MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 85980 bp
Accession: NZ_CP058281 Location: 1560752..1646731 Organism: Helicobacter pylori strain Hk711 Replicon: chromosome
Accession: NZ_CP058281 Location: 1560752..1646731 Organism: Helicobacter pylori strain Hk711 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWU15_RS07425 | 1556085..1557950 | - | 1866 | WP_237015428.1 | ATP-dependent DNA helicase RecG | - |
| HWU15_RS07430 | 1558032..1558379 | + | 348 | WP_237015429.1 | hypothetical protein | - |
| HWU15_RS07435 | 1558383..1559018 | + | 636 | WP_000668020.1 | outer membrane protein | - |
| HWU15_RS07440 | 1559015..1559767 | - | 753 | WP_237015430.1 | exodeoxyribonuclease III | - |
| HWU15_RS07450 | 1559945..1561378 | - | 1434 | WP_237015431.1 | competence protein | - |
| HWU15_RS07455 | 1561599..1562966 | - | 1368 | WP_237015432.1 | chromosomal replication initiator protein DnaA | - |
| HWU15_RS07460 | 1563120..1563656 | + | 537 | WP_000922947.1 | purine-nucleoside phosphorylase | - |
| HWU15_RS07465 | 1563703..1563942 | + | 240 | WP_000461845.1 | DUF2443 domain-containing protein | - |
| HWU15_RS07470 | 1563943..1565736 | + | 1794 | WP_237015433.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| HWU15_RS07475 | 1565758..1566384 | + | 627 | WP_000451941.1 | FAD-dependent thymidylate synthase | - |
| HWU15_RS07480 | 1566737..1567873 | - | 1137 | WP_237015434.1 | restriction endonuclease subunit S | - |
| HWU15_RS07485 | 1567882..1570335 | - | 2454 | WP_237015435.1 | type I restriction-modification system subunit M | - |
| HWU15_RS07490 | 1570400..1571472 | + | 1073 | Protein_1458 | HsdR family type I site-specific deoxyribonuclease | - |
| HWU15_RS07495 | 1571767..1572843 | + | 1077 | WP_212790465.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HWU15_RS07500 | 1572905..1574107 | - | 1203 | WP_237015436.1 | hypothetical protein | - |
| HWU15_RS07505 | 1574107..1575492 | - | 1386 | WP_237015437.1 | hypothetical protein | - |
| HWU15_RS07510 | 1575496..1577682 | - | 2187 | WP_237015438.1 | competence protein | - |
| HWU15_RS07515 | 1577703..1579097 | - | 1395 | WP_237015439.1 | hypothetical protein | - |
| HWU15_RS07520 | 1579098..1580135 | - | 1038 | WP_237015440.1 | hypothetical protein | - |
| HWU15_RS07525 | 1580290..1588711 | + | 8422 | Protein_1465 | SNF2-related protein | - |
| HWU15_RS07530 | 1588954..1589610 | + | 657 | WP_000587395.1 | ParA family protein | - |
| HWU15_RS07535 | 1589692..1589976 | + | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HWU15_RS07540 | 1590008..1591192 | + | 1185 | WP_237015441.1 | hypothetical protein | - |
| HWU15_RS07545 | 1591216..1593126 | - | 1911 | WP_237015442.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HWU15_RS07550 | 1593422..1593736 | + | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HWU15_RS07555 | 1593729..1594010 | + | 282 | WP_000921935.1 | YafQ family addiction module toxin | Toxin Detail |
| HWU15_RS07560 | 1594284..1596011 | - | 1728 | WP_237015443.1 | Conjugal transfer protein TraG | VF |
| HWU15_RS07565 | 1596012..1596569 | - | 558 | WP_237015444.1 | hypothetical protein | - |
| HWU15_RS07570 | 1596570..1596860 | - | 291 | WP_000159826.1 | hypothetical protein | - |
| HWU15_RS07575 | 1596857..1597312 | - | 456 | WP_237015445.1 | mobilization protein | - |
| HWU15_RS07580 | 1597309..1598250 | - | 942 | WP_000625132.1 | Type IV secretion system protein VirB11 | VF |
| HWU15_RS07585 | 1598250..1598549 | - | 300 | WP_180532112.1 | hypothetical protein | - |
| HWU15_RS07590 | 1598546..1598809 | - | 264 | WP_231247366.1 | hypothetical protein | - |
| HWU15_RS07595 | 1598802..1599095 | - | 294 | WP_025445948.1 | hypothetical protein | - |
| HWU15_RS07600 | 1599165..1600400 | - | 1236 | WP_237015446.1 | Type IV secretion system protein virB10 | VF |
| HWU15_RS07605 | 1600397..1601938 | - | 1542 | WP_237015447.1 | hypothetical protein | VF |
| HWU15_RS07610 | 1601938..1602924 | - | 987 | WP_237015448.1 | hypothetical protein | VF |
| HWU15_RS08090 | 1602926..1603054 | - | 129 | WP_268217798.1 | hypothetical protein | - |
| HWU15_RS07615 | 1603054..1604988 | - | 1935 | WP_237016071.1 | type IA DNA topoisomerase | - |
| HWU15_RS07620 | 1604981..1607479 | - | 2499 | Protein_1485 | Type IV secretion system protein PtlC | VF |
