MGE detailed information
MGE type: Prophage MGE length: 53698 bp
Accession: NZ_CP058828 Location: 2265950..2319647 Organism: Shigella flexneri strain STLE3 Replicon: chromosome
Accession: NZ_CP058828 Location: 2265950..2319647 Organism: Shigella flexneri strain STLE3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT20_RS10790 (2263325) | 2263325..2265751 | - | 2427 | WP_000041674.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| HZT20_RS10795 (2265950) | 2265950..2266255 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| HZT20_RS10800 (2266363) | 2266363..2267073 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| HZT20_RS10805 (2267076) | 2267076..2267636 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HZT20_RS10810 (2267671) | 2267671..2268012 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HZT20_RS10815 (2268147) | 2268147..2268473 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| HZT20_RS10820 (2268679) | 2268679..2269893 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HZT20_RS10825 (2269905) | 2269905..2270924 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HZT20_RS10830 (2271112) | 2271112..2272392 | - | 1281 | WP_000876986.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HZT20_RS10835 (2272427) | 2272427..2272678 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| HZT20_RS10840 (2272751) | 2272751..2275222 | - | 2472 | WP_021511903.1 | exonuclease | - |
| HZT20_RS10845 (2275316) | 2275316..2275507 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| HZT20_RS10850 (2275504) | 2275504..2275692 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HZT20_RS10855 (2276260) | 2276260..2276478 | - | 219 | WP_001171925.1 | protein YdfC | - |
| HZT20_RS23985 (2276508) | 2276508..2276636 | - | 129 | WP_000344964.1 | protein YdfB | - |
| HZT20_RS10860 (2276638) | 2276638..2276793 | - | 156 | WP_000379578.1 | DUF1391 family protein | - |
| HZT20_RS10865 (2276962) | 2276962..2277369 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| HZT20_RS10870 (2277450) | 2277450..2277677 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| HZT20_RS10875 (2277661) | 2277661..2278182 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| HZT20_RS10880 (2278163) | 2278163..2279128 | + | 966 | WP_061350717.1 | hypothetical protein | - |
| HZT20_RS10885 (2279169) | 2279169..2279591 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| HZT20_RS10890 (2279588) | 2279588..2280077 | + | 490 | Protein_2139 | class I SAM-dependent methyltransferase | - |
| HZT20_RS10895 (2280555) | 2280555..2280976 | + | 422 | Protein_2140 | hypothetical protein | - |
| HZT20_RS10900 (2281611) | 2281611..2282952 | + | 1342 | Protein_2141 | ISNCY family transposase ISCARN112 | Transposase |
| HZT20_RS10905 (2283389) | 2283389..2283721 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| HZT20_RS10910 (2283924) | 2283924..2284229 | - | 306 | WP_001326990.1 | protein YdfV | - |
| HZT20_RS10915 (2284254) | 2284254..2284493 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HZT20_RS10920 (2284493) | 2284493..2284780 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HZT20_RS10925 (2284852) | 2284852..2285007 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HZT20_RS10930 (2285224) | 2285224..2285475 | + | 252 | WP_000980994.1 | protein Rem | - |
| HZT20_RS10935 (2285542) | 2285542..2285820 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| HZT20_RS10940 (2285822) | 2285822..2286871 | + | 1050 | WP_061350716.1 | DUF968 domain-containing protein | - |
| HZT20_RS10945 (2286885) | 2286885..2287637 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HZT20_RS10950 (2287915) | 2287915..2288004 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HZT20_RS10955 (2288059) | 2288059..2288271 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HZT20_RS10960 (2288572) | 2288572..2288787 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HZT20_RS10965 (2289151) | 2289151..2289321 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| HZT20_RS10970 (2289541) | 2289541..2289756 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HZT20_RS10975 (2289761) | 2289761..2290072 | + | 312 | WP_000189918.1 | DUF1327 domain-containing protein | - |
