NZ_CP0598354117137..4284972

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 167836 bp
Accession: NZ_CP059835        Location: 4117137..4284972         Organism: Escherichia coli strain tcmA_3       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GQF93_RS20070 (4115281) 4115281..4116579 + 1299 WP_000230376.1 alpha-ketoglutarate permease -
GQF93_RS20075 (4116576) 4116576..4116899 - 324 WP_001300818.1 YfiM family lipoprotein -
GQF93_RS20080 (4116945) 4116945..4118300 - 1356 WP_000949265.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
GQF93_RS27765 (4118284) 4118284..4118325 - 42 Protein_3964 hypothetical protein -
GQF93_RS20085 (4118414) 4118414..4121074 - 2661 WP_000082964.1 protein lysine acetyltransferase -
GQF93_RS20090 (4121106) 4121106..4121804 - 699 WP_000138184.1 tRNA-uridine aminocarboxypropyltransferase -
GQF93_RS20095 (4121873) 4121873..4122292 - 420 WP_001098726.1 thioredoxin TrxC -
GQF93_RS20100 (4122499) 4122499..4123536 + 1038 WP_000997403.1 tRNA/rRNA methyltransferase -
GQF93_RS20105 (4123584) 4123584..4124273 - 690 WP_001262723.1 uracil-DNA glycosylase -
GQF93_RS20110 (4124578) 4124578..4124961 + 384 WP_000627807.1 autonomous glycyl radical cofactor GrcA -
GQF93_RS20115 (4125017) 4125017..4125604 - 588 WP_000189221.1 cysteine/O-acetylserine transporter -
GQF93_RS20120 (4125707) 4125707..4126588 + 882 WP_001437780.1 LysR family transcriptional regulator -
GQF93_RS20125 (4126797) 4126797..4128131 - 1335 WP_000219193.1 ATP-dependent RNA helicase SrmB -
GQF93_RS20130 (4128263) 4128263..4129000 + 738 WP_001298974.1 tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN -
GQF93_RS20135 (4128985) 4128985..4130607 - 1623 WP_001094499.1 L-aspartate oxidase -
GQF93_RS20140 (4130863) 4130863..4131018 + 156 WP_001303621.1 rpoE leader peptide RseD -
GQF93_RS20145 (4131015) 4131015..4131590 + 576 WP_001295364.1 ECF RNA polymerase sigma-E factor VF
GQF93_RS20150 (4131623) 4131623..4132273 + 651 WP_001168459.1 Anti-sigma-E factor RseA VF
GQF93_RS20155 (4132273) 4132273..4133229 + 957 WP_000812053.1 Sigma-E factor regulatory protein RseB VF
GQF93_RS20160 (4133226) 4133226..4133705 + 480 WP_000589070.1 Protein RseC VF
GQF93_RS20165 (4133903) 4133903..4135702 + 1800 WP_135564685.1 translation elongation factor 4 -
GQF93_RS20170 (4135718) 4135718..4136692 + 975 WP_000002542.1 signal peptidase I -
GQF93_RS20175 (4136965) 4136965..4137645 + 681 WP_001068343.1 ribonuclease III -
GQF93_RS20180 (4137642) 4137642..4138547 + 906 WP_000020737.1 GTPase Era -
GQF93_RS20185 (4138559) 4138559..4139287 + 729 WP_000399393.1 DNA repair protein RecO -
GQF93_RS20190 (4139299) 4139299..4140030 + 732 WP_001297412.1 Pyridoxine 5'-phosphate synthase VF
GQF93_RS20195 (4140030) 4140030..4140410 + 381 WP_000986029.1 holo-ACP synthase -
- (4140431) 4140431..4140507 - 77 NuclAT_10 - -
- (4140431) 4140431..4140507 - 77 NuclAT_10 - -
- (4140431) 4140431..4140507 - 77 NuclAT_10 - -
- (4140431) 4140431..4140507 - 77 NuclAT_10 - -
GQF93_RS20200 (4140830) 4140830..4140910 + 81 WP_000128776.1 type I toxin-antitoxin system toxin ShoB -
GQF93_RS20205 (4141104) 4141104..4141364 - 261 WP_001196283.1 4Fe-4S dicluster ferredoxin YfhL -
GQF93_RS20210 (4141420) 4141420..4142268 - 849 WP_001013779.1 MurR/RpiR family transcriptional regulator -
