MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 59866 bp
Accession: NZ_CP060263 Location: 3090509..3150374 Organism: Dickeya zeae strain JZL7 Replicon: chromosome
Accession: NZ_CP060263 Location: 3090509..3150374 Organism: Dickeya zeae strain JZL7 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7F34_RS13860 | 3086095..3086751 | - | 657 | WP_019843896.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| H7F34_RS13865 | 3087394..3087618 | + | 225 | WP_019843897.1 | DUF2594 family protein | - |
| H7F34_RS13875 | 3088314..3089717 | + | 1404 | WP_219951478.1 | D-serine/D-alanine/glycine transporter | - |
| H7F34_RS13880 | 3089802..3090065 | - | 264 | Protein_2732 | LysR family transcriptional regulator | - |
| H7F34_RS13890 | 3090686..3091957 | + | 1272 | WP_219951479.1 | Prophage integrase IntA ; Integrase | Integrase |
| H7F34_RS13895 | 3092071..3092385 | - | 315 | WP_033577753.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13900 | 3092571..3092858 | - | 288 | WP_033577754.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13905 | 3093033..3093305 | + | 273 | WP_012769239.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13910 | 3093504..3093681 | + | 178 | Protein_2737 | AlpA family transcriptional regulator | - |
| H7F34_RS13915 | 3093985..3094296 | - | 312 | WP_219951480.1 | DUF736 domain-containing protein | - |
| H7F34_RS13920 | 3095302..3096228 | + | 927 | WP_219951481.1 | hypothetical protein | - |
| H7F34_RS13925 | 3096525..3096791 | - | 267 | WP_033569403.1 | type VI secretion system PAAR protein | - |
| H7F34_RS13930 | 3096817..3097836 | - | 1020 | WP_219951482.1 | hypothetical protein | - |
| H7F34_RS13935 | 3097960..3098982 | - | 1023 | WP_219951483.1 | hypothetical protein | - |
| H7F34_RS13940 | 3098997..3100541 | - | 1545 | WP_016940993.1 | hypothetical protein | - |
| H7F34_RS13945 | 3100553..3101383 | - | 831 | WP_219951484.1 | DUF4123 domain-containing protein | - |
| H7F34_RS13950 | 3101380..3103341 | - | 1962 | WP_219951485.1 | Actin cross-linking toxin VgrG1 | VF |
| H7F34_RS13955 | 3103505..3104023 | - | 519 | WP_012883992.1 | Major exported protein | VF |
| H7F34_RS13960 | 3104979..3105224 | + | 246 | WP_012769232.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13965 | 3105574..3105843 | - | 270 | WP_024108925.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13970 | 3105977..3106249 | + | 273 | WP_219951486.1 | HTH-type transcriptional regulator Xre | VF |
| H7F34_RS13975 | 3106367..3106624 | + | 258 | WP_016940998.1 | helix-turn-helix transcriptional regulator | - |
| H7F34_RS13980 | 3107119..3107313 | + | 195 | WP_012769228.1 | AlpA family transcriptional regulator | - |
| H7F34_RS13985 | 3107330..3107914 | + | 585 | WP_219951487.1 | DUF2857 domain-containing protein | - |
| H7F34_RS13990 | 3107904..3108113 | + | 210 | WP_219951488.1 | TraR/DksA family transcriptional regulator | - |
| H7F34_RS13995 | 3108435..3112046 | + | 3612 | WP_219951489.1 | hypothetical protein | - |
| H7F34_RS14000 | 3113005..3114111 | + | 1107 | WP_219951490.1 | hypothetical protein | - |
| H7F34_RS14005 | 3114501..3116939 | - | 2439 | WP_219951491.1 | SIR2 family protein | - |
| H7F34_RS14010 | 3117445..3117678 | + | 234 | WP_219951492.1 | hypothetical protein | - |
| H7F34_RS14015 | 3117749..3118396 | + | 648 | WP_219953477.1 | Type IV secretion system protein virB1 | VF |
