS23305 () | 17728..18054 | - | 327 | WP_052462055.1 | TrbC/VirB2 family protein | - |
| H8Z73_RS23310 () | 18082..18372 | - | 291 | WP_017173636.1 | hypothetical protein | - |
| H8Z73_RS23315 () | 18607..18897 | - | 291 | WP_003490957.1 | hypothetical protein | - |
| H8Z73_RS23320 () | 19634..19948 | + | 315 | Protein_22 | hypothetical protein | - |
| H8Z73_RS23325 () | 19989..20912 | - | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| H8Z73_RS23330 () | 21127..21366 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| H8Z73_RS23335 () | 21366..21785 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| H8Z73_RS23340 () | 21790..24765 | + | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| H8Z73_RS23345 () | 24784..25482 | + | 699 | WP_015462628.1 | UPF0149 family protein | - |
| H8Z73_RS23350 () | 25527..25673 | + | 147 | Protein_28 | transposase | - |
| H8Z73_RS23355 () | 25772..28858 | - | 3087 | WP_203208795.1 | TAL effector repeat-containing protein | - |
| H8Z73_RS23360 () | 30412..31000 | + | 589 | Protein_30 | IS3 family transposase ISXac3 | Transposase |
| H8Z73_RS23365 () | 31031..31603 | - | 573 | WP_011053004.1 | Tn3 family transposase ISPsy42 | Transposase |
| H8Z73_RS23370 () | 31794..32054 | + | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| H8Z73_RS23375 () | 32051..32452 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| H8Z73_RS23380 () | 32477..32740 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| H8Z73_RS23385 () | 32747..33934 | + | 1188 | WP_040150073.1 | zeta toxin family protein | - |
| H8Z73_RS23390 () | 34214..35440 | + | 1227 | WP_015472949.1 | plasmid replication initiator protein | - |
| H8Z73_RS23395 () | 36245..37012 | + | 768 | WP_011052998.1 | ParA family protein | - |
| H8Z73_RS23400 () | 37026..38057 | + | 1032 | WP_011052997.1 | ParB/RepB/Spo0J family partition protein | - |
| H8Z73_RS23405 () | 38109..38438 | + | 330 | WP_011052996.1 | partition gene repressor | - |
| H8Z73_RS23410 () | 38442..38678 | + | 237 | WP_015462622.1 | Wgr family protein | - |
| H8Z73_RS23415 () | 38793..39880 | + | 1088 | WP_089504397.1 | IS3 family transposase ISXac2 | Transposase |
| H8Z73_RS23420 () | 40045..40260 | - | 216 | WP_155400515.1 | hypothetical protein | - |
| H8Z73_RS23425 () | 40650..41817 | - | 1168 | Protein_43 | IS3 family transposase ISXac3 | Transposase |
| H8Z73_RS23430 () | 42136..42354 | + | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| H8Z73_RS23435 () | 42351..42677 | + | 327 | WP_015462614.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| H8Z73_RS23440 () | 42731..45706 | - | 2976 | WP_058967967.1 | Multifunctional conjugation protein TraI | Relaxase |
| H8Z73_RS23445 () | 45720..47295 | - | 1576 | Protein_47 | type IV secretion system DNA-binding domain-containing protein | - |
| H8Z73_RS23450 () | 47554..47895 | - | 342 | WP_031425612.1 | hypothetical protein | - |
| H8Z73_RS23455 () | 48094..48708 | - | 615 | WP_040150107.1 | hypothetical protein | - |
| H8Z73_RS23460 () | 48824..49117 | - | 294 | WP_040150110.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| H8Z73_RS23465 () | 49114..49383 | - | 270 | WP_003490597.1 | hypothetical protein | - |
| H8Z73_RS23470 () | 49479..49874 | - | 396 | WP_003490599.1 | hypothetical protein | - |
| H8Z73_RS23475 () | 50361..51528 | - | 1168 | Protein_53 | IS3 family transposase ISXac3 | Transposase |
| H8Z73_RS23480 () | 51555..51932 | + | 378 | WP_059022860.1 | hypothetical protein | - |
| H8Z73_RS23485 () | 51929..52636 | + | 708 | WP_039587580.1 | hypothetical protein | - |
| H8Z73_RS23490 () | 52685..53038 | + | 354 | WP_039700904.1 | hypothetical protein | - |
| H8Z73_RS23495 () | 53433..53642 | - | 210 | WP_015462608.1 | helix-turn-helix domain-containing protein | - |
| H8Z73_RS23500 () | 53639..53947 | - | 309 | WP_015462607.1 | hypothetical protein | - |
| H8Z73_RS23505 () | 54403..55029 | + | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| H8Z73_RS23510 () | 55026..55349 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| H8Z73_RS23515 () | 55492..55806 | + | 315 | WP_173426676.1 | partition protein C | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|