MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 112655 bp
Accession: NZ_CP058349 Location: 514362..627016 Organism: Pseudomonas sp. ABC1 Replicon: chromosome
Accession: NZ_CP058349 Location: 514362..627016 Organism: Pseudomonas sp. ABC1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW090_RS02025 () | 511451..512203 | - | 753 | WP_179114793.1 | SDR family oxidoreductase | - |
| HW090_RS02030 () | 512403..512816 | + | 414 | WP_179111910.1 | helix-turn-helix transcriptional regulator | - |
| HW090_RS02035 () | 512884..513759 | - | 876 | WP_179111911.1 | hypothetical protein | - |
| HW090_RS02040 () | 513844..514053 | + | 210 | WP_179111912.1 | hypothetical protein | - |
| HW090_RS02045 () | 514588..515385 | + | 798 | WP_179111913.1 | hypothetical protein | - |
| HW090_RS02050 () | 515967..516710 | + | 744 | WP_179111914.1 | hypothetical protein | - |
| HW090_RS02055 () | 516832..517068 | + | 237 | WP_179111915.1 | AlpA family transcriptional regulator | - |
| HW090_RS02060 () | 517080..517955 | + | 876 | WP_179111916.1 | Sporulation initiation inhibitor protein Soj | VF |
| HW090_RS02065 () | 517939..518181 | + | 243 | WP_179111917.1 | type II toxin-antitoxin system HicA family toxin | - |
| HW090_RS02070 () | 518174..519817 | + | 1644 | WP_179111918.1 | ParB family protein | - |
| HW090_RS02075 () | 519833..520393 | + | 561 | WP_179111919.1 | DUF2857 domain-containing protein | - |
| HW090_RS02080 () | 520397..521632 | + | 1236 | WP_179111920.1 | hypothetical protein | - |
| HW090_RS02085 () | 521719..522918 | - | 1200 | WP_179111921.1 | phospholipase D family protein | - |
| HW090_RS02090 () | 523140..523919 | + | 780 | WP_179111922.1 | TIGR03761 family integrating conjugative element protein | - |
| HW090_RS02095 () | 523916..524455 | + | 540 | WP_179111923.1 | DUF3158 family protein | - |
| HW090_RS02100 () | 524594..525034 | + | 441 | WP_179111924.1 | single-stranded DNA-binding protein | - |
| HW090_RS02105 () | 525219..525998 | + | 780 | WP_179111925.1 | hypothetical protein | - |
| HW090_RS02110 () | 526143..528160 | + | 2018 | Protein_418 | DNA topoisomerase III | - |
| HW090_RS02115 () | 529064..530137 | + | 1074 | WP_179111926.1 | site-specific DNA-methyltransferase | - |
| HW090_RS02120 () | 530103..531020 | - | 918 | WP_179111927.1 | hypothetical protein | - |
| HW090_RS02125 () | 531243..531395 | - | 153 | Protein_421 | IS3 family transposase ISAzsp1 | Transposase |
| HW090_RS02130 () | 531672..531884 | + | 213 | WP_179111928.1 | hypothetical protein | - |
| HW090_RS02135 () | 531906..532298 | + | 393 | WP_179111929.1 | hypothetical protein | - |
| HW090_RS02140 () | 532398..532862 | + | 465 | WP_179111930.1 | hypothetical protein | - |
| HW090_RS02145 () | 532974..533663 | + | 690 | WP_179111931.1 | hypothetical protein | - |
| HW090_RS02150 () | 533742..534485 | + | 744 | WP_179111932.1 | ABC transporter substrate-binding protein | - |
| HW090_RS02155 () | 534581..534859 | + | 279 | WP_179111933.1 | uridylate kinase | - |
| HW090_RS02160 () | 535150..535962 | + | 813 | WP_179111934.1 | GTPase | - |
| HW090_RS02165 () | 536402..537343 | + | 942 | WP_179111935.1 | DUF3577 domain-containing protein | - |
| HW090_RS02170 () | 537400..538089 | + | 690 | WP_179111936.1 | DUF3275 family protein | - |
| HW090_RS02175 () | 538182..538505 | + | 324 | WP_179111937.1 | hypothetical protein | - |
| HW090_RS02180 () | 538606..538947 | + | 342 | WP_179111938.1 | hypothetical protein | - |
| HW090_RS02185 () | 539061..539711 | + | 651 | WP_179111939.1 | hypothetical protein | - |
| HW090_RS02190 () | 539776..540885 | + | 1110 | WP_179111940.1 | class I SAM-dependent methyltransferase | - |
