MGE detailed information
MGE type: Conjugative plasmid MGE length: 124445 bp
Accession: NZ_CP058950 Location: 1..124445 Organism: Escherichia coli strain SY3626C5 Replicon: plasmid pSY3626C1_124k
Accession: NZ_CP058950 Location: 1..124445 Organism: Escherichia coli strain SY3626C5 Replicon: plasmid pSY3626C1_124k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZ988_RS23905 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| HZ988_RS23910 () | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| HZ988_RS23915 () | 2124..2291 | - | 168 | WP_063078056.1 | hypothetical protein | - |
| HZ988_RS23920 () | 2406..2816 | - | 411 | Protein_3 | IS3 family transposase ISEhe3 | Transposase |
| HZ988_RS23925 () | 2879..3583 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS23930 () | 3637..4104 | + | 468 | Protein_5 | conjugal transfer protein | - |
| HZ988_RS23935 () | 4349..4465 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| HZ988_RS23940 () | 4481..6400 | + | 1920 | WP_025989258.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| HZ988_RS23945 () | 6519..6686 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| HZ988_RS23950 () | 6926..7561 | + | 636 | Protein_9 | IS256 family transposase IS406 | Transposase |
| HZ988_RS23955 () | 7826..8158 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| HZ988_RS23960 () | 8328..9119 | - | 792 | WP_001206316.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HZ988_RS23965 () | 9212..9436 | - | 225 | Protein_12 | chloramphenicol efflux MFS transporter | - |
| HZ988_RS23970 () | 9499..10203 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS23975 () | 10257..10751 | - | 495 | Protein_14 | IS4 family transposase IS10R | Transposase |
| HZ988_RS23980 () | 10894..11754 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| HZ988_RS23985 () | 11767..12309 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| HZ988_RS23990 () | 12846..13550 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS23995 () | 13603..14400 | - | 798 | Protein_18 | IS91 family transposase ISAzo26 | Transposase |
| HZ988_RS24000 () | 14549..15340 | + | 792 | WP_065800310.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HZ988_RS24005 () | 15472..16293 | + | 822 | WP_000939727.1 | hypothetical protein | ARG |
| HZ988_RS24010 () | 16446..17150 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS24015 () | 17442..17999 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HZ988_RS24020 () | 18182..19042 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HZ988_RS24025 () | 19300..20091 | - | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| HZ988_RS24030 () | 20560..20805 | - | 246 | WP_001354008.1 | GrpB family protein | - |
| HZ988_RS24035 () | 20843..21706 | - | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| HZ988_RS24040 () | 21852..22091 | - | 240 | WP_011264039.1 | macrolide transporter | - |
| HZ988_RS24045 () | 22155..22859 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS24050 () | 23010..23825 | + | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HZ988_RS24055 () | 24015..24719 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS24060 () | 24828..25169 | - | 342 | WP_072796249.1 | Late promoter-activating protein | - |
| HZ988_RS24065 () | 25187..26701 | - | 1515 | Protein_32 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| HZ988_RS24070 () | 26767..27471 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HZ988_RS24075 () | 27527..28006 | + | 480 | WP_072202717.1 | phenol hydroxylase | - |
| HZ988_RS24085 () | 29383..30198 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HZ988_RS24090 () | 30285..30527 | + | 243 | Protein_37 | phosphoglucosamine mutase | - |
| HZ988_RS24095 () | 30481..30732 | - | 252 | WP_001445143.1 | hypothetical protein | - |
| HZ988_RS24100 () | 30763..32256 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| HZ988_RS24105 () | 32368..32673 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| HZ988_RS24110 () | 32701..33915 | - | 1215 | WP_136655512.1 | Inner membrane transport protein YdhC | ARG |
| HZ988_RS24115 () | 34132..34578 | - | 447 | Protein_42 | DUF3363 domain-containing protein | - |
| HZ988_RS24120 () | 34883..35587 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS24125 () | 35651..35776 | - | 126 | Protein_44 | antitoxin | - |
