MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 122584 bp
Accession: NZ_CP060277 Location: 1..122584 Organism: Serratia ureilytica strain CC119 Replicon: plasmid pCC119
Accession: NZ_CP060277 Location: 1..122584 Organism: Serratia ureilytica strain CC119 Replicon: plasmid pCC119
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0895_RS23970 () | 732..1439 | - | 708 | WP_089186981.1 | hypothetical protein | VF |
| D0895_RS23975 () | 1448..1801 | - | 354 | WP_060432360.1 | hypothetical protein | - |
| D0895_RS23980 () | 1828..3738 | - | 1911 | WP_187049026.1 | DNA primase | - |
| D0895_RS23985 () | 5311..5796 | - | 486 | WP_164057785.1 | hypothetical protein | - |
| D0895_RS23990 () | 5983..6270 | - | 288 | WP_060432358.1 | hypothetical protein | VF |
| D0895_RS23995 () | 6263..7438 | - | 1176 | WP_164057784.1 | Twitching mobility protein | VF |
| D0895_RS24000 () | 7431..8246 | - | 816 | WP_187048987.1 | hypothetical protein | VF |
| D0895_RS24005 () | 8243..8707 | - | 465 | WP_187048988.1 | DotD/TraH family lipoprotein | - |
| D0895_RS24010 () | 8793..9869 | - | 1077 | WP_187048989.1 | acyltransferase | - |
| D0895_RS24015 () | 10205..11299 | - | 1095 | Protein_10 | hypothetical protein | VF |
| D0895_RS24020 () | 11296..11964 | - | 669 | WP_187048990.1 | Leader peptidase PppA | VF |
| D0895_RS24025 () | 11964..12449 | - | 486 | WP_187048991.1 | hypothetical protein | VF |
| D0895_RS24030 () | 12504..13094 | - | 591 | WP_060442022.1 | hypothetical protein | VF |
| D0895_RS24035 () | 13131..14246 | - | 1116 | WP_187048992.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| D0895_RS24040 () | 14243..15733 | - | 1491 | WP_187048993.1 | Type II secretion system protein E | VF |
| D0895_RS24045 () | 15739..16311 | - | 573 | WP_060442019.1 | hypothetical protein | VF |
| D0895_RS24050 () | 16298..17596 | - | 1299 | WP_060442018.1 | type 4b pilus protein PilO2 | - |
| D0895_RS24055 () | 17600..19231 | - | 1632 | WP_060442017.1 | Outer membrane lipoprotein BfpB | VF |
| D0895_RS24060 () | 19253..19717 | - | 465 | WP_060442016.1 | hypothetical protein | VF |
| D0895_RS24065 () | 19831..20871 | - | 1041 | WP_187048994.1 | hypothetical protein | VF |
| D0895_RS24070 () | 21747..21947 | - | 201 | WP_072270311.1 | TraY domain-containing protein | - |
| D0895_RS24075 () | 22064..22339 | - | 276 | WP_060442014.1 | hypothetical protein | - |
| D0895_RS24080 () | 22463..24418 | - | 1956 | WP_187048995.1 | Protein TraI | Relaxase |
| D0895_RS24085 () | 24426..24758 | - | 333 | WP_187048996.1 | ribbon-helix-helix protein, CopG family | - |
| D0895_RS24090 () | 24981..25301 | + | 321 | WP_187048997.1 | hypothetical protein | - |
| D0895_RS24095 () | 25335..26189 | - | 855 | WP_187048998.1 | hypothetical protein | - |
| D0895_RS24100 () | 26234..26650 | - | 417 | WP_187048999.1 | protein TraE | - |
| D0895_RS24105 () | 27467..28348 | - | 882 | WP_187049000.1 | DUF4942 domain-containing protein | - |
| D0895_RS24110 () | 28408..28668 | - | 261 | WP_187049001.1 | hypothetical protein | - |
| D0895_RS24115 () | 28755..29048 | - | 294 | WP_187049002.1 | hypothetical protein | - |
| D0895_RS24120 () | 29505..29933 | - | 429 | WP_164057770.1 | dehydrogenase | - |
| D0895_RS24125 () | 30489..31220 | - | 732 | WP_187049003.1 | plasmid SOS inhibition protein A | - |
| D0895_RS24130 () | 31211..31651 | - | 441 | WP_187049004.1 | conjugation system SOS inhibitor PsiB | - |
| D0895_RS24135 () | 31693..33747 | - | 2055 | WP_187049005.1 | ParB/RepB/Spo0J family partition protein | - |
| D0895_RS24140 () | 33834..34124 | - | 291 | WP_142816599.1 | ribulokinase | - |
| D0895_RS24145 () | 34798..35196 | - | 399 | WP_070914215.1 | DUF1380 family protein | - |
| D0895_RS24150 () | 35255..35680 | - | 426 | WP_094887923.1 | antirestriction protein | - |
| D0895_RS24155 () | 36105..36326 | - | 222 | WP_060432392.1 | hypothetical protein | - |
| D0895_RS24160 () | 36343..36987 | - | 645 | WP_060442002.1 | DNA methylase | - |
| D0895_RS24165 () | 37357..38367 | + | 1011 | WP_187049006.1 | LacI family DNA-binding transcriptional regulator | - |