GQF93_RS20215 (4142477) 4142477..4143055 + 579 WP_212487257.1 phosphatidylglycerophosphatase C -
GQF93_RS20220 (4143170) 4143170..4143673 + 504 WP_212487259.1 tRNA adenosine(34) deaminase TadA -
GQF93_RS20225 (4143670) 4143670..4145226 - 1557 WP_000734212.1 membrane-bound lytic murein transglycosylase MltF -
GQF93_RS20230 (4145484) 4145484..4149371 + 3888 WP_000970116.1 phosphoribosylformylglycinamidine synthase -
GQF93_RS20235 (4149929) 4149929..4151356 + 1428 WP_001297612.1 two component system sensor histidine kinase QseE/GlrK -
GQF93_RS20240 (4151521) 4151521..4152234 + 714 WP_001345753.1 two-component system QseEF-associated lipoprotein QseG -
GQF93_RS20245 (4152224) 4152224..4153558 + 1335 WP_001298983.1 Transcriptional regulatory protein GlrR VF
GQF93_RS20250 (4153619) 4153619..4153957 + 339 WP_000717694.1 nitrogen regulatory protein P-II -
GQF93_RS20255 (4154002) 4154002..4155192 - 1191 WP_000883122.1 NO-inducible flavohemoprotein -
GQF93_RS20260 (4155520) 4155520..4156773 + 1254 WP_000919159.1 serine hydroxymethyltransferase -
GQF93_RS20265 (4156837) 4156837..4158030 - 1194 WP_001330942.1 ROK family protein -
GQF93_RS20270 (4158148) 4158148..4161429 + 3282 WP_001358404.1 DUF5107 domain-containing protein -
GQF93_RS20275 (4161526) 4161526..4162509 + 984 WP_001124918.1 substrate-binding domain-containing protein -
GQF93_RS20280 (4162532) 4162532..4164043 + 1512 WP_212487261.1 sugar ABC transporter ATP-binding protein -
GQF93_RS20285 (4164068) 4164068..4165066 + 999 WP_001276691.1 ABC transporter permease -
GQF93_RS20290 (4165099) 4165099..4166193 + 1095 WP_000700816.1 zinc-binding dehydrogenase -
GQF93_RS20295 (4166205) 4166205..4167077 + 873 WP_000158547.1 aldose 1-epimerase -
GQF93_RS20300 (4167125) 4167125..4167547 - 423 WP_001094726.1 DoxX family protein -
GQF93_RS20305 (4167644) 4167644..4168846 - 1203 WP_000660797.1 phenylpropionate dioxygenase ferredoxin reductase subunit -
GQF93_RS20310 (4168856) 4168856..4169668 - 813 WP_001281377.1 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase -
GQF93_RS20315 (4169665) 4169665..4169985 - 321 WP_001080102.1 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit -
GQF93_RS20320 (4169985) 4169985..4170503 - 519 WP_001276072.1 3-phenylpropionate/cinnamic acid dioxygenase subunit beta -
GQF93_RS20325 (4170500) 4170500..4171861 - 1362 WP_000211172.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
GQF93_RS20330 (4171997) 4171997..4172887 + 891 WP_000423257.1 DNA-binding transcriptional regulator HcaR -
GQF93_RS20335 (4173047) 4173047..4174186 + 1140 WP_000244193.1 3-phenylpropionate MFS transporter -
GQF93_RS20340 (4174178) 4174178..4175458 - 1281 WP_000983009.1 stationary phase inducible protein CsiE -
GQF93_RS20345 (4175649) 4175649..4176503 - 855 WP_001299515.1 alpha/beta hydrolase -
GQF93_RS20350 (4176648) 4176648..4177451 - 804 WP_000553451.1 inositol-1-monophosphatase -
GQF93_RS20355 (4177570) 4177570..4178307 + 738 WP_212487263.1 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ -
GQF93_RS20360 (4178608) 4178608..4179096 + 489 WP_001241356.1 Fe-S cluster assembly transcriptional regulator IscR -
GQF93_RS20365 (4179208) 4179208..4180422 + 1215 WP_001295373.1 cysteine desulfurase -