| HW090_RS02195 () | 540932..541258 | + | 327 | WP_179111941.1 | methyltransferase | - |
| HW090_RS02200 () | 541336..541634 | + | 299 | Protein_436 | hypothetical protein | - |
| HW090_RS02205 () | 541746..544028 | + | 2283 | WP_179111942.1 | DEAD/DEAH box helicase | - |
| HW090_RS02210 () | 544155..544934 | + | 780 | WP_179111943.1 | hypothetical protein | - |
| HW090_RS02215 () | 544983..546797 | - | 1815 | WP_179111944.1 | ATP-dependent helicase | - |
| HW090_RS02220 () | 546784..548571 | - | 1788 | WP_179111945.1 | AAA family ATPase | - |
| HW090_RS02225 () | 548794..549393 | + | 600 | WP_179111946.1 | hypothetical protein | VF |
| HW090_RS02230 () | 549390..550034 | + | 645 | WP_179111947.1 | hypothetical protein | - |
| HW090_RS02235 () | 550049..550774 | + | 726 | WP_179111948.1 | TIGR03759 family integrating conjugative element protein | - |
| HW090_RS02240 () | 550756..551346 | + | 591 | WP_179111949.1 | hypothetical protein | VF |
| HW090_RS02245 () | 551343..551891 | + | 549 | WP_179111950.1 | integrating conjugative element protein | - |
| HW090_RS02250 () | 551896..554076 | + | 2181 | WP_179111951.1 | type IV conjugative transfer system coupling protein TraD | - |
| HW090_RS02255 () | 554073..554822 | + | 750 | WP_179111952.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HW090_RS02260 () | 554806..556560 | - | 1755 | WP_179111953.1 | ATP-binding protein | - |
| HW090_RS02265 () | 556720..557094 | + | 375 | WP_179111954.1 | RAQPRD family integrative conjugative element protein | - |
| HW090_RS02270 () | 557091..557324 | + | 234 | WP_179111955.1 | TIGR03758 family integrating conjugative element protein | - |
| HW090_RS02275 () | 557338..557694 | + | 357 | WP_179111956.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HW090_RS02280 () | 557707..558105 | + | 399 | WP_179111957.1 | TIGR03750 family conjugal transfer protein | - |
| HW090_RS02285 () | 558102..558791 | + | 690 | WP_179111958.1 | TIGR03746 family integrating conjugative element protein | - |
| HW090_RS02290 () | 558788..559711 | + | 924 | WP_179111959.1 | TIGR03749 family integrating conjugative element protein | - |
| HW090_RS02295 () | 559701..561128 | + | 1428 | WP_179111960.1 | TIGR03752 family integrating conjugative element protein | - |
| HW090_RS02300 () | 561109..561555 | + | 447 | WP_179111961.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HW090_RS02305 () | 561555..564440 | + | 2886 | WP_179111962.1 | conjugative transfer ATPase | - |
| HW090_RS02310 () | 564454..565239 | + | 786 | WP_179111963.1 | thioredoxin domain-containing protein | - |
| HW090_RS02315 () | 565406..565900 | + | 495 | WP_179114794.1 | DNA repair protein RadC | - |
| HW090_RS02320 () | 566138..566746 | + | 609 | WP_179111964.1 | hypothetical protein | - |
| HW090_RS02325 () | 566800..567090 | + | 291 | WP_134587219.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HW090_RS02330 () | 567090..567581 | + | 492 | WP_179111965.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HW090_RS02335 () | 567689..568105 | + | 417 | WP_179111966.1 | TIGR03757 family integrating conjugative element protein | - |
| HW090_RS02340 () | 568102..569052 | + | 951 | WP_179111967.1 | TIGR03756 family integrating conjugative element protein | - |
| HW090_RS02345 () | 569063..570457 | + | 1395 | WP_179111968.1 | integrating conjugative element protein | - |
| HW090_RS02350 () | 570454..570822 | + | 369 | WP_179111969.1 | hypothetical protein | - |