| HZ988_RS24130 () | 36742..37599 | - | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| HZ988_RS24135 () | 37592..37666 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| HZ988_RS24140 () | 37898..38155 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| HZ988_RS24145 () | 38423..38629 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 38616..38677 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 38616..38677 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 38616..38677 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 38616..38677 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| HZ988_RS24150 () | 39019..39231 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| HZ988_RS24155 () | 39366..39926 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| HZ988_RS24160 () | 39981..40724 | - | 744 | WP_039002216.1 | conjugal transfer pilus acetylase TraX | - |
| HZ988_RS24165 () | 40744..46014 | - | 5271 | WP_054377139.1 | Multifunctional conjugation protein TraI | Relaxase |
| HZ988_RS24170 () | 46014..48203 | - | 2190 | WP_039002212.1 | type IV conjugative transfer system coupling protein TraD | - |
| HZ988_RS24175 () | 48456..49187 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| HZ988_RS24180 () | 49219..49722 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| HZ988_RS24185 () | 49737..52559 | - | 2823 | WP_001007048.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HZ988_RS24190 () | 52556..53929 | - | 1374 | WP_176580815.1 | conjugal transfer protein TraH | - |
| HZ988_RS24195 () | 53929..54291 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| HZ988_RS24200 () | 54221..54766 | - | 546 | WP_000052613.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HZ988_RS24205 () | 54753..55034 | - | 282 | WP_039002206.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HZ988_RS24210 () | 55150..55893 | - | 744 | WP_039002205.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HZ988_RS24215 () | 55886..56146 | - | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| HZ988_RS24220 () | 56173..57981 | - | 1809 | WP_000821844.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HZ988_RS24225 () | 57978..58616 | - | 639 | WP_000777691.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HZ988_RS24230 () | 58625..59617 | - | 993 | WP_023148235.1 | conjugal transfer pilus assembly protein TraU | - |
| HZ988_RS24235 () | 59614..60246 | - | 633 | WP_001749440.1 | type-F conjugative transfer system protein TraW | - |
| HZ988_RS24240 () | 60243..60629 | - | 387 | WP_039002198.1 | type-F conjugative transfer system protein TrbI | - |
| HZ988_RS24245 () | 60626..63253 | - | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| HZ988_RS24250 () | 63413..63634 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| HZ988_RS24255 () | 63769..64284 | - | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HZ988_RS24260 () | 64281..64649 | - | 369 | WP_077254276.1 | conjugal transfer protein TrbD | - |
| HZ988_RS24265 () | 64588..65175 | - | 588 | WP_000002772.1 | conjugal transfer protein TraP | - |
| HZ988_RS24270 () | 65165..66592 | - | 1428 | WP_000146690.1 | conjugal transfer protein TraB | - |
| HZ988_RS24275 () | 66592..67296 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HZ988_RS24280 () | 67307..67873 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HZ988_RS24285 () | 67895..68206 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HZ988_RS24290 () | 68211..68573 | - | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| HZ988_RS24295 () | 68606..69001 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HZ988_RS24300 () | 69100..69789 | - | 690 | WP_039002187.1 | conjugal transfer transcriptional regulator TraJ | - |
| HZ988_RS24305 () | 69976..70359 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| HZ988_RS24310 () | 70680..71282 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| HZ988_RS24315 () | 71579..72400 | - | 822 | WP_072795862.1 | DUF945 domain-containing protein | - |
| HZ988_RS24320 () | 72522..72809 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| HZ988_RS24325 () | 73731..73889 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 73933..74157 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73933..74157 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73933..74157 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73933..74157 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HZ988_RS24330 () | 73969..74157 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HZ988_RS24335 () | 74169..74888 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| HZ988_RS24340 () | 74885..75319 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HZ988_RS24345 () | 75374..77332 | - | 1959 | WP_039000998.1 | ParB/RepB/Spo0J family partition protein | - |
