MGE detailed information
MGE type: Prophage MGE length: 58092 bp
Accession: NZ_CP058853 Location: 1915473..1973564 Organism: Shigella flexneri strain STLEFF_38 Replicon: chromosome
Accession: NZ_CP058853 Location: 1915473..1973564 Organism: Shigella flexneri strain STLEFF_38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT29_RS09205 (1911462) | 1911462..1911509 | + | 48 | WP_211180494.1 | protein YnaN | - |
| HZT29_RS09210 (1911523) | 1911523..1912506 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HZT29_RS23530 (1912781) | 1912781..1912954 | + | 174 | WP_001296046.1 | protein YnaL | - |
| HZT29_RS09215 (1912984) | 1912984..1914357 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HZT29_RS09220 (1914486) | 1914486..1915421 | - | 936 | WP_001157377.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HZT29_RS09225 (1915473) | 1915473..1916708 | - | 1236 | WP_000040843.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HZT29_RS09230 (1916710) | 1916710..1916925 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| HZT29_RS09235 (1917102) | 1917102..1918082 | - | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| - (1918228) | 1918228..1918406 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1918228) | 1918228..1918406 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1918228) | 1918228..1918406 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1918228) | 1918228..1918406 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| HZT29_RS09240 (1918224) | 1918224..1918412 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| HZT29_RS09245 (1918405) | 1918405..1918599 | - | 195 | WP_072130784.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| HZT29_RS09250 (1918656) | 1918656..1919489 | - | 834 | WP_000166322.1 | recombination protein RecT | - |
| HZT29_RS09255 (1919482) | 1919482..1922082 | - | 2601 | WP_239637371.1 | exodeoxyribonuclease VIII | - |
| HZT29_RS09260 (1922184) | 1922184..1922459 | - | 276 | WP_000632297.1 | protein RacC | - |
| HZT29_RS09265 (1922534) | 1922534..1922704 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| HZT29_RS09270 (1922704) | 1922704..1922925 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| HZT29_RS09275 (1923367) | 1923367..1923856 | + | 490 | Protein_1810 | superinfection exclusion B family protein | - |
| HZT29_RS09280 (1923853) | 1923853..1924008 | - | 156 | WP_052318727.1 | DUF1391 family protein | - |
| HZT29_RS09285 (1924140) | 1924140..1924418 | - | 279 | WP_001406915.1 | hypothetical protein | - |
| HZT29_RS09290 (1924606) | 1924606..1925013 | - | 408 | WP_073511871.1 | helix-turn-helix domain-containing protein | - |
| HZT29_RS09295 (1925091) | 1925091..1925318 | + | 228 | WP_001406917.1 | Cro/CI family transcriptional regulator | - |
| HZT29_RS09300 (1925302) | 1925302..1925724 | + | 423 | WP_032218026.1 | toxin YdaT family protein | - |
| HZT29_RS09305 (1925803) | 1925803..1926592 | + | 790 | Protein_1816 | hypothetical protein | - |
| HZT29_RS09310 (1926599) | 1926599..1927384 | + | 786 | WP_111963060.1 | ATP-binding protein | - |
| HZT29_RS09315 (1927368) | 1927368..1928093 | + | 726 | WP_073511868.1 | DUF1627 domain-containing protein | - |
| HZT29_RS09320 (1928110) | 1928110..1928526 | + | 417 | WP_073511867.1 | DUF977 family protein | - |
| HZT29_RS09325 (1928778) | 1928778..1929758 | - | 981 | WP_000082736.1 | IS5 family transposase ISEc68 | Transposase |
| HZT29_RS09330 (1930097) | 1930097..1931614 | + | 1518 | WP_073511866.1 | hypothetical protein | - |
| HZT29_RS09335 (1931711) | 1931711..1932899 | - | 1189 | Protein_1822 | IS30 family transposase ISCfr4 | Transposase |
| HZT29_RS09340 (1933227) | 1933227..1934156 | + | 930 | WP_240765001.1 | restriction endonuclease | - |
| HZT29_RS09350 (1935385) | 1935385..1937121 | + | 1737 | WP_219397367.1 | hypothetical protein | - |
| HZT29_RS09355 (1937725) | 1937725..1937880 | + | 156 | WP_001406927.1 | type I toxin-antitoxin system toxin HokD | - |
| HZT29_RS09360 (1938126) | 1938126..1938386 | + | 261 | WP_032218041.1 | hypothetical protein | - |
| HZT29_RS09365 (1938453) | 1938453..1939052 | + | 600 | WP_001406929.1 | DUF1367 family protein | - |
| HZT29_RS09370 (1939052) | 1939052..1939342 | + | 291 | WP_029488571.1 | DUF1364 domain-containing protein | - |