| D0895_RS24170 () | 38513..39952 | + | 1440 | WP_187049007.1 | Na+/H+ antiporter NhaC | - |
| D0895_RS24175 () | 39945..41129 | + | 1185 | WP_187049008.1 | pyridoxal phosphate-dependent aminotransferase | - |
| D0895_RS24180 () | 41332..41622 | + | 291 | WP_187049009.1 | sigma-70 family RNA polymerase sigma factor | - |
| D0895_RS24185 () | 42048..42674 | + | 627 | WP_060445473.1 | Chromosome-partitioning ATPase Soj | VF |
| D0895_RS24190 () | 42671..42874 | + | 204 | WP_128869034.1 | chromosome partitioning protein ParB | - |
| D0895_RS24195 () | 42932..43150 | - | 219 | WP_187049010.1 | helix-turn-helix domain-containing protein | - |
| D0895_RS24200 () | 43207..43383 | - | 177 | WP_187049011.1 | hypothetical protein | - |
| D0895_RS24205 () | 43492..44292 | - | 801 | WP_187049012.1 | IS91 family transposase ISAzo26 | Transposase |
| D0895_RS24210 () | 44289..44948 | - | 660 | WP_187049013.1 | hypothetical protein | - |
| D0895_RS24215 () | 44981..45337 | - | 357 | WP_187049014.1 | hypothetical protein | - |
| D0895_RS24220 () | 45931..47001 | + | 1071 | WP_187049015.1 | hypothetical protein | - |
| D0895_RS24225 () | 47004..47759 | + | 756 | WP_187049016.1 | AAA family ATPase | - |
| D0895_RS24230 () | 47698..47883 | + | 186 | Protein_53 | Tn3 family transposase | - |
| D0895_RS24235 () | 47909..49756 | + | 1848 | Protein_54 | Tn3 family transposase | - |
| D0895_RS24240 () | 49789..49866 | - | 78 | Protein_55 | IS6 family transposase IS15 | Transposase |
| D0895_RS24245 () | 50583..51149 | + | 567 | WP_187049017.1 | hypothetical protein | - |
| D0895_RS24250 () | 51235..51935 | - | 701 | Protein_57 | IS6 family transposase | - |
| D0895_RS24255 () | 52058..52431 | + | 374 | Protein_58 | SOS response-associated peptidase family protein | - |
| D0895_RS24260 () | 52328..53107 | - | 780 | WP_187049018.1 | response regulator transcription factor | - |
| D0895_RS24265 () | 53586..53912 | + | 327 | WP_187049019.1 | hypothetical protein | - |
| D0895_RS24270 () | 54135..54872 | + | 738 | WP_187049020.1 | hypothetical protein | VF |
| D0895_RS24275 () | 54928..55437 | + | 510 | WP_187049021.1 | CFA/I fimbrial subunit B | VF |
| D0895_RS24280 () | 55572..58211 | + | 2640 | WP_187049027.1 | putative outer membrane usher protein EcpC | VF |
| D0895_RS24285 () | 58221..59345 | + | 1125 | WP_187049022.1 | phage tail protein | - |
| D0895_RS24290 () | 59501..60664 | + | 1164 | WP_187049023.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| D0895_RS24295 () | 60852..61175 | + | 324 | WP_187049024.1 | EAL domain-containing protein | - |
| D0895_RS24300 () | 61114..61455 | + | 342 | WP_187049025.1 | EAL domain-containing protein | - |
| D0895_RS24305 () | 61374..61853 | - | 480 | Protein_68 | hypothetical protein | - |
| D0895_RS24310 () | 62102..62332 | + | 231 | WP_187048951.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| D0895_RS24315 () | 62329..62745 | + | 417 | WP_187048952.1 | PIN domain-containing protein | Toxin Detail |
| D0895_RS24320 () | 62797..63027 | + | 231 | WP_187048953.1 | hypothetical protein | - |
| D0895_RS24325 () | 63256..63951 | + | 696 | WP_187048954.1 | SOS response-associated peptidase family protein | - |
| D0895_RS24330 () | 64282..65097 | + | 816 | Protein_73 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| D0895_RS24335 () | 65300..65590 | + | 291 | WP_187048955.1 | hypothetical protein | - |
| D0895_RS24340 () | 65789..66031 | - | 243 | WP_070914200.1 | hypothetical protein | - |
| D0895_RS24345 () | 66034..66657 | - | 624 | WP_060432385.1 | AAA family ATPase | - |
| D0895_RS24350 () | 66829..67572 | - | 744 | WP_025862211.1 | tyrosine-type recombinase/integrase | - |
| D0895_RS24355 () | 68408..68932 | + | 525 | WP_187049028.1 | hypothetical protein | - |
| D0895_RS24360 () | 68944..69292 | + | 349 | Protein_79 | IS3 family transposase ISEc14 | Transposase |
| D0895_RS24365 () | 69483..69785 | - | 303 | WP_187048956.1 | PerC family transcriptional regulator | - |
