MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90714 bp
Accession: NZ_CP060401 Location: 83179..173892 Organism: Xenorhabdus nematophila strain SII Replicon: chromosome
Accession: NZ_CP060401 Location: 83179..173892 Organism: Xenorhabdus nematophila strain SII Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H8F46_RS00400 () | 78763..80520 | - | 1758 | WP_038220586.1 | type VI secretion system baseplate subunit TssF | - |
| H8F46_RS00405 () | 80834..81232 | + | 399 | WP_038220587.1 | TIGR03757 family integrating conjugative element protein | - |
| H8F46_RS00410 () | 81229..82195 | + | 967 | Protein_80 | TIGR03756 family integrating conjugative element protein | - |
| H8F46_RS00415 () | 82208..83647 | + | 1440 | WP_038220588.1 | integrating conjugative element protein | - |
| H8F46_RS00420 () | 83651..83995 | + | 345 | WP_038220589.1 | hypothetical protein | - |
| H8F46_RS00425 () | 83992..85506 | + | 1515 | WP_038220590.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| H8F46_RS00430 () | 86013..86378 | + | 366 | Protein_84 | 5-enolpyruvylshikimate-3-phosphate synthase | - |
| H8F46_RS00435 () | 86574..86813 | + | 240 | Protein_85 | 5-enolpyruvylshikimate-3-phosphate synthase | - |
| H8F46_RS00440 () | 86830..87240 | - | 411 | WP_013184170.1 | IS630 family transposase ISOt3 | Transposase |
| H8F46_RS00445 () | 87338..87661 | - | 324 | WP_013185205.1 | IS630 family transposase ISTcSa | Transposase |
| H8F46_RS00450 () | 87711..88475 | + | 765 | WP_119365201.1 | hypothetical protein | - |
| H8F46_RS00455 () | 88536..89309 | + | 774 | WP_081480223.1 | phytanoyl-CoA dioxygenase family protein | - |
| H8F46_RS00460 () | 89313..91058 | + | 1746 | WP_038220301.1 | thiamine pyrophosphate-binding protein | - |
| H8F46_RS00465 () | 91072..92262 | + | 1191 | WP_041976370.1 | multidrug effflux MFS transporter | - |
| H8F46_RS00470 () | 92314..93102 | + | 789 | WP_038220302.1 | SDR family oxidoreductase | - |
| H8F46_RS00475 () | 94177..95091 | + | 915 | WP_041976373.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| H8F46_RS00480 () | 95254..100284 | + | 5031 | WP_113935487.1 | ATP-dependent RecD-like DNA helicase | VF |
| H8F46_RS00485 () | 100281..101804 | + | 1524 | WP_013185168.1 | hypothetical protein | - |
| H8F46_RS00490 () | 102105..103145 | + | 1041 | WP_013141539.1 | IS481 family transposase ISVvu4 | Transposase |
| H8F46_RS00495 () | 103204..103704 | - | 501 | Protein_97 | Tyrosine recombinase XerC ; Integrase | Integrase |
| H8F46_RS00500 () | 104594..104875 | + | 282 | Protein_98 | transposase | - |
| H8F46_RS00505 () | 104928..105305 | + | 378 | Protein_99 | IS630 family transposase | - |
| H8F46_RS00510 () | 105870..106753 | + | 884 | Protein_100 | LysR family transcriptional regulator | - |
| H8F46_RS00515 () | 106906..107760 | - | 855 | WP_081990853.1 | nucleoside transporter | - |
| H8F46_RS00520 () | 107853..109366 | - | 1514 | Protein_102 | IS3 family transposase ISSde10 | Transposase |
| H8F46_RS00525 () | 109952..110824 | + | 873 | WP_013185710.1 | IS630 family transposase ISPa47 | Transposase |
| H8F46_RS00530 () | 111154..111579 | - | 426 | WP_012987825.1 | type II toxin-antitoxin system VapC family toxin | - |
| H8F46_RS00535 () | 111579..111833 | - | 255 | WP_010846804.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| H8F46_RS00540 () | 112058..112387 | + | 330 | WP_010846805.1 | type I toxin-antitoxin system SymE family toxin | - |