GQF93_RS20370 (4180450) 4180450..4180836 + 387 WP_000331707.1 Fe-S cluster assembly scaffold IscU -
GQF93_RS20375 (4180853) 4180853..4181176 + 324 WP_000028953.1 iron-sulfur cluster assembly protein IscA -
GQF93_RS20380 (4181272) 4181272..4181787 + 516 WP_000384411.1 co-chaperone HscB -
GQF93_RS20385 (4181804) 4181804..4183654 + 1851 WP_001196613.1 Fe-S protein assembly chaperone HscA -
GQF93_RS20390 (4183656) 4183656..4183991 + 336 WP_001124469.1 ISC system 2Fe-2S type ferredoxin -
GQF93_RS20395 (4184003) 4184003..4184203 + 201 WP_000523616.1 Fe-S cluster assembly protein IscX -
GQF93_RS20400 (4184381) 4184381..4185664 + 1284 WP_137460973.1 aminopeptidase PepB -
GQF93_RS20405 (4185806) 4185806..4186582 + 777 WP_001298978.1 enhanced serine sensitivity protein SseB -
GQF93_RS28070 (4186614) 4186614..4186739 - 126 WP_001385884.1 small toxic inner membrane protein TimP -
GQF93_RS20410 (4187075) 4187075..4187920 - 846 WP_000108626.1 3-mercaptopyruvate sulfurtransferase -
GQF93_RS20415 (4188127) 4188127..4193088 + 4962 WP_000736304.1 alpha2-macroglobulin -
GQF93_RS20420 (4193089) 4193089..4195401 + 2313 WP_001137682.1 peptidoglycan glycosyltransferase PbpC -
GQF93_RS20425 (4195550) 4195550..4195981 + 432 WP_000963837.1 nucleoside-diphosphate kinase -
GQF93_RS20430 (4196131) 4196131..4197285 + 1155 WP_000003317.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
GQF93_RS20435 (4197570) 4197570..4198583 + 1014 WP_001090850.1 cytoskeleton protein RodZ -
GQF93_RS20440 (4198610) 4198610..4199728 + 1119 WP_000551807.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
GQF93_RS20445 (4199839) 4199839..4201113 + 1275 WP_001107182.1 histidine--tRNA ligase -
GQF93_RS20450 (4201131) 4201131..4201751 + 621 WP_000409205.1 ancillary SecYEG translocon subunit YfgM -
GQF93_RS20455 (4201762) 4201762..4202940 + 1179 WP_001177048.1 outer membrane protein assembly factor BamB -
GQF93_RS20460 (4203058) 4203058..4204530 + 1473 WP_000249410.1 ribosome biogenesis GTPase Der -
GQF93_RS20465 (4204599) 4204599..4204814 + 216 WP_001297332.1 zinc ribbon domain-containing protein -
GQF93_RS20470 (4204811) 4204811..4206181 - 1371 WP_000937890.1 exodeoxyribonuclease VII large subunit -
GQF93_RS20475 (4206343) 4206343..4207809 + 1467 WP_001299507.1 IMP dehydrogenase -
GQF93_RS20480 (4207878) 4207878..4209455 + 1578 WP_000138282.1 glutamine-hydrolyzing GMP synthase -
GQF93_RS20485 (4209764) 4209764..4210972 + 1209 WP_024248387.1 Prophage integrase IntA ; Integrase Integrase
GQF93_RS20490 (4211258) 4211258..4211488 + 231 WP_137460971.1 AlpA family phage regulatory protein -
GQF93_RS20495 (4211728) 4211728..4212627 + 900 WP_223366869.1 replication initiator protein A -
GQF93_RS20500 (4213705) 4213705..4214031 - 327 WP_212487265.1 hypothetical protein -
GQF93_RS20505 (4214034) 4214034..4215635 - 1602 WP_212487267.1 P-type conjugative transfer protein TrbL -
GQF93_RS20510 (4215638) 4215638..4215820 - 183 WP_004690111.1 hypothetical protein -
GQF93_RS20515 (4215823) 4215823..4216614 - 792 WP_137460970.1 P-type conjugative transfer protein TrbJ -
GQF93_RS20520 (4216883) 4216883..4217107 - 225 WP_016943284.1 hypothetical protein -
GQF93_RS20525 (4217110) 4217110..4217319 - 210 WP_000101767.1 TraC family protein -
GQF93_RS20530 (4217805) 4217805..4218182 + 378 WP_137460969.1 conjugal transfer protein TraJ -
