MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74236 bp
Accession: NZ_CP060286 Location: 3281367..3355602 Organism: Caproiciproducens sp. 7D4C2 Replicon: chromosome
Accession: NZ_CP060286 Location: 3281367..3355602 Organism: Caproiciproducens sp. 7D4C2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCR03_RS16285 () | 3276553..3277731 | - | 1179 | WP_187035390.1 | 2-hydroxyacyl-CoA dehydratase family protein | - |
| HCR03_RS16290 () | 3277834..3278517 | + | 684 | WP_013485809.1 | Crp/Fnr family transcriptional regulator | - |
| HCR03_RS16295 () | 3278638..3279297 | - | 660 | WP_187035392.1 | Crp/Fnr family transcriptional regulator | - |
| HCR03_RS16300 () | 3279396..3280100 | + | 705 | WP_187035394.1 | 4Fe-4S binding protein | - |
| HCR03_RS16305 () | 3280116..3280430 | + | 315 | WP_187035396.1 | cupin domain-containing protein | - |
| HCR03_RS16310 () | 3280452..3280616 | + | 165 | WP_187035399.1 | rubredoxin | - |
| HCR03_RS16315 () | 3280637..3282268 | + | 1632 | WP_187035401.1 | hydroxylamine reductase | - |
| HCR03_RS16320 () | 3282291..3282479 | + | 189 | WP_187035403.1 | ferredoxin | - |
| HCR03_RS16325 () | 3282726..3283247 | - | 522 | WP_159033367.1 | Tyrosine recombinase XerD | VF |
| HCR03_RS16330 () | 3283395..3284312 | - | 918 | WP_187035405.1 | hypothetical protein ; Integrase | Integrase |
| HCR03_RS16335 () | 3284834..3285259 | - | 426 | WP_187035407.1 | sigma-70 family RNA polymerase sigma factor | - |
| HCR03_RS16340 () | 3285755..3286337 | - | 583 | Protein_3207 | phosphatase PAP2 family protein | - |
| HCR03_RS16345 () | 3286504..3287193 | - | 690 | WP_013485801.1 | Sensory transduction protein regX3 | VF |
| HCR03_RS16350 () | 3287195..3288667 | - | 1473 | WP_187035409.1 | HAMP domain-containing histidine kinase | - |
| HCR03_RS16355 () | 3288923..3291247 | + | 2325 | WP_187035412.1 | HAD-IC family P-type ATPase | - |
| HCR03_RS16360 () | 3291261..3292046 | + | 786 | WP_187035413.1 | undecaprenyl-diphosphate phosphatase | - |
| HCR03_RS16365 () | 3292185..3293048 | - | 864 | WP_013485797.1 | EamA family transporter | - |
| HCR03_RS16370 () | 3293098..3293556 | - | 459 | WP_187035415.1 | helix-turn-helix domain-containing protein | - |
| HCR03_RS16375 () | 3294044..3295087 | - | 1044 | WP_187035416.1 | IS91 family transposase ISWz1 | Transposase |
| HCR03_RS16380 () | 3295075..3296037 | - | 963 | WP_187035418.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HCR03_RS16385 () | 3296034..3297284 | - | 1251 | WP_187035420.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HCR03_RS16390 () | 3297703..3299109 | - | 1407 | WP_187035422.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HCR03_RS16395 () | 3299172..3299381 | - | 210 | WP_187035424.1 | 30S ribosomal protein S6 | - |
| HCR03_RS16400 () | 3299435..3299725 | - | 291 | WP_187035426.1 | succinate dehydrogenase | - |
| HCR03_RS16405 () | 3299855..3300193 | - | 339 | WP_187035428.1 | plasmid mobilization relaxosome protein MobC | - |
| HCR03_RS16410 () | 3300196..3300957 | - | 762 | WP_187035430.1 | DUF3849 domain-containing protein | - |
| HCR03_RS16415 () | 3301026..3301286 | + | 261 | WP_187035431.1 | hypothetical protein | - |
| HCR03_RS16420 () | 3301307..3308701 | - | 7395 | WP_187035433.1 | DEAD/DEAH box helicase family protein | - |
| HCR03_RS16425 () | 3308780..3309205 | - | 426 | WP_187035435.1 | hypothetical protein | - |
| HCR03_RS16430 () | 3309310..3309531 | - | 222 | WP_187035437.1 | transposon-transfer assisting family protein | - |
| HCR03_RS16435 () | 3309533..3311980 | - | 2448 | WP_187035439.1 | DUF4316 domain-containing protein | - |
| HCR03_RS16440 () | 3312064..3312366 | - | 303 | WP_187035441.1 | immunoglobulin | - |
| HCR03_RS16445 () | 3312373..3312699 | - | 327 | WP_187035443.1 | hypothetical protein | - |
| HCR03_RS16450 () | 3312692..3314746 | - | 2055 | WP_187035445.1 | DNA topoisomerase 3 | - |
| HCR03_RS16455 () | 3314903..3315613 | - | 711 | WP_187035447.1 | DUF4366 domain-containing protein | - |
| HCR03_RS16460 () | 3315600..3315845 | - | 246 | WP_187035449.1 | DUF4315 family protein | - |
| HCR03_RS16465 () | 3315866..3317593 | - | 1728 | WP_187035451.1 | putative endopeptidase p60 | VF |
| HCR03_RS16470 () | 3317628..3320033 | - | 2406 | WP_187035453.1 | ATP-binding protein | - |