| HZT29_RS09375 (1939339) | 1939339..1939881 | + | 543 | WP_001741631.1 | DUF1133 family protein | - |
| HZT29_RS09390 (1940488) | 1940488..1940799 | + | 312 | WP_001741616.1 | hypothetical protein | - |
| HZT29_RS23535 (1940898) | 1940898..1941023 | - | 126 | WP_001298832.1 | hypothetical protein | - |
| HZT29_RS09395 (1941056) | 1941056..1941271 | + | 216 | WP_000839599.1 | phage lysis protein EssD | - |
| HZT29_RS09400 (1941271) | 1941271..1941768 | + | 498 | WP_001135274.1 | lysozyme RrrD | - |
| HZT29_RS09405 (1941765) | 1941765..1942229 | + | 465 | WP_021520059.1 | lysis protein | - |
| HZT29_RS09410 (1942367) | 1942367..1943824 | + | 1458 | WP_001741602.1 | Trk system potassium transporter TrkG | - |
| HZT29_RS09415 (1943962) | 1943962..1944750 | + | 789 | WP_001291102.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HZT29_RS09420 (1944743) | 1944743..1945675 | + | 933 | WP_111963032.1 | hypothetical protein | - |
| HZT29_RS09425 (1945653) | 1945653..1945862 | + | 210 | WP_000126790.1 | hypothetical protein | - |
| HZT29_RS09430 (1945866) | 1945866..1946960 | + | 1095 | WP_053287081.1 | terminase small subunit | - |
| HZT29_RS09435 (1946941) | 1946941..1948242 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| HZT29_RS09440 (1948245) | 1948245..1949651 | + | 1407 | WP_021546823.1 | DUF4055 domain-containing protein | - |
| HZT29_RS09445 (1949635) | 1949635..1950747 | + | 1113 | WP_111963028.1 | phage minor head protein | - |
| HZT29_RS09450 (1950852) | 1950852..1951616 | + | 765 | WP_072647188.1 | hypothetical protein | - |
| HZT29_RS09455 (1951715) | 1951715..1952854 | + | 1140 | WP_096037854.1 | P22 phage major capsid protein family protein | - |
| HZT29_RS09460 (1952897) | 1952897..1953121 | + | 225 | WP_000908083.1 | hypothetical protein | - |
| HZT29_RS09465 (1953125) | 1953125..1953520 | + | 396 | WP_047632218.1 | hypothetical protein | - |
| HZT29_RS09470 (1953520) | 1953520..1953903 | + | 384 | WP_047632215.1 | hypothetical protein | - |
| HZT29_RS09475 (1953904) | 1953904..1954284 | + | 381 | WP_021564336.1 | hypothetical protein | - |
| HZT29_RS09480 (1954281) | 1954281..1954673 | + | 393 | WP_047632210.1 | phage tail terminator-like protein | - |
| HZT29_RS09485 (1954822) | 1954822..1955802 | - | 981 | WP_000082736.1 | IS5 family transposase ISEc68 | Transposase |
| HZT29_RS09490 (1955901) | 1955901..1956863 | + | 963 | WP_087898048.1 | phage tail tube protein | - |
| HZT29_RS09495 (1957014) | 1957014..1957373 | + | 360 | WP_012565075.1 | protein YdaY | - |
| HZT29_RS09500 (1957481) | 1957481..1957681 | + | 201 | WP_001755909.1 | hypothetical protein | - |
| HZT29_RS09505 (1957847) | 1957847..1961080 | + | 3234 | WP_053290123.1 | phage tail tape measure protein | - |
| HZT29_RS09510 (1961073) | 1961073..1961411 | + | 339 | WP_000024051.1 | phage tail protein | - |
| HZT29_RS09515 (1961411) | 1961411..1962109 | + | 699 | WP_062865224.1 | phage minor tail protein L | - |
| HZT29_RS09520 (1962115) | 1962115..1962858 | + | 744 | WP_001517848.1 | C40 family peptidase | - |
| HZT29_RS09525 (1962855) | 1962855..1963427 | + | 573 | WP_001517847.1 | tail assembly protein | - |
| HZT29_RS09530 (1963488) | 1963488..1966967 | + | 3480 | WP_240765003.1 | host specificity protein J | - |
| HZT29_RS09535 (1967035) | 1967035..1967634 | + | 600 | WP_001233123.1 | hypothetical protein | VF |
| HZT29_RS09540 (1967699) | 1967699..1971457 | + | 3759 | WP_111963016.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HZT29_RS09545 (1971494) | 1971494..1971640 | + | 147 | Protein_1863 | tail fiber assembly protein | - |
| HZT29_RS09550 (1971853) | 1971853..1972710 | - | 858 | WP_102804532.1 | hypothetical protein | ARG |
| HZT29_RS09555 (1972707) | 1972707..1973564 | - | 858 | WP_001101728.1 | hypothetical protein | ARG |
| HZT29_RS09560 (1973561) | 1973561..1974388 | - | 828 | WP_000983703.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| HZT29_RS09565 (1974388) | 1974388..1975302 | - | 915 | WP_000286867.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| HZT29_RS09570 (1975888) | 1975888..1976322 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HZT29_RS09575 (1976462) | 1976462..1977595 | - | 1134 | WP_000837924.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|