| HZ988_RS24350 () | 77397..77630 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| HZ988_RS24355 () | 77687..78226 | - | 540 | WP_032332913.1 | single-stranded DNA-binding protein | - |
| HZ988_RS24360 () | 78252..78458 | - | 207 | WP_000275853.1 | hypothetical protein | - |
| HZ988_RS24365 () | 79078..79641 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| HZ988_RS24370 () | 79689..81050 | - | 1362 | WP_038999961.1 | DUF3560 domain-containing protein | - |
| HZ988_RS24375 () | 81102..81332 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| HZ988_RS24380 () | 82367..82558 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| HZ988_RS24385 () | 82555..82977 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| HZ988_RS24390 () | 83024..83326 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| HZ988_RS24395 () | 83866..84642 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| HZ988_RS24400 () | 84693..85127 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| HZ988_RS24405 () | 85141..85362 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| HZ988_RS24410 () | 85363..86046 | - | 684 | WP_000086185.1 | DNA methylase | - |
| HZ988_RS24415 () | 86123..86427 | - | 305 | Protein_102 | hypothetical protein | - |
| HZ988_RS24420 () | 86431..87333 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| HZ988_RS24425 () | 87751..87999 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| HZ988_RS24430 () | 87996..88433 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HZ988_RS24435 () | 88433..88531 | + | 99 | Protein_106 | hypothetical protein | - |
| HZ988_RS24440 () | 88632..90161 | + | 1530 | WP_001459668.1 | tyrosine-type recombinase/integrase | - |
| HZ988_RS24445 () | 90161..92011 | + | 1851 | WP_011264068.1 | hypothetical protein | - |
| HZ988_RS24450 () | 92008..93999 | + | 1992 | WP_011264069.1 | hypothetical protein | - |
| HZ988_RS24455 () | 94001..94441 | + | 441 | WP_011264070.1 | hypothetical protein | - |
| HZ988_RS24460 () | 94697..95656 | - | 960 | WP_011264071.1 | bacteriophage abortive infection AbiH family protein | - |
| HZ988_RS24465 () | 95658..96758 | - | 1101 | WP_031619804.1 | DUF4935 domain-containing protein | - |
| HZ988_RS24470 () | 97194..98282 | + | 1089 | WP_001459672.1 | hypothetical protein | - |
| HZ988_RS24475 () | 98691..99869 | + | 1179 | Protein_114 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HZ988_RS24480 () | 99874..100266 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| HZ988_RS24485 () | 100271..101242 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| HZ988_RS24490 () | 101464..102108 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| HZ988_RS24495 () | 102102..102377 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HZ988_RS24500 () | 102529..103305 | - | 777 | Protein_119 | phage integrase family protein | - |
| HZ988_RS24505 () | 103302..103733 | - | 432 | WP_001707302.1 | hypothetical protein | - |
| HZ988_RS24510 () | 103799..104503 | + | 705 | WP_065304467.1 | IS6-like element IS26 family transposase | - |
| HZ988_RS24515 () | 104652..105977 | - | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| HZ988_RS24520 () | 106087..106784 | + | 698 | Protein_123 | IS1 family transposase IS1R | Transposase |
| HZ988_RS24525 () | 106885..107166 | - | 282 | WP_000639434.1 | hypothetical protein | - |
| HZ988_RS24530 () | 107268..108164 | - | 897 | Protein_125 | IS3 family transposase ISEhe3 | Transposase |
| HZ988_RS24535 () | 108229..109047 | + | 819 | Protein_126 | IS30 family transposase IS30D | Transposase |
| HZ988_RS24545 () | 110355..110531 | + | 177 | Protein_128 | IS30 family transposase | - |
| HZ988_RS24550 () | 110956..111240 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| HZ988_RS24555 () | 111260..112393 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| HZ988_RS24560 () | 112656..115774 | - | 3119 | Protein_131 | hypothetical protein | - |
| HZ988_RS24565 () | 116080..116310 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HZ988_RS24570 () | 116307..116723 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HZ988_RS24575 () | 116885..119023 | - | 2139 | WP_039002805.1 | AAA family ATPase | - |
| HZ988_RS24580 () | 119488..120483 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| HZ988_RS24585 () | 120487..121419 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| HZ988_RS24590 () | 121556..122253 | - | 698 | Protein_137 | IS1 family transposase IS1R | Transposase |
| HZ988_RS24595 () | 122311..122559 | + | 249 | Protein_138 | abortive infection family protein | - |
| HZ988_RS24600 () | 122848..123660 | - | 813 | WP_032333019.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|