MGE detailed information
MGE type: Conjugative plasmid MGE length: 140350 bp
Accession: NZ_CP059282 Location: 1..140350 Organism: Escherichia coli strain C9 Replicon: plasmid pC9
Accession: NZ_CP059282 Location: 1..140350 Organism: Escherichia coli strain C9 Replicon: plasmid pC9
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0272_RS24095 () | 433..1308 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| H0272_RS24100 () | 1316..2092 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| H0272_RS24105 () | 2261..4522 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| H0272_RS24110 () | 4591..5766 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| H0272_RS24115 () | 6289..6594 | - | 306 | Protein_5 | IS91 family transposase ISSbo1 | Transposase |
| H0272_RS24120 () | 6620..7359 | + | 740 | Protein_6 | IS3 family transposase IS629 | Transposase |
| H0272_RS24125 () | 8032..9540 | + | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| H0272_RS24130 () | 9630..10013 | + | 384 | Protein_8 | IS3 family transposase IS629 | Transposase |
| H0272_RS24135 () | 10042..10446 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| H0272_RS24140 () | 10443..10790 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| H0272_RS24145 () | 10839..11784 | + | 946 | Protein_11 | IS66 family transposase ISEc8 | Transposase |
| H0272_RS24150 () | 11870..12892 | + | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| H0272_RS24155 () | 12892..13671 | + | 780 | WP_001323403.1 | IS21 family transposase IS100kyp | Transposase |
| H0272_RS24160 () | 13739..14347 | + | 609 | Protein_14 | IS66 family transposase ISEc22 | Transposase |
| H0272_RS24165 () | 14442..16055 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| H0272_RS24170 () | 16086..16436 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| H0272_RS24175 () | 16433..16858 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| H0272_RS24180 () | 16950..17741 | - | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| H0272_RS24185 () | 17748..19718 | - | 1971 | WP_001298664.1 | Hemin receptor | VF |
| H0272_RS24190 () | 20000..20436 | + | 437 | Protein_20 | IS3 family transposase IS2 | Transposase |
| H0272_RS24195 () | 20961..21233 | + | 273 | WP_001322642.1 | Major pilu subunit operon regulatory protein PapB | VF |
| H0272_RS24200 () | 21679..21854 | + | 176 | Protein_22 | IS3 family transposase | - |
| H0272_RS24205 () | 22080..23249 | - | 1170 | WP_001072358.1 | hypothetical protein | - |
| H0272_RS24210 () | 23616..23804 | + | 189 | WP_001309252.1 | hypothetical protein | - |
| H0272_RS24215 () | 23925..24665 | + | 741 | WP_033550837.1 | tyrosine-type recombinase/integrase | - |
| H0272_RS24220 () | 24950..25927 | - | 978 | WP_033550836.1 | RepB family plasmid replication initiator protein | - |
| H0272_RS24225 () | 26767..27408 | - | 642 | WP_033550835.1 | hypothetical protein | - |
| H0272_RS24230 () | 29524..29814 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| H0272_RS24235 () | 29804..30703 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| H0272_RS24240 () | 30753..32978 | - | 2226 | WP_000698737.1 | phage T7 exclusion protein | - |
| H0272_RS24245 () | 32980..34068 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| H0272_RS24250 () | 34648..34866 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| H0272_RS24255 () | 34868..35173 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| H0272_RS24260 () | 35174..35980 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| H0272_RS24265 () | 36754..37509 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| H0272_RS24270 () | 38097..39263 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| H0272_RS24275 () | 39263..40234 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| H0272_RS24280 () | 41101..42003 | + | 903 | WP_077727434.1 | DUF1281 domain-containing protein | - |
| H0272_RS24285 () | 42007..42311 | + | 305 | Protein_39 | hypothetical protein | - |
| H0272_RS24290 () | 42388..43071 | + | 684 | WP_000086185.1 | DNA methylase | - |
| H0272_RS24295 () | 43072..43293 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| H0272_RS24300 () | 43307..43741 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| H0272_RS24305 () | 43792..44568 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| H0272_RS24310 () | 44645..45757 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| H0272_RS24315 () | 46457..46759 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| H0272_RS24320 () | 46806..47228 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| H0272_RS24325 () | 47225..47416 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| H0272_RS24330 () | 47689..47937 | - | 249 | WP_071556315.1 | hypothetical protein | - |
| H0272_RS24335 () | 48451..48681 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| H0272_RS24340 () | 48733..50094 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| H0272_RS24345 () | 50142..50705 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| H0272_RS24350 () | 50731..50943 | + | 213 | WP_001348622.1 | hypothetical protein | - |
| H0272_RS24355 () | 51106..51441 | + | 336 | WP_013023883.1 | hypothetical protein | - |
| H0272_RS24360 () | 52238..54139 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| H0272_RS24365 () | 54289..54786 | + | 498 | WP_042045560.1 | single-stranded DNA-binding protein | - |