| HW090_RS02355 () | 570836..572353 | + | 1518 | WP_179111970.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HW090_RS02360 () | 572369..572728 | - | 360 | WP_179111971.1 | DUF3742 family protein | - |
| HW090_RS02365 () | 572756..573214 | - | 459 | WP_179111972.1 | type II toxin-antitoxin system YhaV family toxin | - |
| HW090_RS02370 () | 573214..573531 | - | 318 | WP_179111973.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| HW090_RS02375 () | 573882..574421 | - | 540 | WP_179111974.1 | hypothetical protein | - |
| HW090_RS02380 () | 574753..575016 | - | 264 | WP_179111975.1 | hypothetical protein | - |
| HW090_RS02385 () | 575437..577281 | + | 1845 | WP_179111976.1 | TraI domain-containing protein | - |
| HW090_RS02390 () | 577290..578039 | - | 750 | WP_179111977.1 | hypothetical protein | - |
| HW090_RS02395 () | 578102..578995 | - | 894 | WP_179111978.1 | pyridoxal-phosphate dependent enzyme | - |
| HW090_RS02400 () | 579005..580204 | - | 1200 | WP_179111979.1 | MFS transporter | - |
| HW090_RS02405 () | 580206..580982 | - | 777 | WP_179111980.1 | alanyl-tRNA editing protein | - |
| HW090_RS02410 () | 580984..581577 | - | 594 | WP_179114795.1 | serine O-acetyltransferase | - |
| HW090_RS02415 () | 581832..583184 | + | 1353 | WP_179111981.1 | PLP-dependent aminotransferase family protein | - |
| HW090_RS02420 () | 583218..584444 | - | 1227 | WP_179111982.1 | MFS transporter | - |
| HW090_RS02425 () | 584507..586552 | - | 2046 | WP_179114796.1 | Pesticin receptor | VF |
| HW090_RS02430 () | 586619..588430 | - | 1812 | WP_179111983.1 | Iron import ATP-binding/permease protein IrtB | VF |
| HW090_RS02435 () | 588427..590196 | - | 1770 | WP_179111984.1 | Iron import ATP-binding/permease protein IrtA | VF |
| HW090_RS02440 () | 590193..591455 | - | 1263 | WP_179111985.1 | Protein AmpG | VF |
| HW090_RS02445 () | 591751..592656 | + | 906 | WP_179111986.1 | Regulatory protein PchR | VF |
| HW090_RS02450 () | 593020..595917 | + | 2898 | WP_179111987.1 | TonB-dependent receptor | - |
| HW090_RS02455 () | 595996..596826 | + | 831 | WP_179111988.1 | hypothetical protein | - |
| HW090_RS02460 () | 597072..598874 | + | 1803 | WP_179111989.1 | type I secretion system permease/ATPase | - |
| HW090_RS02465 () | 598889..600232 | + | 1344 | WP_179114797.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| HW090_RS02470 () | 600361..601707 | + | 1347 | WP_179111990.1 | TolC family outer membrane protein | - |
| HW090_RS02475 () | 601750..602202 | + | 453 | WP_179111991.1 | hypothetical protein | - |
| HW090_RS02480 () | 602297..608527 | + | 6231 | WP_179111992.1 | Anguibactin system regulator | VF |
| HW090_RS02485 () | 608524..618222 | + | 9699 | WP_179111993.1 | Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE | VF |
| HW090_RS02490 () | 618219..619352 | + | 1134 | WP_179111994.1 | hypothetical protein | VF |
| HW090_RS02495 () | 619345..620130 | + | 786 | WP_179111995.1 | Thioesterase PikA5 | VF |
| HW090_RS02500 () | 620143..623079 | + | 2937 | WP_179111996.1 | 2,3-dihydroxybenzoate-AMP ligase | VF |
| HW090_RS02505 () | 623266..623832 | + | 567 | WP_179111997.1 | hypothetical protein | VF |
| HW090_RS02510 () | 623889..624797 | + | 909 | WP_179111998.1 | LysR family transcriptional regulator | - |
| HW090_RS02515 () | 624813..626774 | - | 1962 | WP_179111999.1 | Prophage integrase IntS ; Integrase | Integrase |
| HW090_RS02525 () | 627145..627702 | - | 558 | WP_179112000.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| HW090_RS02530 () | 627736..629559 | - | 1824 | WP_179114798.1 | excinuclease ABC subunit UvrC | - |
| HW090_RS02535 () | 629556..630200 | - | 645 | WP_179112001.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|