| HZT20_RS10980 (2290069) | 2290069..2290602 | + | 534 | WP_001092971.1 | lysozyme | - |
| HZT20_RS10985 (2290599) | 2290599..2291096 | + | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| HZT20_RS10990 (2291460) | 2291460..2291672 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HZT20_RS10995 (2291683) | 2291683..2291871 | + | 189 | WP_071526745.1 | cold-shock protein | - |
| HZT20_RS11000 (2291874) | 2291874..2291912 | + | 39 | Protein_2161 | hypothetical protein | - |
| HZT20_RS11005 (2291944) | 2291944..2292174 | + | 231 | WP_000720960.1 | protein YnfN | - |
| HZT20_RS11010 (2292347) | 2292347..2292520 | + | 174 | WP_001019207.1 | addiction module toxin, GnsA/GnsB family | - |
| HZT20_RS11015 (2292816) | 2292816..2293022 | + | 207 | WP_000548593.1 | hypothetical protein | - |
| HZT20_RS11020 (2293585) | 2293585..2294112 | + | 528 | WP_001595800.1 | DUF1441 family protein | - |
| HZT20_RS11025 (2294121) | 2294121..2296220 | + | 2100 | WP_023277784.1 | phage terminase large subunit family protein | - |
| HZT20_RS11030 (2296217) | 2296217..2296429 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| HZT20_RS11035 (2296429) | 2296429..2297937 | + | 1509 | WP_000985929.1 | phage portal protein | - |
| HZT20_RS11040 (2297882) | 2297882..2299909 | + | 2028 | WP_023277783.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| HZT20_RS11045 (2299996) | 2299996..2300319 | + | 324 | WP_023140705.1 | DUF2190 family protein | - |
| HZT20_RS11050 (2300312) | 2300312..2300587 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| HZT20_RS11055 (2300599) | 2300599..2301177 | + | 579 | WP_023140704.1 | phage tail protein | - |
| HZT20_RS11060 (2301174) | 2301174..2301575 | + | 402 | WP_001079419.1 | phage minor tail U family protein | - |
| HZT20_RS11065 (2301586) | 2301586..2302329 | + | 744 | WP_021560209.1 | phage tail protein | - |
| HZT20_RS11070 (2302390) | 2302390..2302776 | + | 387 | WP_001300035.1 | phage minor tail protein G | - |
| HZT20_RS11075 (2302785) | 2302785..2303114 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| HZT20_RS11080 (2303086) | 2303086..2306151 | + | 3066 | WP_195714520.1 | phage tail tape measure protein | - |
| HZT20_RS11085 (2306151) | 2306151..2306480 | + | 330 | WP_000447248.1 | phage tail protein | - |
| HZT20_RS11090 (2306490) | 2306490..2307188 | + | 699 | WP_061348596.1 | phage minor tail protein L | - |
| HZT20_RS11095 (2307194) | 2307194..2307937 | + | 744 | WP_000140751.1 | C40 family peptidase | - |
| HZT20_RS11100 (2307874) | 2307874..2308482 | + | 609 | WP_000090940.1 | tail assembly protein | - |
| HZT20_RS11105 (2308542) | 2308542..2311955 | + | 3414 | WP_240768237.1 | host specificity protein J | - |
| HZT20_RS11110 (2312026) | 2312026..2312625 | + | 600 | WP_061348595.1 | hypothetical protein | VF |
| HZT20_RS11115 (2312690) | 2312690..2315764 | + | 3075 | WP_072305171.1 | phage tail protein | - |
| HZT20_RS11120 (2315764) | 2315764..2316339 | + | 576 | WP_000885584.1 | tail fiber assembly protein | - |
| HZT20_RS11125 (2316437) | 2316437..2317027 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HZT20_RS11130 (2317345) | 2317345..2317578 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HZT20_RS11135 (2317647) | 2317647..2317760 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| HZT20_RS11140 (2318364) | 2318364..2319647 | + | 1284 | Protein_2189 | MHS family MFS transporter YdfJ | - |
| HZT20_RS11145 (2319736) | 2319736..2321196 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| HZT20_RS11150 (2321231) | 2321231..2321434 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HZT20_RS11155 (2321611) | 2321611..2322297 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| HZT20_RS11160 (2322386) | 2322386..2323132 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|