GQF93_RS20535 (4218298) 4218298..4220445 + 2148 WP_227524304.1 P-loop NTPase fold protein -
GQF93_RS20540 (4220661) 4220661..4221575 + 915 WP_227501394.1 hypothetical protein -
GQF93_RS20545 (4221611) 4221611..4221808 + 198 WP_032417397.1 hypothetical protein -
GQF93_RS20550 (4222002) 4222002..4222541 - 540 WP_000755173.1 DUF5384 family protein -
GQF93_RS20555 (4222557) 4222557..4223075 - 519 WP_001317257.1 glycine zipper 2TM domain-containing protein -
GQF93_RS20560 (4223386) 4223386..4223577 - 192 WP_000075999.1 YfgG family protein -
GQF93_RS20565 (4223595) 4223595..4223747 + 153 WP_000017550.1 hypothetical protein -
GQF93_RS20570 (4223929) 4223929..4226172 + 2244 WP_000772775.1 Cyclic di-GMP phosphodiesterase PdeF VF
GQF93_RS20575 (4226211) 4226211..4227752 - 1542 WP_001121363.1 exopolyphosphatase -
GQF93_RS20580 (4227757) 4227757..4229823 - 2067 WP_000529576.1 polyphosphate kinase 1 -
GQF93_RS20585 (4229994) 4229994..4230632 - 639 WP_001028614.1 phosphoribosylglycinamide formyltransferase -
GQF93_RS20590 (4230632) 4230632..4231669 - 1038 WP_001295474.1 Phosphoribosylformylglycinamidine cyclo-ligase VF
GQF93_RS20595 (4231994) 4231994..4232620 + 627 WP_001295473.1 uracil phosphoribosyltransferase -
GQF93_RS20600 (4232706) 4232706..4233995 + 1290 WP_000198328.1 uracil permease -
GQF93_RS20605 (4234090) 4234090..4234791 + 702 WP_001307333.1 DnaA inactivator Hda -
GQF93_RS20610 (4234929) 4234929..4235288 - 360 WP_000166449.1 arsenate reductase (glutaredoxin) -
GQF93_RS20615 (4235309) 4235309..4236772 - 1464 WP_000489667.1 beta-barrel assembly-enhancing protease -
GQF93_RS20620 (4236985) 4236985..4238046 + 1062 WP_000892044.1 AI-2E family transporter -
GQF93_RS20630 (4238084) 4238084..4238931 - 848 Protein_4074 formate transporter FocB -
GQF93_RS20635 (4238953) 4238953..4240965 - 2013 WP_001251558.1 DNA-binding transcriptional activator HyfR VF
GQF93_RS20640 (4240995) 4240995..4241408 - 414 WP_212487269.1 formate hydrogenlyase maturation HycH family protein -
GQF93_RS20645 (4241401) 4241401..4242159 - 759 WP_137460968.1 hydrogenase 4 catalytic subunit HyfI -
GQF93_RS20650 (4242156) 4242156..4242695 - 540 WP_000916082.1 hydrogenase 4 subunit H -
GQF93_RS20655 (4242705) 4242705..4244420 - 1716 WP_097432821.1 hydrogenase 4 catalytic subunit HyfG -
GQF93_RS20660 (4244410) 4244410..4245990 - 1581 WP_000122538.1 hydrogenase 4 subunit F -
GQF93_RS20665 (4245995) 4245995..4246645 - 651 WP_097432820.1 hydrogenase 4 membrane subunit -
GQF93_RS20670 (4246657) 4246657..4248094 - 1438 Protein_4082 hydrogenase 4 subunit HyfD -
GQF93_RS20680 (4248111) 4248111..4249058 - 948 WP_001358398.1 hydrogenase 4 subunit HyfC -
GQF93_RS20685 (4249069) 4249069..4250837 - 1769 Protein_4084 hydrogenase 4 subunit B -
GQF93_RS20690 (4251086) 4251086..4251703 - 618 WP_001352202.1 hydrogenase 4 subunit HyfA -
GQF93_RS20695 (4251956) 4251956..4252426 - 471 WP_001068682.1 thioredoxin-dependent thiol peroxidase -
GQF93_RS20700 (4252426) 4252426..4252998 - 573 WP_000176187.1 glycine cleavage system transcriptional repressor -
GQF93_RS20705 (4253144) 4253144..4254022 + 879 WP_001295469.1 4-hydroxy-tetrahydrodipicolinate synthase -
GQF93_RS20710 (4254039) 4254039..4255073 + 1035 WP_001358397.1 outer membrane protein assembly factor BamC -