| H0272_RS24370 () | 54849..55082 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| H0272_RS24375 () | 55148..57106 | + | 1959 | WP_042045562.1 | ParB/RepB/Spo0J family partition protein | - |
| H0272_RS24380 () | 57161..57595 | + | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| H0272_RS24385 () | 57592..58311 | + | 720 | WP_033550421.1 | plasmid SOS inhibition protein A | - |
| - () | 58323..58425 | + | 103 | NuclAT_1 | - | - |
| - () | 58323..58425 | + | 103 | NuclAT_1 | - | - |
| - () | 58323..58425 | + | 103 | NuclAT_1 | - | - |
| - () | 58323..58425 | + | 103 | NuclAT_1 | - | - |
| H0272_RS24390 () | 58471..59840 | + | 1370 | WP_085947770.1 | IS3 family transposase IS150 | Transposase |
| - () | 59867..59994 | + | 128 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59867..59994 | + | 128 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59867..59994 | + | 128 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59867..59994 | + | 128 | NuclAT_0 | - | Antitoxin Detail |
| - () | 59927..59992 | - | 66 | - | - | Antitoxin Detail |
| H0272_RS24395 () | 60038..60196 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| H0272_RS24400 () | 60639..60974 | + | 336 | WP_013023876.1 | hypothetical protein | - |
| H0272_RS24405 () | 60887..61093 | + | 207 | WP_000275859.1 | hypothetical protein | - |
| H0272_RS24410 () | 61118..61405 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| H0272_RS24415 () | 61524..62345 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| H0272_RS24420 () | 62642..63244 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| H0272_RS24425 () | 63574..63957 | + | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| H0272_RS24430 () | 64091..64768 | + | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| H0272_RS24435 () | 64856..65083 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| H0272_RS24440 () | 65117..65476 | + | 360 | WP_024210418.1 | type IV conjugative transfer system pilin TraA | - |
| H0272_RS24445 () | 65491..65802 | + | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| H0272_RS24450 () | 65824..66390 | + | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| H0272_RS24455 () | 66401..67105 | + | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| H0272_RS24460 () | 67105..68556 | + | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| H0272_RS24465 () | 68525..69112 | + | 588 | WP_071587349.1 | conjugal transfer protein TraP | - |
| H0272_RS24470 () | 69051..69410 | + | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| H0272_RS24475 () | 69410..69925 | + | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| H0272_RS24480 () | 70060..70281 | + | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| H0272_RS24485 () | 70441..73068 | + | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| H0272_RS24490 () | 73065..73451 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| H0272_RS24495 () | 73448..74080 | + | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| H0272_RS24500 () | 74077..75069 | + | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| H0272_RS24505 () | 75099..75404 | + | 306 | WP_000224413.1 | hypothetical protein | - |
| H0272_RS24510 () | 75413..76051 | + | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| H0272_RS24515 () | 76048..77898 | + | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| H0272_RS24520 () | 77925..78149 | + | 225 | WP_181464338.1 | conjugal transfer protein TrbE | - |
| H0272_RS24525 () | 78200..78897 | + | 698 | Protein_87 | IS1 family transposase IS1G | Transposase |
| H0272_RS24530 () | 78945..79265 | + | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| H0272_RS24535 () | 79392..79676 | + | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| H0272_RS24540 () | 79663..80208 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| H0272_RS24545 () | 80138..80485 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| H0272_RS24550 () | 80433..80858 | + | 426 | WP_001348758.1 | F-type conjugal transfer protein TrbF | - |
| H0272_RS24555 () | 80845..82218 | + | 1374 | WP_000944328.1 | conjugal transfer protein TraH | - |
| H0272_RS24560 () | 82215..85034 | + | 2820 | WP_001007062.1 | conjugal transfer mating pair stabilization protein TraG | - |
| H0272_RS24565 () | 85110..85807 | - | 698 | Protein_95 | IS1 family transposase IS1G | Transposase |
| H0272_RS24570 () | 85857..86327 | + | 471 | WP_181464339.1 | entry exclusion protein | - |
| H0272_RS24575 () | 86359..87090 | + | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| H0272_RS24580 () | 87293..88072 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| H0272_RS24585 () | 88069..90276 | + | 2208 | WP_021547900.1 | type IV conjugative transfer system coupling protein TraD | - |
| H0272_RS24590 () | 90276..95546 | + | 5271 | WP_042045338.1 | Multifunctional conjugation protein TraI | Relaxase |
| H0272_RS24595 () | 95566..96312 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| H0272_RS24600 () | 96367..96927 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| H0272_RS24605 () | 97058..97270 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| H0272_RS24610 () | 97783..98069 | + | 287 | Protein_104 | DUF2726 domain-containing protein | - |
| - () | 98036..98096 | - | 61 | NuclAT_2 | - | - |