| H8F46_RS00545 () | 112528..112866 | + | 339 | WP_010846806.1 | SymE family type I addiction module toxin | - |
| H8F46_RS00550 () | 112969..113256 | + | 288 | WP_013184681.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H8F46_RS00555 () | 113267..113551 | + | 285 | WP_010846808.1 | putative addiction module antidote protein | Antitoxin Detail |
| H8F46_RS00560 () | 113634..114017 | - | 384 | WP_041976221.1 | hypothetical protein | - |
| H8F46_RS00565 () | 114138..114347 | - | 210 | WP_013184683.1 | hypothetical protein | - |
| H8F46_RS00570 () | 114470..115501 | - | 1032 | WP_119365216.1 | IS630 family transposase ISEc33 | Transposase |
| H8F46_RS00575 () | 115583..115780 | + | 198 | WP_081990858.1 | replication initiation protein | - |
| H8F46_RS00580 () | 115830..116444 | - | 615 | WP_010849037.1 | DUF4158 domain-containing protein | - |
| H8F46_RS00585 () | 116652..117257 | + | 606 | WP_113935522.1 | Tn3 family transposase TnBth3 | Transposase |
| H8F46_RS00590 () | 117333..117587 | + | 255 | WP_052145619.1 | replication initiation protein | - |
| H8F46_RS00595 () | 117670..118554 | - | 885 | WP_052453850.1 | TauD/TfdA family dioxygenase | - |
| H8F46_RS00600 () | 118725..119765 | + | 1041 | WP_187007073.1 | IS630 family transposase ISPlu16 | Transposase |
| H8F46_RS00605 () | 119774..120484 | + | 711 | Protein_119 | ISAs1 family transposase ISAeme1 | Transposase |
| H8F46_RS00610 () | 121463..123898 | - | 2436 | WP_119365202.1 | toprim domain-containing protein | - |
| H8F46_RS00615 () | 124008..124214 | - | 207 | WP_038220850.1 | AlpA family transcriptional regulator | - |
| H8F46_RS00620 () | 124354..125118 | - | 765 | Protein_122 | Prophage integrase IntS ; Integrase | Integrase |
| H8F46_RS00625 () | 125140..125550 | - | 411 | WP_013184170.1 | IS630 family transposase ISOt3 | Transposase |
| H8F46_RS00630 () | 125648..125971 | - | 324 | WP_013185205.1 | IS630 family transposase ISTcSa | Transposase |
| H8F46_RS00635 () | 126398..127285 | + | 888 | WP_038220682.1 | Tyrosine-protein kinase YwqD | VF |
| H8F46_RS00640 () | 127282..127671 | + | 390 | WP_038220681.1 | hypothetical protein | - |
| H8F46_RS00645 () | 127655..129031 | + | 1377 | WP_041978425.1 | replicative DNA helicase | - |
| H8F46_RS00650 () | 129035..130618 | + | 1584 | WP_038220684.1 | ParB family protein | - |
| H8F46_RS00655 () | 130699..131280 | + | 582 | WP_038220680.1 | DUF2857 domain-containing protein | - |
| H8F46_RS00660 () | 131301..131558 | + | 258 | WP_013185059.1 | hypothetical protein | - |
| H8F46_RS00665 () | 131648..132871 | + | 1224 | WP_119365204.1 | helix-turn-helix domain-containing protein | - |
| H8F46_RS00670 () | 133340..134065 | + | 726 | WP_038220812.1 | TIGR03761 family integrating conjugative element protein | - |
| H8F46_RS00675 () | 134067..136061 | + | 1995 | WP_038220810.1 | DNA topoisomerase III | - |
| H8F46_RS00680 () | 136105..136305 | - | 201 | WP_038220807.1 | hypothetical protein | - |
| H8F46_RS00685 () | 136338..136802 | + | 465 | WP_038220805.1 | DUF3577 domain-containing protein | - |
| H8F46_RS00690 () | 136881..137090 | + | 210 | WP_010846537.1 | hypothetical protein | - |
| H8F46_RS00695 () | 137108..137620 | + | 513 | WP_038220803.1 | single-stranded DNA-binding protein | - |