| HWU15_RS07625 | 1607492..1607680 | - | 189 | WP_001871305.1 | hypothetical protein | - |
| HWU15_RS07630 | 1607753..1608055 | - | 303 | WP_237015449.1 | TrbC/VirB2 family protein | - |
| HWU15_RS07635 | 1608045..1609961 | - | 1917 | WP_237015450.1 | toprim domain-containing protein | - |
| HWU15_RS07640 | 1609972..1610736 | - | 765 | WP_088297852.1 | hypothetical protein | - |
| HWU15_RS07645 | 1610792..1612699 | + | 1908 | Protein_1490 | HsdR family type I site-specific deoxyribonuclease | - |
| HWU15_RS07650 | 1612699..1613406 | + | 708 | WP_237015451.1 | SprT family zinc-dependent metalloprotease | - |
| HWU15_RS07655 | 1613496..1616021 | - | 2526 | WP_237015452.1 | TonB-dependent receptor family protein | - |
| HWU15_RS07660 | 1616370..1617338 | - | 969 | WP_237015453.1 | arginase | - |
| HWU15_RS07665 | 1617351..1618778 | - | 1428 | WP_237015454.1 | amino acid permease | - |
| HWU15_RS07670 | 1618978..1620120 | + | 1143 | WP_237015455.1 | alanine dehydrogenase | - |
| HWU15_RS07675 | 1620246..1621948 | + | 1703 | Protein_1496 | DUF262 domain-containing protein | - |
| HWU15_RS07680 | 1621959..1622687 | - | 729 | WP_237015456.1 | hypothetical protein | VF |
| HWU15_RS07685 | 1622873..1623728 | + | 856 | Protein_1498 | NAD(+)/NADH kinase | - |
| HWU15_RS07690 | 1623741..1625315 | + | 1575 | WP_237015457.1 | DNA repair protein RecN | - |
| HWU15_RS07695 | 1625312..1626619 | + | 1308 | WP_237015458.1 | NFACT family protein | - |
| HWU15_RS07700 | 1626638..1626934 | + | 297 | WP_047417631.1 | hypothetical protein | - |
| HWU15_RS07705 | 1626978..1627352 | + | 375 | Protein_1502 | prohead core protein | - |
| HWU15_RS07710 | 1627330..1627686 | - | 357 | WP_237015459.1 | hypothetical protein | - |
| HWU15_RS07715 | 1627688..1628158 | - | 471 | WP_237015460.1 | hypothetical protein | - |
| HWU15_RS07720 | 1628567..1628707 | + | 141 | WP_180641544.1 | hypothetical protein | - |
| HWU15_RS07725 | 1628733..1629596 | - | 864 | WP_014662301.1 | 3'-5' exonuclease | - |
| HWU15_RS07730 | 1629574..1630227 | - | 654 | WP_237015461.1 | Ribulose-phosphate 3-epimerase | VF |
| HWU15_RS07735 | 1630298..1631170 | + | 873 | WP_237015462.1 | class 1 fructose-bisphosphatase | - |
| HWU15_RS07740 | 1631170..1631373 | + | 204 | WP_014537201.1 | hypothetical protein | - |
| HWU15_RS07745 | 1631386..1632282 | + | 897 | WP_237015463.1 | SAM-dependent methyltransferase | - |
| HWU15_RS07750 | 1632275..1633006 | + | 732 | WP_237015464.1 | type II restriction endonuclease | - |
| HWU15_RS07755 | 1633007..1633153 | + | 147 | WP_237015465.1 | hypothetical protein | - |
| HWU15_RS07760 | 1633195..1634028 | - | 834 | WP_237015466.1 | DNA cytosine methyltransferase | - |
| HWU15_RS07765 | 1634355..1635116 | + | 762 | WP_000323693.1 | DUF3944 domain-containing protein | - |
| HWU15_RS07770 | 1635201..1635341 | + | 141 | WP_000071311.1 | hypothetical protein | - |
| HWU15_RS07775 | 1635946..1636662 | - | 717 | WP_237015467.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HWU15_RS07780 | 1636634..1636885 | - | 252 | WP_220917891.1 | hypothetical protein | - |
| HWU15_RS07785 | 1637038..1637613 | - | 576 | WP_237015468.1 | hypothetical protein | - |
| HWU15_RS07790 | 1637666..1638733 | - | 1068 | WP_237015469.1 | translation elongation factor Ts | - |
| HWU15_RS07795 | 1638733..1639527 | - | 795 | WP_000258279.1 | 30S ribosomal protein S2 | - |
| HWU15_RS07800 | 1639778..1642594 | + | 2817 | WP_237015470.1 | RecB-like helicase | - |
| HWU15_RS07805 | 1642617..1643933 | + | 1317 | WP_237015471.1 | sodium/proton antiporter NhaA | - |
| HWU15_RS07810 | 1643981..1644274 | + | 294 | WP_237015472.1 | preprotein translocase subunit YajC | - |
| HWU15_RS07815 | 1644274..1645851 | + | 1578 | WP_000765373.1 | protein translocase subunit SecD | - |
| HWU15_RS07820 | 1645860..1646831 | + | 972 | WP_237015473.1 | protein translocase subunit SecF | - |
| HWU15_RS07825 | 1646841..1647179 | + | 339 | WP_187847157.1 | DUF6394 family protein | - |
| HWU15_RS07830 | 1647189..1649609 | + | 2421 | WP_237015474.1 | leucine--tRNA ligase | - |
| HWU15_RS07835 | 1649606..1650118 | + | 513 | WP_237015475.1 | LPS assembly lipoprotein LptE | - |
| HWU15_RS07840 | 1650108..1651292 | + | 1185 | WP_237015476.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|