MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71501 bp
Accession: NZ_CP060125 Location: 1..71501 Organism: Sphingobium yanoikuyae strain A3 Replicon: plasmid pSYA3-2
Accession: NZ_CP060125 Location: 1..71501 Organism: Sphingobium yanoikuyae strain A3 Replicon: plasmid pSYA3-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H3V42_RS32815 () | 619..1383 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| H3V42_RS32820 () | 1730..2047 | + | 318 | WP_022684651.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| H3V42_RS32825 () | 2122..3393 | + | 1272 | WP_185707998.1 | cytochrome P450 | - |
| H3V42_RS32830 () | 3495..4259 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| H3V42_RS32835 () | 4323..4670 | + | 348 | Protein_5 | IS6-like element IS6100 family transposase | - |
| H3V42_RS32840 () | 4926..5300 | + | 375 | WP_013041565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H3V42_RS32845 () | 5297..5623 | + | 327 | WP_006964370.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| H3V42_RS32850 () | 5623..5865 | + | 243 | WP_006964372.1 | hypothetical protein | - |
| H3V42_RS32855 () | 5858..6157 | + | 300 | WP_006964373.1 | hypothetical protein | - |
| H3V42_RS32860 () | 6178..7290 | - | 1113 | WP_006964375.1 | hypothetical protein | VF |
| H3V42_RS32865 () | 7293..8969 | - | 1677 | WP_106000993.1 | P-type conjugative transfer protein TrbL | - |
| H3V42_RS32870 () | 9019..9201 | - | 183 | WP_006964379.1 | hypothetical protein | - |
| H3V42_RS32875 () | 9211..9933 | - | 723 | WP_106000994.1 | P-type conjugative transfer protein TrbJ | - |
| H3V42_RS32880 () | 9992..11341 | - | 1350 | WP_006964383.1 | Type IV secretion system protein virB10 | VF |
| H3V42_RS32885 () | 11372..12145 | - | 774 | WP_019053953.1 | SPOR domain-containing protein | - |
| H3V42_RS32890 () | 12148..13131 | - | 984 | WP_006964392.1 | P-type conjugative transfer protein TrbG | - |
| H3V42_RS32895 () | 13149..13868 | - | 720 | WP_006964394.1 | IncP-type conjugative transfer protein TrbF | - |
| H3V42_RS32900 () | 13855..16434 | - | 2580 | WP_006964396.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| H3V42_RS32905 () | 16431..16763 | - | 333 | WP_026149854.1 | conjugal transfer protein TrbD | - |
| H3V42_RS32910 () | 16782..17162 | - | 381 | WP_006964400.1 | TrbC/VirB2 family protein | - |
| H3V42_RS32915 () | 17176..18141 | - | 966 | WP_026149853.1 | Type IV secretion system protein PtlH | VF |
| H3V42_RS32920 () | 18248..18649 | - | 402 | WP_019053950.1 | helix-turn-helix domain-containing protein | - |
| H3V42_RS32925 () | 19377..22286 | + | 2910 | WP_006961814.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| H3V42_RS32930 () | 22429..23295 | + | 867 | WP_006961816.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| H3V42_RS32935 () | 23500..23739 | + | 240 | WP_019053948.1 | hypothetical protein | - |
| H3V42_RS32940 () | 23918..24685 | + | 768 | WP_006954207.1 | GntR family transcriptional regulator | - |
| H3V42_RS32945 () | 25025..25438 | + | 414 | WP_006954205.1 | antirestriction protein | - |
| H3V42_RS32950 () | 25543..25806 | + | 264 | WP_006954203.1 | hypothetical protein | - |
| H3V42_RS32955 () | 25912..26241 | + | 330 | WP_006954201.1 | hypothetical protein | - |
| H3V42_RS32960 () | 26234..26533 | + | 300 | WP_019053944.1 | hypothetical protein | - |
| H3V42_RS32965 () | 26530..27276 | + | 747 | WP_006954197.1 | Chromosome partitioning protein ParA | VF |
| H3V42_RS32970 () | 27279..28301 | + | 1023 | WP_006954195.1 | ParB/RepB/Spo0J family partition protein | - |
| H3V42_RS32975 () | 28419..29051 | + | 633 | WP_006954193.1 | hypothetical protein | - |
| H3V42_RS32980 () | 29082..29522 | - | 441 | WP_006954192.1 | conjugal transfer protein TraM | - |
| H3V42_RS32985 () | 29522..30247 | - | 726 | WP_006954191.1 | IncP-type DNA transfer protein TraL | - |
