MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40194 bp
Accession: NZ_CP059957 Location: 3683374..3723567 Organism: Pectobacterium brasiliense strain IPO:4071 NAK:240 Replicon: chromosome
Accession: NZ_CP059957 Location: 3683374..3723567 Organism: Pectobacterium brasiliense strain IPO:4071 NAK:240 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A30_RS16390 () | 3678707..3679615 | - | 909 | WP_039516916.1 | lipid kinase | - |
| H5A30_RS16395 () | 3679899..3681374 | + | 1476 | WP_119870550.1 | sensor domain-containing diguanylate cyclase | - |
| H5A30_RS16400 () | 3681457..3681624 | - | 168 | WP_010280855.1 | YqaE/Pmp3 family membrane protein | - |
| H5A30_RS16405 () | 3681779..3682165 | + | 387 | WP_014914890.1 | lysozyme inhibitor LprI family protein | - |
| H5A30_RS16415 () | 3682406..3683203 | + | 798 | WP_119870413.1 | DgsA anti-repressor MtfA | - |
| H5A30_RS16425 () | 3683551..3684822 | + | 1272 | WP_119870412.1 | Prophage integrase IntA ; Integrase | Integrase |
| H5A30_RS16430 () | 3684956..3685270 | - | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| H5A30_RS16435 () | 3685456..3685770 | - | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| H5A30_RS16440 () | 3685917..3686189 | + | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| H5A30_RS16445 () | 3686604..3687521 | + | 918 | WP_119870410.1 | hypothetical protein | - |
| H5A30_RS16450 () | 3687675..3687869 | + | 195 | WP_025918863.1 | AlpA family transcriptional regulator | - |
| H5A30_RS16455 () | 3687886..3688470 | + | 585 | WP_119870409.1 | DUF2857 domain-containing protein | - |
| H5A30_RS16460 () | 3688460..3688669 | + | 210 | WP_119870408.1 | TraR/DksA family transcriptional regulator | - |
| H5A30_RS16465 () | 3688814..3690496 | - | 1683 | WP_199679133.1 | ATP-binding protein | - |
| H5A30_RS16470 () | 3690513..3691724 | - | 1212 | WP_119870406.1 | hypothetical protein | - |
| H5A30_RS16475 () | 3692372..3692593 | + | 222 | WP_205530069.1 | hypothetical protein | - |
| H5A30_RS16480 () | 3692672..3693337 | + | 666 | WP_119870405.1 | Type IV secretion system protein virB1 | VF |
| H5A30_RS16485 () | 3693334..3693615 | + | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| H5A30_RS16490 () | 3693625..3696372 | + | 2748 | WP_119870404.1 | Type IV secretion system protein virB4 | VF |
| H5A30_RS16495 () | 3696396..3697112 | + | 717 | WP_119870403.1 | type IV secretion system protein | - |
| H5A30_RS16500 () | 3697123..3697347 | + | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| H5A30_RS16505 () | 3697359..3698399 | + | 1041 | WP_119870402.1 | type IV secretion system protein | - |
| H5A30_RS16510 () | 3698487..3698627 | + | 141 | WP_025918851.1 | hypothetical protein | - |
| H5A30_RS16515 () | 3698620..3699303 | + | 684 | WP_119870401.1 | type IV secretion system protein | - |
| H5A30_RS16520 () | 3699303..3700193 | + | 891 | WP_119870400.1 | P-type conjugative transfer protein VirB9 | - |
| H5A30_RS16525 () | 3700190..3701413 | + | 1224 | WP_119870399.1 | Type IV secretion system protein virB10 | VF |
| H5A30_RS16530 () | 3701403..3702419 | + | 1017 | WP_119870398.1 | Type IV secretion system protein VirB11 | VF |
| H5A30_RS16535 () | 3702463..3702765 | + | 303 | WP_119870397.1 | conjugal transfer protein | - |
| H5A30_RS16540 () | 3703490..3705352 | + | 1863 | WP_119870396.1 | type IV secretory system conjugative DNA transfer family protein | - |
| H5A30_RS16545 () | 3705361..3706107 | + | 747 | WP_119870395.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H5A30_RS16550 () | 3706304..3706846 | + | 543 | WP_119870394.1 | DUF3916 domain-containing protein | - |
| H5A30_RS16555 () | 3707009..3708007 | - | 999 | WP_119870393.1 | hypothetical protein | - |
| H5A30_RS16560 () | 3708431..3708745 | - | 315 | WP_119870392.1 | CcdB family protein | Toxin Detail |
| H5A30_RS16565 () | 3708748..3708984 | - | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| H5A30_RS16570 () | 3709304..3710248 | - | 945 | WP_119870391.1 | DUF1738 domain-containing protein | - |
| H5A30_RS16575 () | 3711013..3713322 | + | 2310 | WP_119870906.1 | TerB N-terminal domain-containing protein | - |
| H5A30_RS16580 () | 3713326..3714639 | + | 1314 | WP_119870905.1 | ATP-binding protein | - |
| H5A30_RS16585 () | 3714636..3716834 | + | 2199 | WP_119870904.1 | DEAD/DEAH box helicase | - |
| H5A30_RS16590 () | 3717499..3717672 | + | 174 | WP_119870910.1 | DNA cytosine methyltransferase | - |
| H5A30_RS16595 () | 3717842..3719440 | - | 1599 | WP_119870903.1 | TIGR04141 family sporadically distributed protein | - |
| H5A30_RS16600 () | 3720188..3721456 | - | 1269 | WP_119870902.1 | hypothetical protein | - |
| H5A30_RS16605 () | 3721679..3722677 | - | 999 | WP_127110943.1 | hypothetical protein | - |
| H5A30_RS16610 () | 3723742..3723906 | + | 165 | Protein_3241 | DUF4102 domain-containing protein | - |
| H5A30_RS16615 () | 3724451..3728484 | + | 4034 | Protein_3242 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|