MGE detailed information
MGE type: Prophage MGE length: 34205 bp
Accession: NZ_CP060117 Location: 2371555..2405759 Organism: Shigella sonnei strain UKMCC_1015 Replicon: chromosome
Accession: NZ_CP060117 Location: 2371555..2405759 Organism: Shigella sonnei strain UKMCC_1015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYI41_RS11630 () | 2367638..2368279 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HYI41_RS11635 () | 2368335..2369513 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HYI41_RS11640 () | 2369647..2369937 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| HYI41_RS11645 () | 2370004..2370360 | + | 357 | WP_001295500.1 | protein YebF | - |
| HYI41_RS11650 () | 2370687..2371346 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| HYI41_RS11655 () | 2371555..2373615 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| HYI41_RS11660 () | 2373612..2374274 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HYI41_RS11665 () | 2374298..2374954 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HYI41_RS11670 () | 2375056..2375286 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HYI41_RS11675 () | 2375425..2375799 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| HYI41_RS11680 () | 2375803..2376675 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| HYI41_RS11685 () | 2376688..2377029 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2377057..2377291 | - | 235 | - | - | Antitoxin Detail |
| - | 2377187..2377290 | + | 104 | - | - | Toxin Detail |
| HYI41_RS11690 () | 2377422..2378498 | - | 1077 | WP_140046268.1 | hypothetical protein ; Integrase | Integrase |
| HYI41_RS11700 () | 2379375..2380532 | - | 1158 | Protein_2269 | IS3 family transposase IS600 | Transposase |
| HYI41_RS11705 () | 2380595..2380711 | - | 117 | Protein_2270 | host-nuclease inhibitor Gam family protein | - |
| HYI41_RS11710 () | 2380689..2381009 | - | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
| HYI41_RS11715 () | 2381257..2382413 | + | 1157 | WP_094096605.1 | IS3 family transposase IS600 | Transposase |
| HYI41_RS11725 () | 2383781..2385487 | - | 1707 | WP_000936825.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| HYI41_RS11735 () | 2387505..2387678 | + | 174 | Protein_2276 | metallophosphoesterase | - |
| HYI41_RS11745 () | 2388444..2388749 | + | 306 | Protein_2278 | serine/threonine-protein phosphatase | - |
| HYI41_RS11750 () | 2388807..2389963 | + | 1157 | WP_094096605.1 | IS3 family transposase IS600 | Transposase |
| HYI41_RS11755 () | 2390005..2390205 | + | 201 | Protein_2280 | serine/threonine-protein phosphatase | - |
| HYI41_RS11760 () | 2390206..2390397 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HYI41_RS11765 () | 2390502..2390660 | - | 159 | Protein_2282 | DUF1480 family protein | - |
| HYI41_RS11770 () | 2390718..2391415 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| HYI41_RS11775 () | 2391432..2391515 | - | 84 | Protein_2284 | DUF1480 family protein | - |
| HYI41_RS11780 () | 2391633..2393072 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HYI41_RS11785 () | 2393153..2395786 | - | 2634 | WP_005138565.1 | hypothetical protein | VF |
| HYI41_RS11790 () | 2395755..2397038 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| HYI41_RS11795 () | 2397168..2397665 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| HYI41_RS11800 () | 2397762..2398460 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| HYI41_RS11805 () | 2398480..2400528 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| HYI41_RS11810 () | 2400720..2401601 | + | 882 | WP_000984517.1 | protease HtpX | - |
| HYI41_RS11815 () | 2401647..2402710 | - | 1064 | Protein_2292 | MFS transporter | - |
| HYI41_RS11820 () | 2402887..2403678 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| HYI41_RS11825 () | 2403821..2404060 | - | 240 | WP_001211011.1 | YobH family protein | - |
| HYI41_RS11830 () | 2404219..2404362 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| HYI41_RS11835 () | 2404437..2404724 | + | 288 | WP_001006860.1 | YebO family protein | - |
| HYI41_RS11840 () | 2405394..2405537 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| HYI41_RS11845 () | 2405550..2405759 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HYI41_RS11850 () | 2405925..2406734 | + | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HYI41_RS11855 () | 2406731..2407297 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| HYI41_RS11860 () | 2407726..2408184 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| HYI41_RS11865 () | 2408239..2409090 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| HYI41_RS11870 () | 2409103..2409903 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|