| H3V42_RS32990 () | 30244..30630 | - | 387 | WP_158258150.1 | hypothetical protein | - |
| H3V42_RS32995 () | 30945..31331 | + | 387 | WP_006954189.1 | IncP-type oriT-binding protein TraJ | - |
| H3V42_RS33000 () | 31348..33666 | + | 2319 | WP_006954188.1 | Protein TraI | Relaxase |
| H3V42_RS33005 () | 33688..35580 | + | 1893 | WP_006954187.1 | Conjugal transfer protein TraG | VF |
| H3V42_RS33010 () | 35577..36110 | + | 534 | WP_006954186.1 | conjugative transfer signal peptidase TraF | - |
| H3V42_RS33015 () | 36115..38295 | + | 2181 | WP_006954185.1 | DNA topoisomerase 3 | - |
| H3V42_RS33020 () | 38292..38543 | + | 252 | WP_006954184.1 | hypothetical protein | - |
| H3V42_RS33025 () | 38562..41921 | + | 3360 | WP_006954183.1 | DUF1738 domain-containing protein | - |
| H3V42_RS33030 () | 41923..42324 | - | 402 | WP_019053934.1 | hypothetical protein | - |
| H3V42_RS33035 () | 42351..42596 | + | 246 | WP_019053933.1 | helix-turn-helix domain-containing protein | - |
| H3V42_RS33040 () | 42744..42893 | + | 150 | WP_006954178.1 | hypothetical protein | - |
| H3V42_RS33045 () | 42904..43068 | - | 165 | WP_019053931.1 | hypothetical protein | - |
| H3V42_RS33050 () | 43286..43990 | - | 705 | WP_014194362.1 | DNA adenine methylase | - |
| H3V42_RS33055 () | 44139..45215 | - | 1077 | WP_019053930.1 | hypothetical protein | - |
| H3V42_RS33060 () | 45720..45956 | - | 237 | WP_006954175.1 | hypothetical protein | - |
| H3V42_RS33065 () | 45975..46649 | - | 675 | WP_185708000.1 | SprT-like domain-containing protein | - |
| H3V42_RS33070 () | 46678..47442 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| H3V42_RS33075 () | 47811..48992 | - | 1182 | WP_022684426.1 | 4-hydroxybenzoate 3-monooxygenase | - |
| H3V42_RS33080 () | 49124..49999 | + | 876 | WP_022684425.1 | helix-turn-helix domain-containing protein | - |
| H3V42_RS33085 () | 50199..50846 | - | 648 | WP_159368312.1 | TetR/AcrR family transcriptional regulator | - |
| H3V42_RS33090 () | 51106..51479 | + | 374 | Protein_56 | IS110 family transposase ISMdi14B | Transposase |
| H3V42_RS33095 () | 51556..51694 | + | 139 | Protein_57 | IS5/IS1182 family transposase | - |
| H3V42_RS33100 () | 52407..53846 | + | 1440 | WP_022684422.1 | carotenoid oxygenase family protein | - |
| H3V42_RS33105 () | 54140..55537 | + | 1398 | WP_022684420.1 | aldehyde dehydrogenase | - |
| H3V42_RS33110 () | 55577..56260 | + | 684 | WP_159367709.1 | nuclear transport factor 2 family protein | - |
| H3V42_RS33115 () | 56309..56752 | + | 444 | WP_022684418.1 | acyl-CoA thioesterase | - |
| H3V42_RS33120 () | 56788..57636 | + | 849 | WP_051132678.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| H3V42_RS33125 () | 57693..58925 | + | 1233 | WP_022684416.1 | Tm-1-like ATP-binding domain-containing protein | - |
| H3V42_RS33130 () | 58922..59395 | + | 474 | WP_006961057.1 | biotin carboxyl carrier domain-containing protein | - |
| H3V42_RS33135 () | 59392..60729 | + | 1338 | WP_185707992.1 | ATP-grasp domain-containing protein | - |
| H3V42_RS33140 () | 60722..62206 | + | 1485 | WP_006961055.1 | biotin carboxyl carrier protein | - |
| H3V42_RS33145 () | 62206..63078 | + | 873 | WP_185707994.1 | HAD hydrolase-like protein | - |
| H3V42_RS33150 () | 63596..64477 | - | 882 | WP_022684008.1 | amidohydrolase family protein | - |
| H3V42_RS33155 () | 64479..65525 | - | 1047 | WP_185707996.1 | 4-oxalomesaconate tautomerase | - |
| H3V42_RS33160 () | 65554..66318 | - | 765 | WP_006949122.1 | IS6 family transposase IS6100 | Transposase |
| H3V42_RS33165 () | 66494..67360 | + | 867 | WP_086485392.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| H3V42_RS33170 () | 67389..68507 | - | 1119 | WP_159368327.1 | Pesticin receptor | VF |
| H3V42_RS33175 () | 68627..70987 | - | 2361 | WP_159368326.1 | Pesticin receptor | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|