MGE detailed information
MGE type: Conjugative plasmid MGE length: 85618 bp
Accession: NZ_CP058788 Location: 1..85618 Organism: Shigella flexneri strain STLIN_4 Replicon: plasmid unnamed2
Accession: NZ_CP058788 Location: 1..85618 Organism: Shigella flexneri strain STLIN_4 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT07_RS23560 (1) | 1..858 | + | 858 | WP_000131009.1 | incFII family plasmid replication initiator RepA | - |
| HZT07_RS23565 (1823) | 1823..2074 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HZT07_RS23570 (2071) | 2071..2358 | + | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HZT07_RS23580 (3866) | 3866..5079 | + | 1214 | WP_165369977.1 | IS3 family transposase IS1203 | Transposase |
| HZT07_RS23585 (5088) | 5088..5291 | + | 204 | Protein_5 | helix-turn-helix transcriptional regulator | - |
| HZT07_RS23590 (5262) | 5262..5456 | - | 195 | Protein_6 | IS91 family transposase | - |
| HZT07_RS23595 (5624) | 5624..9757 | + | 4134 | WP_063085579.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| HZT07_RS23600 (9866) | 9866..10257 | + | 392 | Protein_8 | peptide deformylase | - |
| HZT07_RS23605 (10304) | 10304..10570 | - | 267 | Protein_9 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HZT07_RS23610 (10610) | 10610..11697 | - | 1088 | Protein_10 | IS66 family transposase ISEc8 | Transposase |
| HZT07_RS23615 (11732) | 11732..12301 | - | 570 | WP_237454357.1 | Tn3 family transposase TnpA_ISAzs29 | Transposase |
| HZT07_RS23620 (12411) | 12411..13115 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HZT07_RS23625 (13178) | 13178..13461 | - | 284 | Protein_13 | IS1 family transposase IS1R | Transposase |
| HZT07_RS23630 (13790) | 13790..16495 | + | 2706 | WP_240763467.1 | HTH-type transcriptional regulator MalT | VF |
| HZT07_RS23635 (16538) | 16538..16891 | - | 354 | Protein_15 | RNA 3'-terminal phosphate cyclase | - |
| HZT07_RS23640 (17299) | 17299..18243 | - | 945 | Protein_16 | IS110 family transposase IS5708 | Transposase |
| HZT07_RS23645 (18311) | 18311..19015 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HZT07_RS23650 (19284) | 19284..23360 | - | 4077 | WP_063121986.1 | Serine protease SepA autotransporter | VF |
| HZT07_RS23655 (23556) | 23556..24718 | + | 1163 | Protein_19 | IS3 family transposase ISEhe3 | Transposase |
| HZT07_RS23660 (25017) | 25017..25307 | + | 291 | WP_000990619.1 | hypothetical protein | - |
| HZT07_RS23665 (25816) | 25816..26949 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| HZT07_RS23670 (26969) | 26969..27253 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| HZT07_RS23675 (27250) | 27250..27447 | - | 198 | WP_000215657.1 | hypothetical protein | - |
| HZT07_RS23680 (28035) | 28035..28325 | + | 291 | WP_021570624.1 | hypothetical protein | - |
| HZT07_RS23685 (28483) | 28483..29091 | + | 609 | WP_001375052.1 | hypothetical protein | - |
| HZT07_RS23690 (29159) | 29159..29941 | + | 783 | WP_011251351.1 | site-specific integrase | - |
| HZT07_RS23695 (30079) | 30079..30354 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| HZT07_RS23700 (30348) | 30348..30992 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| HZT07_RS23705 (31221) | 31221..32192 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| HZT07_RS23710 (32197) | 32197..32589 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| HZT07_RS23715 (32594) | 32594..33865 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| HZT07_RS23720 (33865) | 33865..34302 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HZT07_RS23725 (34299) | 34299..34547 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HZT07_RS23730 (34965) | 34965..35867 | + | 903 | WP_001302618.1 | DUF1281 domain-containing protein | - |
| HZT07_RS23735 (35864) | 35864..36175 | + | 312 | WP_032317461.1 | hypothetical protein | - |
| HZT07_RS23740 (36252) | 36252..36935 | + | 684 | WP_063072991.1 | DNA methylase | - |
| HZT07_RS23745 (36936) | 36936..37157 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| HZT07_RS23750 (37138) | 37138..37605 | + | 468 | WP_023156300.1 | DUF1380 family protein | - |
| HZT07_RS23755 (37650) | 37650..38420 | + | 771 | WP_001006212.1 | hypothetical protein | - |
| HZT07_RS23760 (38833) | 38833..39258 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| HZT07_RS23765 (39305) | 39305..39727 | + | 423 | WP_000271684.1 | DUF1380 family protein | - |
| HZT07_RS23770 (39724) | 39724..39915 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HZT07_RS23775 (40953) | 40953..41183 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| HZT07_RS23780 (41235) | 41235..42596 | + | 1362 | WP_000170715.1 | DUF3560 domain-containing protein | - |
| HZT07_RS23785 (42644) | 42644..43207 | + | 564 | WP_112914032.1 | class I SAM-dependent methyltransferase | - |
| HZT07_RS23790 (43207) | 43207..43419 | + | 213 | WP_074154109.1 | hypothetical protein | - |
| HZT07_RS23795 (43359) | 43359..43589 | + | 231 | WP_001380705.1 | hypothetical protein | - |
| HZT07_RS23800 (43830) | 43830..44036 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| HZT07_RS23805 (44062) | 44062..44514 | + | 453 | WP_000290842.1 | single-stranded DNA-binding protein | - |
| HZT07_RS23810 (44576) | 44576..44809 | + | 234 | WP_063085740.1 | DUF905 family protein | - |
