MGE detailed information
MGE type: Prophage MGE length: 25226 bp
Accession: NZ_CP058839 Location: 4054154..4079379 Organism: Shigella flexneri strain STLEFF_34 Replicon: chromosome
Accession: NZ_CP058839 Location: 4054154..4079379 Organism: Shigella flexneri strain STLEFF_34 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT26_RS19715 (4053354) | 4053354..4054157 | + | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| HZT26_RS19720 (4054154) | 4054154..4055068 | - | 915 | WP_000648572.1 | DNA-binding transcriptional regulator YafC | - |
| HZT26_RS19725 (4055309) | 4055309..4056109 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HZT26_RS19730 (4056140) | 4056140..4056736 | + | 597 | Protein_3858 | methyltransferase domain-containing protein | - |
| HZT26_RS19735 (4056784) | 4056784..4058142 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| HZT26_RS19740 (4058214) | 4058214..4058969 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| HZT26_RS19745 (4059003) | 4059003..4059725 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| HZT26_RS19750 (4059722) | 4059722..4060189 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| HZT26_RS19755 (4060254) | 4060254..4060985 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| HZT26_RS19765 (4061522) | 4061522..4061677 | + | 156 | Protein_3864 | hypothetical protein | - |
| HZT26_RS19775 (4062444) | 4062444..4063313 | - | 870 | Protein_3866 | type VI secretion system contractile sheath large subunit | - |
| HZT26_RS19780 (4063364) | 4063364..4063588 | - | 225 | WP_000123970.1 | hypothetical protein | - |
| HZT26_RS19785 (4063623) | 4063623..4064123 | - | 501 | WP_000037397.1 | type VI secretion system contractile sheath small subunit | - |
| HZT26_RS19790 (4064818) | 4064818..4065336 | + | 519 | WP_001142958.1 | Hcp family type VI secretion system effector | - |
| HZT26_RS24755 (4065546) | 4065546..4067561 | + | 2016 | Protein_3870 | type VI secretion system tip protein VgrG | - |
| HZT26_RS24760 (4067880) | 4067880..4068686 | + | 807 | WP_244573022.1 | RHS repeat-associated core domain-containing protein | - |
| HZT26_RS19800 (4068664) | 4068664..4069056 | + | 393 | WP_001101839.1 | hypothetical protein | - |
| HZT26_RS19805 (4069487) | 4069487..4070623 | + | 1137 | WP_000420818.1 | ISAs1 family transposase | - |
| HZT26_RS19810 (4070664) | 4070664..4071434 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HZT26_RS19815 (4071615) | 4071615..4072061 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HZT26_RS19820 (4072104) | 4072104..4074548 | - | 2445 | WP_000973083.1 | acyl-CoA dehydrogenase FadE | - |
| HZT26_RS19825 (4074788) | 4074788..4075366 | + | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| HZT26_RS19830 (4075572) | 4075572..4076339 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| HZT26_RS19835 (4076310) | 4076310..4077050 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| HZT26_RS19840 (4077206) | 4077206..4077484 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HZT26_RS19845 (4077487) | 4077487..4077747 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HZT26_RS19850 (4077957) | 4077957..4078706 | + | 750 | WP_000056849.1 | C40 family peptidase | - |
| HZT26_RS19855 (4078882) | 4078882..4079379 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| HZT26_RS19860 (4079603) | 4079603..4081315 | - | 1713 | Protein_3884 | flagellar biosynthesis protein FlhA | - |
| HZT26_RS19865 (4081287) | 4081287..4082072 | + | 786 | WP_000207552.1 | putative lateral flagellar export/assembly protein LafU | - |
| HZT26_RS19870 (4082143) | 4082143..4083198 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HZT26_RS19875 (4083250) | 4083250..4083543 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | - |
| HZT26_RS19880 (4083546) | 4083546..4083944 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|