| H8F46_RS00700 () | 137741..140221 | - | 2481 | WP_052453860.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| H8F46_RS00705 () | 140741..141019 | + | 279 | WP_187007112.1 | helix-turn-helix domain-containing protein | - |
| H8F46_RS00710 () | 141125..141661 | + | 537 | WP_038220801.1 | hypothetical protein | VF |
| H8F46_RS00715 () | 141658..142353 | + | 696 | WP_038220799.1 | TIGR03759 family integrating conjugative element protein | - |
| H8F46_RS00720 () | 142335..142874 | + | 540 | WP_038220797.1 | integrating conjugative element protein | - |
| H8F46_RS00725 () | 142871..144934 | + | 2064 | WP_038220795.1 | type IV conjugative transfer system coupling protein TraD | - |
| H8F46_RS00730 () | 144944..145702 | + | 759 | WP_038220794.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| H8F46_RS00735 () | 145878..146744 | + | 867 | WP_038220793.1 | hypothetical protein | - |
| H8F46_RS00740 () | 146862..147554 | - | 693 | WP_119365205.1 | hypothetical protein | - |
| H8F46_RS00745 () | 147703..148032 | + | 330 | WP_038220947.1 | RAQPRD family integrative conjugative element protein | - |
| H8F46_RS00750 () | 148029..148265 | + | 237 | WP_013185221.1 | TIGR03758 family integrating conjugative element protein | - |
| H8F46_RS00755 () | 148301..148678 | + | 378 | WP_038220949.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| H8F46_RS00760 () | 148689..149063 | + | 375 | WP_041976408.1 | TIGR03750 family conjugal transfer protein | - |
| H8F46_RS00765 () | 149060..149717 | + | 658 | Protein_151 | TIGR03746 family integrating conjugative element protein | - |
| H8F46_RS00770 () | 149714..150550 | + | 837 | WP_038221132.1 | TIGR03749 family integrating conjugative element protein | - |
| H8F46_RS00775 () | 150540..151970 | + | 1431 | WP_041976411.1 | TIGR03752 family integrating conjugative element protein | - |
| H8F46_RS00780 () | 151970..152326 | + | 357 | WP_038221017.1 | hypothetical protein | - |
| H8F46_RS00785 () | 152314..152715 | + | 402 | WP_038221019.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| H8F46_RS00790 () | 152715..155486 | + | 2772 | WP_119365206.1 | conjugative transfer ATPase | - |
| H8F46_RS00795 () | 155572..155904 | - | 333 | WP_013185148.1 | DUF600 family protein | - |
| H8F46_RS00800 () | 155904..160523 | - | 4620 | WP_052453837.1 | 16S rRNA endonuclease CdiA | VF |
| H8F46_RS00805 () | 160572..162269 | - | 1698 | WP_187007074.1 | Hemolysin transporter protein ShlB | VF |
| H8F46_RS00810 () | 162732..165995 | + | 3264 | WP_187007075.1 | Invasin | VF |
| H8F46_RS00815 () | 166211..167003 | - | 793 | Protein_161 | hypothetical protein | - |
| H8F46_RS00820 () | 167176..167724 | - | 549 | WP_013185153.1 | hypothetical protein | - |
| H8F46_RS00825 () | 167730..172160 | - | 4431 | WP_041976360.1 | AHH domain-containing protein | - |
| H8F46_RS00830 () | 172173..172592 | - | 420 | WP_038220820.1 | DUF1795 domain-containing protein | - |
| H8F46_RS00835 () | 172691..174778 | - | 2088 | WP_041976363.1 | type VI secretion system tip protein VgrG | - |
| H8F46_RS00840 () | 175204..176412 | + | 1209 | WP_119365208.1 | IS256 family transposase | - |
| H8F46_RS00845 () | 176431..176670 | - | 240 | WP_038220708.1 | hypothetical protein | - |
| H8F46_RS00850 () | 176759..176971 | - | 213 | WP_038220707.1 | AlpA family transcriptional regulator | - |
| H8F46_RS00855 () | 177197..178411 | - | 1215 | WP_038220706.1 | tyrosine-type recombinase/integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|