| HCR03_RS16475 () | 3319933..3320391 | - | 459 | WP_187035455.1 | PrgI family protein | - |
| HCR03_RS16480 () | 3320562..3321071 | + | 510 | WP_187035457.1 | GNAT family N-acetyltransferase | - |
| HCR03_RS16485 () | 3321118..3321987 | - | 870 | WP_187035459.1 | hypothetical protein | - |
| HCR03_RS16490 () | 3322053..3322268 | - | 216 | WP_013485766.1 | Maff2 family protein | - |
| HCR03_RS16495 () | 3322311..3324101 | - | 1791 | WP_187035461.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HCR03_RS16500 () | 3324098..3324589 | - | 492 | WP_187035463.1 | PcfB family protein | - |
| HCR03_RS16505 () | 3324626..3324838 | - | 213 | WP_187035465.1 | hypothetical protein | - |
| HCR03_RS16510 () | 3324840..3325205 | - | 366 | WP_187035467.1 | hypothetical protein | - |
| HCR03_RS16515 () | 3325262..3326143 | - | 882 | WP_187035469.1 | helix-turn-helix domain-containing protein | - |
| HCR03_RS16520 () | 3326173..3328074 | - | 1902 | WP_187035471.1 | DUF5057 domain-containing protein | - |
| HCR03_RS16525 () | 3328142..3328732 | - | 591 | WP_187035473.1 | hypothetical protein | - |
| HCR03_RS16530 () | 3328781..3329368 | - | 588 | WP_187035475.1 | hypothetical protein | - |
| HCR03_RS16535 () | 3329436..3330374 | - | 939 | WP_187035477.1 | ParB/RepB/Spo0J family partition protein | - |
| HCR03_RS16540 () | 3330331..3331149 | - | 819 | WP_187035479.1 | Sporulation initiation inhibitor protein Soj | VF |
| HCR03_RS16545 () | 3331340..3332839 | + | 1500 | WP_207727253.1 | hypothetical protein ; Integrase | Integrase |
| HCR03_RS16550 () | 3332868..3333221 | + | 354 | WP_187035482.1 | TnpV protein | - |
| HCR03_RS16555 () | 3333450..3333986 | + | 537 | WP_187035484.1 | RNA polymerase sigma factor | - |
| HCR03_RS16560 () | 3333979..3334752 | + | 774 | WP_187035486.1 | hypothetical protein | - |
| HCR03_RS16565 () | 3334737..3335612 | + | 876 | WP_187035489.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| HCR03_RS16570 () | 3335605..3336711 | + | 1107 | WP_187035491.1 | hypothetical protein | - |
| HCR03_RS16575 () | 3337203..3337628 | + | 426 | WP_187035493.1 | sigma-70 family RNA polymerase sigma factor | - |
| HCR03_RS16580 () | 3337718..3338149 | + | 432 | WP_187035495.1 | sigma-70 family RNA polymerase sigma factor | - |
| HCR03_RS16585 () | 3338158..3338373 | + | 216 | WP_207727254.1 | DUF3847 domain-containing protein | - |
| HCR03_RS16590 () | 3338591..3340025 | + | 1435 | Protein_3257 | MobA/MobL family protein | - |
| HCR03_RS16595 () | 3340088..3340369 | - | 282 | WP_187035499.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| HCR03_RS16600 () | 3340366..3340641 | - | 276 | WP_187035502.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| HCR03_RS16605 () | 3341170..3341370 | + | 201 | WP_187035505.1 | transposon-encoded TnpW family protein | - |
| HCR03_RS16610 () | 3341606..3345238 | + | 3633 | WP_187035507.1 | hypothetical protein | - |
| HCR03_RS16615 () | 3345519..3345851 | + | 333 | WP_187035509.1 | IS66 family transposase ISCth11 | Transposase |
| HCR03_RS16620 () | 3345845..3346201 | + | 357 | WP_187035511.1 | IS66 family transposase ISCce5 | Transposase |
| HCR03_RS16625 () | 3346350..3347890 | + | 1541 | Protein_3264 | IS66 family transposase ISSwo2 | Transposase |
| HCR03_RS16630 () | 3347988..3348873 | + | 886 | Protein_3265 | TraM recognition domain-containing protein | - |
| HCR03_RS16640 () | 3350147..3350452 | + | 306 | WP_187035513.1 | AAC(3) family N-acetyltransferase | - |
| HCR03_RS16645 () | 3350696..3351649 | - | 954 | WP_187035515.1 | hypothetical protein | - |
| HCR03_RS16650 () | 3352339..3352668 | + | 330 | WP_187035517.1 | plasmid mobilization relaxosome protein MobC | - |
| HCR03_RS16655 () | 3352646..3354028 | + | 1383 | WP_187035519.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HCR03_RS16660 () | 3354040..3354297 | + | 258 | WP_187038179.1 | hypothetical protein | - |
| HCR03_RS16665 () | 3354393..3356015 | + | 1623 | WP_187035522.1 | recombinase family protein | - |
| HCR03_RS16670 () | 3356098..3357342 | + | 1245 | WP_187035524.1 | DUF4368 domain-containing protein | - |
| HCR03_RS16680 () | 3357993..3359639 | - | 1647 | WP_066646087.1 | putative manganese-dependent inorganic diphosphatase | - |
| HCR03_RS16685 () | 3359804..3360163 | - | 360 | WP_187035527.1 | YccF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|