| D0895_RS24370 () | 69916..70149 | - | 234 | WP_187048957.1 | hypothetical protein | - |
| D0895_RS24375 () | 70285..70449 | - | 165 | WP_187048958.1 | hypothetical protein | - |
| D0895_RS24380 () | 70717..70941 | - | 225 | WP_042785961.1 | YgdI/YgdR family lipoprotein | - |
| D0895_RS24385 () | 71020..72054 | - | 1035 | WP_164120419.1 | YrzE family protein | - |
| D0895_RS24390 () | 72210..72866 | - | 657 | WP_187048959.1 | DUF421 domain-containing protein | - |
| D0895_RS24395 () | 72932..75181 | - | 2250 | WP_187049029.1 | Catalase HPII | VF |
| D0895_RS24400 () | 75580..76764 | + | 1185 | Protein_87 | IS91 family transposase | - |
| D0895_RS24405 () | 78421..78960 | + | 540 | WP_187048960.1 | hypothetical protein | - |
| D0895_RS24410 () | 79755..86756 | + | 7002 | WP_187048961.1 | Invasin | VF |
| D0895_RS24415 () | 87154..88125 | + | 972 | WP_187048962.1 | IS91 family transposase ISVa3 | Transposase |
| D0895_RS24420 () | 88302..89252 | + | 951 | WP_187049030.1 | Recombination-promoting nuclease RpnA | VF |
| D0895_RS24425 () | 89539..89802 | - | 264 | WP_187048963.1 | transcriptional regulator | - |
| D0895_RS24430 () | 90168..91277 | + | 1110 | WP_187048964.1 | recombinase RecA | - |
| D0895_RS24435 () | 91277..91657 | + | 381 | WP_052475507.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| D0895_RS24440 () | 91710..92984 | + | 1275 | WP_187048965.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| D0895_RS24445 () | 93133..93558 | + | 426 | WP_187048966.1 | hypothetical protein | - |
| D0895_RS24450 () | 93609..94598 | - | 990 | WP_187048967.1 | hypothetical protein | - |
| D0895_RS24455 () | 95604..96551 | - | 948 | WP_097103248.1 | Replication protein | - |
| D0895_RS24460 () | 96983..97234 | - | 252 | WP_071532852.1 | replication regulatory protein RepA | - |
| D0895_RS24465 () | 97393..98175 | - | 783 | WP_187048968.1 | F-pilin acetylation protein TraX | - |
| D0895_RS24470 () | 98426..98875 | - | 450 | WP_187048969.1 | hypothetical protein | - |
| D0895_RS24475 () | 98865..100802 | - | 1938 | WP_187048970.1 | integrase | - |
| D0895_RS24480 () | 100802..102601 | - | 1800 | WP_187048971.1 | site-specific integrase | - |
| D0895_RS24485 () | 102598..103791 | - | 1194 | WP_187048972.1 | tyrosine-type recombinase/integrase | - |
| D0895_RS24490 () | 103881..104687 | - | 807 | WP_187049031.1 | DUF1460 domain-containing protein | - |
| D0895_RS24495 () | 104985..105389 | - | 405 | Protein_106 | Phospholipase D | VF |
| D0895_RS24500 () | 105386..105733 | - | 348 | WP_187048973.1 | hypothetical protein | - |
| D0895_RS24505 () | 105712..107931 | - | 2220 | WP_187048974.1 | type IV secretory system conjugative DNA transfer family protein | - |
| D0895_RS24510 () | 107915..108991 | - | 1077 | WP_187048975.1 | DsbC family protein | - |
| D0895_RS24515 () | 109100..110311 | - | 1212 | WP_187048976.1 | conjugal transfer protein | - |
| D0895_RS24520 () | 110404..111042 | - | 639 | WP_187048977.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| D0895_RS24525 () | 111109..113253 | - | 2145 | WP_187048978.1 | DotA/TraY family protein | - |
| D0895_RS24530 () | 113351..113911 | - | 561 | WP_187048979.1 | conjugal transfer protein TraX | - |
| D0895_RS24535 () | 113901..115109 | - | 1209 | WP_142591823.1 | conjugal transfer protein TraW | - |
| D0895_RS24540 () | 115122..118184 | - | 3063 | WP_187048980.1 | ATP-binding protein | - |
| D0895_RS24545 () | 118159..118773 | - | 615 | WP_187048981.1 | conjugal transfer protein TraT | - |
| D0895_RS24550 () | 118880..119266 | - | 387 | WP_187048982.1 | conjugal transfer protein TraR | - |
| D0895_RS24555 () | 119345..119887 | - | 543 | WP_060432364.1 | conjugal transfer protein TraQ | - |
| D0895_RS24560 () | 119898..120617 | - | 720 | WP_187048983.1 | conjugal transfer protein TraP | - |
| D0895_RS24565 () | 120610..120957 | - | 348 | WP_187048984.1 | hypothetical protein | - |
| D0895_RS24570 () | 120968..122314 | - | 1347 | WP_187048985.1 | conjugal transfer protein TraO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|