| H7F34_RS14020 | 3118416..3118691 | + | 276 | WP_012769221.1 | hypothetical protein | VF |
| H7F34_RS14025 | 3118701..3121448 | + | 2748 | WP_219951493.1 | Type IV secretion system protein virB4 | VF |
| H7F34_RS14030 | 3121473..3122189 | + | 717 | WP_219951494.1 | type IV secretion system protein | - |
| H7F34_RS14035 | 3122200..3122424 | + | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| H7F34_RS14040 | 3122436..3123464 | + | 1029 | WP_219951495.1 | type IV secretion system protein | - |
| H7F34_RS14045 | 3123553..3123693 | + | 141 | WP_016941008.1 | hypothetical protein | - |
| H7F34_RS14050 | 3123686..3124369 | + | 684 | WP_042860390.1 | Type IV secretion system protein PtlE | VF |
| H7F34_RS14055 | 3124369..3125259 | + | 891 | WP_219951496.1 | P-type conjugative transfer protein VirB9 | - |
| H7F34_RS14060 | 3125256..3126458 | + | 1203 | WP_219951497.1 | Type IV secretion system protein virB10 | VF |
| H7F34_RS14065 | 3126448..3127464 | + | 1017 | WP_219951498.1 | Type IV secretion system protein VirB11 | VF |
| H7F34_RS14070 | 3127505..3127807 | + | 303 | WP_219951499.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| H7F34_RS14075 | 3128503..3130353 | + | 1851 | WP_219951500.1 | type IV secretion system DNA-binding domain-containing protein | - |
| H7F34_RS14080 | 3130362..3131108 | + | 747 | WP_219951501.1 | MobC family replication-relaxation protein | - |
| H7F34_RS14085 | 3131287..3131628 | - | 342 | WP_219951502.1 | hypothetical protein | - |
| H7F34_RS14090 | 3131628..3131906 | + | 279 | Protein_2773 | baseplate protein | - |
| H7F34_RS14095 | 3132027..3132353 | + | 327 | WP_103183781.1 | hypothetical protein | - |
| H7F34_RS14100 | 3132403..3133119 | + | 717 | WP_219951503.1 | hypothetical protein | - |
| H7F34_RS14105 | 3133283..3134818 | - | 1536 | WP_219951504.1 | ISNCY family transposase ISShha1 | Transposase |
| H7F34_RS14110 | 3135243..3136661 | + | 1419 | WP_219951505.1 | hypothetical protein | - |
| H7F34_RS22205 | 3136731..3136817 | + | 87 | Protein_2778 | mobilization protein mobC | - |
| H7F34_RS14115 | 3136958..3137272 | - | 315 | WP_219951506.1 | CcdB family protein | Toxin Detail |
| H7F34_RS14120 | 3137275..3137511 | - | 237 | WP_216282325.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H7F34_RS14125 | 3137832..3138776 | - | 945 | WP_219951507.1 | zincin-like metallopeptidase domain-containing protein | - |
| H7F34_RS14130 | 3139493..3141802 | + | 2310 | WP_219951508.1 | TerB N-terminal domain-containing protein | - |
| H7F34_RS14135 | 3141806..3143122 | + | 1317 | WP_219951509.1 | ATP-binding protein | - |
| H7F34_RS14140 | 3143119..3145317 | + | 2199 | WP_219951510.1 | DEAD/DEAH box helicase | - |
| H7F34_RS14145 | 3145917..3147155 | + | 1239 | WP_219951511.1 | IS110 family transposase ISCps4 | Transposase |
| H7F34_RS14150 | 3147246..3148367 | - | 1122 | WP_219951512.1 | hypothetical protein | - |
| H7F34_RS14155 | 3148372..3148896 | - | 525 | WP_219951513.1 | hypothetical protein | - |
| H7F34_RS14160 | 3149176..3150000 | - | 825 | WP_219951514.1 | hypothetical protein | - |
| H7F34_RS22210 | 3150228..3150422 | + | 195 | Protein_2789 | hypothetical protein | - |
| H7F34_RS14165 | 3150973..3152235 | + | 1263 | WP_219951515.1 | glycosyltransferase | - |
| H7F34_RS14170 | 3152468..3154231 | + | 1764 | WP_219951516.1 | gamma-glutamyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|