MGE detailed information
MGE type: Mobilizable plasmid MGE length: 54690 bp
Accession: NZ_CP060126 Location: 1..54690 Organism: Sphingobium yanoikuyae strain A3 Replicon: plasmid unnamed2
Accession: NZ_CP060126 Location: 1..54690 Organism: Sphingobium yanoikuyae strain A3 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H3V42_RS33180 () | 1..1807 | - | 1807 | WP_185708002.1 | FTR1 family protein | - |
| H3V42_RS33185 () | 2116..4803 | - | 2688 | WP_037475977.1 | NAD-dependent epimerase/dehydratase family protein | - |
| H3V42_RS33190 () | 4868..5794 | - | 927 | WP_185708004.1 | copper homeostasis membrane protein CopD | - |
| H3V42_RS33195 () | 5799..6167 | - | 369 | WP_037475981.1 | copper homeostasis periplasmic binding protein CopC | - |
| H3V42_RS33200 () | 6375..7373 | + | 999 | WP_185708006.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| H3V42_RS33205 () | 7654..8058 | + | 405 | WP_082736288.1 | four-helix bundle copper-binding protein | - |
| H3V42_RS33210 () | 8147..8662 | - | 516 | WP_066269071.1 | hypothetical protein | - |
| H3V42_RS33215 () | 9025..9474 | - | 450 | WP_185708008.1 | DUF411 domain-containing protein | - |
| H3V42_RS33220 () | 9533..9907 | - | 375 | WP_066486611.1 | DUF305 domain-containing protein | - |
| H3V42_RS33225 () | 9955..11235 | - | 1281 | WP_185708010.1 | copper resistance protein B | - |
| H3V42_RS33230 () | 11225..13240 | - | 2016 | WP_185708012.1 | copper resistance system multicopper oxidase | - |
| H3V42_RS33235 () | 13340..13912 | - | 573 | WP_185708014.1 | RNA polymerase sigma factor CnrH | VF |
| H3V42_RS33240 () | 13909..14328 | - | 420 | WP_185708016.1 | periplasmic heavy metal sensor | - |
| H3V42_RS33245 () | 14349..14633 | - | 285 | WP_004212939.1 | hypothetical protein | - |
| H3V42_RS33250 () | 15217..17361 | - | 2145 | WP_066269041.1 | TonB-dependent siderophore receptor | - |
| H3V42_RS33255 () | 17652..17957 | + | 306 | WP_185708018.1 | hypothetical protein | - |
| H3V42_RS33260 () | 17954..18352 | + | 399 | WP_185708020.1 | CopG family transcriptional regulator | - |
| H3V42_RS33265 () | 18352..19314 | + | 963 | WP_185708022.1 | tyrosine-type recombinase/integrase | - |
| H3V42_RS33270 () | 19356..20243 | - | 888 | WP_185708024.1 | aspartyl protease family protein | - |
| H3V42_RS33275 () | 20415..21035 | - | 621 | WP_185708026.1 | histidine phosphatase family protein | - |
| H3V42_RS33280 () | 21045..21326 | - | 282 | WP_185708028.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| H3V42_RS33285 () | 21313..21579 | - | 267 | WP_185708030.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| H3V42_RS33290 () | 22058..22699 | + | 642 | WP_185708032.1 | transcription elongation protein SprT | - |
| H3V42_RS33295 () | 22783..23439 | + | 657 | WP_185708034.1 | Sporulation initiation inhibitor protein Soj | VF |
| H3V42_RS33300 () | 23436..23753 | + | 318 | WP_185708036.1 | hypothetical protein | - |
| H3V42_RS33305 () | 23811..24236 | + | 426 | WP_185708064.1 | GFA family protein | - |
| H3V42_RS33310 () | 24312..25424 | - | 1113 | WP_185708038.1 | replication initiator protein A | - |
| H3V42_RS33315 () | 26157..27833 | - | 1677 | WP_185708040.1 | Conjugal transfer protein TraG | VF |
| H3V42_RS33320 () | 27840..28130 | - | 291 | WP_185708042.1 | hypothetical protein | - |
| H3V42_RS33325 () | 28191..31148 | - | 2958 | WP_031286087.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| H3V42_RS33330 () | 31288..31839 | + | 552 | WP_004213210.1 | Tn3 family transposase ISPsy42 | Transposase |
| H3V42_RS33335 () | 31836..32621 | + | 786 | WP_004213209.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| H3V42_RS33340 () | 32732..32968 | + | 237 | Protein_32 | MFS transporter | - |
| H3V42_RS33345 () | 32970..33485 | - | 516 | WP_185708044.1 | GNAT family N-acetyltransferase | - |
| H3V42_RS33350 () | 33514..34101 | - | 588 | Protein_34 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| H3V42_RS33355 () | 34498..35364 | + | 867 | WP_006953933.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| H3V42_RS33360 () | 35443..35991 | - | 549 | WP_185708046.1 | RNA polymerase sigma factor CnrH | VF |
| H3V42_RS33365 () | 36030..36470 | - | 441 | WP_185708048.1 | periplasmic heavy metal sensor | - |
| H3V42_RS33370 () | 36475..36771 | - | 297 | WP_185708050.1 | hypothetical protein | - |
| H3V42_RS33375 () | 37036..39147 | + | 2112 | WP_185708052.1 | TonB-dependent receptor | - |
| H3V42_RS33380 () | 39202..39666 | - | 465 | WP_185708054.1 | nuclear transport factor 2 family protein | - |
| H3V42_RS33385 () | 39983..40363 | + | 381 | WP_185708056.1 | glycine zipper 2TM domain-containing protein | - |
| H3V42_RS33390 () | 40619..40915 | - | 297 | WP_185708058.1 | DUF2285 domain-containing protein | - |
| H3V42_RS33395 () | 41303..41632 | + | 330 | Protein_43 | GNAT family N-acetyltransferase | - |
| H3V42_RS33400 () | 41769..44466 | - | 2698 | Protein_44 | TonB-dependent receptor | - |
| H3V42_RS33405 () | 44792..45217 | - | 426 | WP_185708060.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| H3V42_RS33410 () | 45406..45804 | - | 399 | WP_185708062.1 | hypothetical protein | - |
| H3V42_RS33415 () | 45979..46599 | + | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| H3V42_RS33420 () | 46596..47126 | + | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| H3V42_RS33425 () | 47192..47458 | - | 267 | Protein_49 | type IV secretory system conjugative DNA transfer family protein | - |
| H3V42_RS33430 () | 47465..47755 | - | 291 | WP_062346066.1 | hypothetical protein | - |
| H3V42_RS33435 () | 47752..47976 | - | 225 | WP_066268892.1 | conjugal transfer protein TraD | - |
| H3V42_RS33440 () | 48014..48319 | - | 306 | WP_066268908.1 | conjugal transfer protein TraD | - |
| H3V42_RS33445 () | 48494..51598 | + | 3105 | WP_066268888.1 | Mobilization protein A | Relaxase |
| H3V42_RS33450 () | 51613..52323 | + | 711 | WP_066268885.1 | hypothetical protein | - |
| H3V42_RS33455 () | 52817..53239 | + | 423 | WP_185708066.1 | Flagellar hook-basal body complex protein FliE | VF |
| H3V42_RS33460 () | 53596..54042 | - | 447 | WP_165890055.1 | nuclear transport factor 2 family protein | - |
| H3V42_RS33465 () | 54307..54568 | + | 262 | Protein_57 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|