| HZT07_RS23815 (44874) | 44874..46832 | + | 1959 | WP_063072993.1 | ParB/RepB/Spo0J family partition protein | - |
| HZT07_RS23820 (46887) | 46887..47321 | + | 435 | WP_000845907.1 | conjugation system SOS inhibitor PsiB | - |
| HZT07_RS23825 (47318) | 47318..48037 | + | 720 | WP_001276240.1 | plasmid SOS inhibition protein A | - |
| HZT07_RS23830 (48049) | 48049..48237 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - (48049) | 48049..48273 | + | 225 | NuclAT_0 | - | - |
| - (48049) | 48049..48273 | + | 225 | NuclAT_0 | - | - |
| - (48049) | 48049..48273 | + | 225 | NuclAT_0 | - | - |
| - (48049) | 48049..48273 | + | 225 | NuclAT_0 | - | - |
| HZT07_RS23835 (48259) | 48259..48408 | + | 150 | Protein_55 | plasmid maintenance protein Mok | - |
| HZT07_RS23840 (48350) | 48350..48475 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HZT07_RS23845 (48695) | 48695..48925 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| HZT07_RS23850 (48923) | 48923..49096 | - | 174 | Protein_58 | hypothetical protein | - |
| HZT07_RS23855 (49166) | 49166..49372 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| HZT07_RS23860 (49397) | 49397..49684 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| HZT07_RS23865 (49803) | 49803..50624 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| HZT07_RS23870 (50921) | 50921..51523 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| HZT07_RS23875 (51844) | 51844..52227 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| HZT07_RS23880 (52414) | 52414..53103 | + | 690 | WP_047402313.1 | conjugal transfer transcriptional regulator TraJ | - |
| HZT07_RS23885 (53196) | 53196..53597 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| HZT07_RS23890 (53630) | 53630..53992 | + | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| HZT07_RS23895 (53997) | 53997..54308 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HZT07_RS23900 (54330) | 54330..54896 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HZT07_RS23905 (54883) | 54883..55611 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| HZT07_RS23910 (55611) | 55611..57038 | + | 1428 | WP_047402310.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HZT07_RS23915 (57028) | 57028..57615 | + | 588 | WP_000002772.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| HZT07_RS23920 (57602) | 57602..57922 | + | 321 | WP_001057283.1 | conjugal transfer protein TrbD | - |
| HZT07_RS23925 (57919) | 57919..58434 | + | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HZT07_RS23930 (58569) | 58569..58790 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| HZT07_RS23935 (58950) | 58950..61577 | + | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| HZT07_RS23940 (61574) | 61574..61960 | + | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| HZT07_RS23945 (61957) | 61957..62589 | + | 633 | WP_042047196.1 | type-F conjugative transfer system protein TraW | - |
| HZT07_RS23950 (62586) | 62586..63578 | + | 993 | WP_042047198.1 | conjugal transfer pilus assembly protein TraU | - |
| HZT07_RS23955 (63587) | 63587..64225 | + | 639 | WP_042047200.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HZT07_RS23960 (64222) | 64222..66030 | + | 1809 | WP_047402305.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HZT07_RS23965 (66057) | 66057..66314 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| HZT07_RS23970 (66307) | 66307..67050 | + | 744 | WP_162708429.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HZT07_RS23975 (67211) | 67211..67447 | + | 237 | WP_001346259.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HZT07_RS23980 (67434) | 67434..67979 | + | 546 | WP_000052613.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HZT07_RS23985 (67909) | 67909..68271 | + | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| HZT07_RS23990 (68271) | 68271..69644 | + | 1374 | WP_170926237.1 | conjugal transfer pilus assembly protein TraH | - |
| HZT07_RS23995 (69641) | 69641..72463 | + | 2823 | WP_112914026.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| HZT07_RS24000 (72478) | 72478..72981 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| HZT07_RS24005 (73013) | 73013..73744 | + | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| HZT07_RS24010 (73997) | 73997..76240 | + | 2244 | WP_112930044.1 | type IV conjugative transfer system coupling protein TraD | - |
| HZT07_RS24015 (76240) | 76240..81510 | + | 5271 | WP_063085751.1 | Multifunctional conjugation protein TraI | Relaxase |
| HZT07_RS24020 (81530) | 81530..82273 | + | 744 | WP_000205704.1 | conjugal transfer pilus acetylase TraX | - |
| HZT07_RS24025 (82328) | 82328..82888 | + | 561 | WP_024184455.1 | fertility inhibition protein FinO | - |
| HZT07_RS24030 (83024) | 83024..83236 | + | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| HZT07_RS24035 (83482) | 83482..83943 | + | 462 | WP_000978818.1 | thermonuclease family protein | - |
| HZT07_RS24040 (83989) | 83989..84198 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| HZT07_RS24045 (84237) | 84237..84827 | + | 591 | WP_000766816.1 | DUF2726 domain-containing protein | - |
| HZT07_RS24050 (85067) | 85067..85327 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| HZT07_RS24055 (85421) | 85421..85606 | + | 186 | Protein_99 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|