| - () | 98036..98096 | - | 61 | NuclAT_2 | - | - |
| - () | 98036..98096 | - | 61 | NuclAT_2 | - | - |
| - () | 98036..98096 | - | 61 | NuclAT_2 | - | - |
| H0272_RS24615 () | 98141..98275 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | - |
| H0272_RS24620 () | 98572..98646 | + | 75 | WP_108401337.1 | hypothetical protein | - |
| H0272_RS24625 () | 98704..99450 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| H0272_RS24630 () | 99465..101006 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| H0272_RS24635 () | 101197..101412 | + | 216 | Protein_109 | replication regulatory protein RepA | - |
| H0272_RS24640 () | 101649..101723 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| H0272_RS24645 () | 101716..102573 | + | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| H0272_RS24650 () | 103513..104166 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| H0272_RS24655 () | 104259..104516 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| H0272_RS24660 () | 104449..104850 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| H0272_RS24665 () | 105099..105514 | + | 416 | Protein_115 | IS1 family transposase | - |
| H0272_RS24670 () | 105550..106095 | - | 546 | Protein_116 | Tn3 family transposase TnpA_Tn3 | Transposase |
| H0272_RS24675 () | 106161..106865 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| H0272_RS24680 () | 106877..108358 | - | 1482 | WP_024210412.1 | IS91 family transposase ISVsa3 | Transposase |
| H0272_RS24685 () | 108585..108926 | - | 342 | WP_023909256.1 | 60 kDa chaperonin 2 | VF |
| H0272_RS24690 () | 108887..109336 | - | 450 | WP_073518795.1 | hypothetical protein | - |
| H0272_RS24695 () | 109851..110021 | - | 171 | WP_170852050.1 | rRNA adenine methyltransferase | - |
| H0272_RS24700 () | 109966..110703 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| H0272_RS24705 () | 110829..110924 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| H0272_RS24710 () | 111059..111763 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| H0272_RS24715 () | 111885..112799 | + | 915 | WP_023063803.1 | hypothetical protein | ARG |
| H0272_RS24720 () | 112796..114034 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| H0272_RS24725 () | 114034..114618 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| H0272_RS24730 () | 115111..115875 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| H0272_RS24735 () | 115993..116058 | - | 66 | Protein_129 | EAL domain-containing protein | - |
| H0272_RS24740 () | 116102..116407 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| H0272_RS24745 () | 116418..117623 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| H0272_RS24750 () | 117779..117982 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| H0272_RS24755 () | 118110..118949 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| H0272_RS24760 () | 118943..119290 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| H0272_RS24765 () | 119496..120284 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| H0272_RS24770 () | 120415..120888 | - | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| H0272_RS24775 () | 121046..121591 | + | 546 | Protein_137 | IS91 family transposase ISAzo26 | Transposase |
| H0272_RS24780 () | 121656..122360 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| H0272_RS24785 () | 122410..122628 | - | 219 | Protein_139 | IS4 family transposase | - |
| H0272_RS24790 () | 122643..123340 | - | 698 | Protein_140 | IS1 family transposase IS1R | Transposase |
| H0272_RS24795 () | 123803..123961 | + | 159 | WP_000449408.1 | DsbA family protein | - |
| H0272_RS24800 () | 123951..124457 | + | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| H0272_RS24805 () | 124640..125455 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| H0272_RS24810 () | 125802..127688 | + | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| H0272_RS24815 () | 127729..128256 | + | 528 | WP_000178050.1 | iron transporter | - |
| H0272_RS24820 () | 128360..129739 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| H0272_RS24825 () | 129742..131025 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| H0272_RS24830 () | 131015..132145 | + | 1131 | WP_000729218.1 | ABC transporter permease | - |
| H0272_RS24835 () | 132150..132845 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| H0272_RS24840 () | 132832..133317 | + | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| H0272_RS24845 () | 133342..133827 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| H0272_RS24850 () | 133949..134582 | + | 634 | Protein_152 | histidine-type phosphatase | - |
| H0272_RS24855 () | 134732..134905 | - | 174 | Protein_153 | IS5 family transposase ISKpn26 | Transposase |
| H0272_RS24860 () | 134906..135220 | - | 315 | Protein_154 | IS5 family transposase ISKpn26 | Transposase |
| H0272_RS24865 () | 135893..136632 | - | 740 | Protein_155 | IS3 family transposase IS629 | Transposase |
| H0272_RS24870 () | 136734..136994 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| H0272_RS24875 () | 136991..137500 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| H0272_RS24880 () | 137520..137867 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| H0272_RS24885 () | 137996..138331 | + | 336 | WP_001080732.1 | colicin transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|