GQF93_RS20715 (4255286) 4255286..4255999 + 714 WP_001295467.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
GQF93_RS20720 (4256153) 4256153..4256380 + 228 WP_000450524.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
GQF93_RS20725 (4256380) 4256380..4256778 + 399 WP_000911330.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
GQF93_RS20730 (4256925) 4256925..4257788 + 864 WP_001267508.1 neutral zinc metallopeptidase -
GQF93_RS20735 (4257803) 4257803..4259818 + 2016 WP_097432819.1 tRNA cytosine(34) acetyltransferase TmcA -
GQF93_RS20740 (4259892) 4259892..4260590 + 699 WP_000679823.1 esterase -
GQF93_RS20745 (4260700) 4260700..4260900 - 201 WP_000383836.1 YpfN family protein -
GQF93_RS20750 (4260928) 4260928..4262055 - 1128 WP_001277801.1 succinyl-diaminopimelate desuccinylase -
GQF93_RS20755 (4262059) 4262059..4262415 - 357 WP_000258247.1 ArsC family reductase -
GQF93_RS20760 (4262796) 4262796..4262855 + 60 WP_001386977.1 protein YpfM -
GQF93_RS20765 (4262954) 4262954..4266067 - 3114 WP_212487271.1 Multidrug efflux pump subunit AcrB VF
GQF93_RS20770 (4266231) 4266231..4267931 - 1701 WP_000636129.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
GQF93_RS20775 (4268137) 4268137..4270116 + 1980 WP_001078870.1 formate-dependent uric acid utilization protein AegA -
GQF93_RS20780 (4270184) 4270184..4270759 + 576 WP_000193711.1 GDP-mannose pyrophosphatase NudK -
GQF93_RS20785 (4270885) 4270885..4271928 + 1044 WP_001270524.1 DUF1176 domain-containing protein -
GQF93_RS20790 (4272024) 4272024..4274027 - 2004 WP_212487273.1 transketolase -
GQF93_RS20795 (4274047) 4274047..4274997 - 951 WP_001003709.1 transaldolase -
GQF93_RS20800 (4275286) 4275286..4277565 + 2280 WP_000342642.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
GQF93_RS20805 (4277858) 4277858..4278193 + 336 WP_000356956.1 ethanolamine utilization microcompartment protein EutS -
GQF93_RS20810 (4278206) 4278206..4278685 + 480 WP_000820782.1 ethanolamine utilization acetate kinase EutP -
GQF93_RS20815 (4278660) 4278660..4279361 + 702 WP_000733903.1 ethanolamine utilization acetate kinase EutQ -
GQF93_RS20820 (4279358) 4279358..4280161 + 804 WP_000651298.1 ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT -
GQF93_RS20825 (4280158) 4280158..4281174 + 1017 WP_000582977.1 phosphate acetyltransferase -
GQF93_RS20830 (4281213) 4281213..4281506 + 294 WP_000387713.1 ethanolamine utilization microcompartment protein EutM -
GQF93_RS20835 (4281613) 4281613..4281900 + 288 WP_000762196.1 ethanolamine utilization microcompartment protein EutN -
GQF93_RS20840 (4281912) 4281912..4283315 + 1404 WP_212487275.1 Aldehyde-alcohol dehydrogenase VF
GQF93_RS20845 (4283326) 4283326..4284162 + 837 WP_000929709.1 ethanolamine utilization protein EutJ -
GQF93_RS20850 (4284152) 4284152..4285339 + 1188 WP_001297322.1 ethanolamine utilization ethanol dehydrogenase EutG -
GQF93_RS20855 (4285456) 4285456..4286682 + 1227 WP_000512372.1 ethanolamine utilization protein EutH -
GQF93_RS20860 (4286679) 4286679..4288082 + 1404 WP_001097478.1 ethanolamine ammonia-lyase reactivating factor EutA -
GQF93_RS20865 (4288094) 4288094..4289455 + 1362 WP_000769961.1 ethanolamine ammonia-lyase subunit alpha -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance