MGE detailed information
MGE type: Conjugative plasmid MGE length: 119877 bp
Accession: NZ_CP058210 Location: 1..119877 Organism: Escherichia marmotae strain RHB24-C12 Replicon: plasmid pRHB24-C12_2
Accession: NZ_CP058210 Location: 1..119877 Organism: Escherichia marmotae strain RHB24-C12 Replicon: plasmid pRHB24-C12_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY12_RS22885 () | 46..1077 | + | 1032 | WP_022630251.1 | replication initiation protein | - |
| HVY12_RS22890 () | 2075..2404 | + | 330 | WP_089592237.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVY12_RS22895 () | 2385..2666 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HVY12_RS22900 () | 2663..2952 | + | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVY12_RS22905 () | 3253..4461 | - | 1209 | WP_113383269.1 | IS91 family transposase ISSbo1 | Transposase |
| HVY12_RS22910 () | 4442..4714 | - | 273 | WP_011310366.1 | hypothetical protein | - |
| HVY12_RS22915 () | 4791..5054 | - | 264 | Protein_6 | IS4 family transposase ISCro3 | Transposase |
| HVY12_RS22920 () | 5172..6400 | + | 1229 | WP_181238250.1 | IS3 family transposase IS2 | Transposase |
| HVY12_RS22925 () | 6868..7107 | - | 240 | WP_053272709.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HVY12_RS22930 () | 7070..7978 | - | 909 | WP_181238251.1 | AraC family transcriptional regulator | - |
| HVY12_RS22935 () | 8390..8846 | + | 457 | Protein_10 | transposase | - |
| HVY12_RS22940 () | 8882..9217 | + | 336 | Protein_11 | IS256 family transposase IS1414 | Transposase |
| HVY12_RS22945 () | 9271..10425 | - | 1155 | WP_181238252.1 | IS481 family transposase ISEc19 | Transposase |
| HVY12_RS22950 () | 10527..10838 | + | 312 | Protein_13 | transposase | - |
| HVY12_RS22955 () | 10886..11092 | - | 207 | WP_053272645.1 | P fimbrial regulatory protein KS71A | VF |
| HVY12_RS22960 () | 11644..11943 | + | 300 | WP_181238253.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HVY12_RS22965 () | 11951..12493 | + | 543 | WP_096925848.1 | hypothetical protein | VF |
| HVY12_RS22970 () | 12550..14952 | + | 2403 | WP_181238225.1 | Outer membrane usher protein YraJ | VF |
| HVY12_RS22975 () | 14945..15736 | + | 792 | WP_181237737.1 | Chaperone protein FaeE | VF |
| HVY12_RS22980 () | 15771..16262 | + | 492 | WP_181237736.1 | hypothetical protein | VF |
| HVY12_RS22985 () | 16502..17293 | + | 792 | WP_181238254.1 | K88 fimbrial protein AB | VF |
| HVY12_RS22990 () | 17513..18310 | + | 798 | WP_181238255.1 | K88 fimbrial protein AC | VF |
| HVY12_RS22995 () | 18493..19290 | + | 798 | WP_181238224.1 | hypothetical protein | VF |
| HVY12_RS23000 () | 19321..20085 | + | 765 | WP_181237733.1 | hypothetical protein | VF |
| HVY12_RS23005 () | 20102..20875 | + | 774 | WP_181237732.1 | hypothetical protein | VF |
| HVY12_RS23010 () | 20949..21591 | + | 643 | Protein_25 | hypothetical protein | - |
| HVY12_RS23015 () | 21581..22339 | + | 759 | WP_181238256.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| HVY12_RS23020 () | 22547..22749 | + | 203 | Protein_27 | 3'-5' exonuclease | - |
| HVY12_RS23025 () | 23008..23769 | - | 762 | WP_181238257.1 | hypothetical protein | VF |
| HVY12_RS23030 () | 24272..25444 | + | 1173 | WP_047612361.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23035 () | 25444..26241 | + | 798 | WP_000544799.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23040 () | 26864..27175 | + | 312 | WP_137460902.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVY12_RS23045 () | 27175..27462 | + | 288 | WP_181238265.1 | helix-turn-helix transcriptional regulator | - |
| HVY12_RS23050 () | 27498..28694 | - | 1197 | WP_001358663.1 | IS110 family transposase ISEc20 | Transposase |
| HVY12_RS23055 () | 29319..30002 | - | 684 | Protein_34 | IS91 family transposase ISEc37 | Transposase |
| HVY12_RS23060 () | 30237..31772 | + | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23065 () | 31789..32544 | + | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23070 () | 32640..33152 | - | 513 | Protein_37 | IS91 family transposase ISEc37 | Transposase |
| HVY12_RS23075 () | 33152..33517 | - | 366 | WP_000124135.1 | hypothetical protein | - |
| HVY12_RS23080 () | 33810..34403 | - | 594 | WP_181238258.1 | proQ/FINO family protein | - |
| HVY12_RS23085 () | 35407..36171 | + | 765 | WP_181238259.1 | helix-turn-helix domain-containing protein | - |
| HVY12_RS23090 () | 36335..37444 | - | 1110 | WP_000737315.1 | porin OmpC | - |
| HVY12_RS23095 () | 38464..39039 | - | 576 | WP_181238260.1 | hypothetical protein | - |
| HVY12_RS23100 () | 39039..39296 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| HVY12_RS23105 () | 39865..40278 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| HVY12_RS23110 () | 40280..41059 | + | 780 | WP_001562906.1 | site-specific integrase | - |
| HVY12_RS23115 () | 41239..41883 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HVY12_RS23120 () | 41970..42278 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HVY12_RS23125 () | 42704..43684 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HVY12_RS23130 () | 43677..44093 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HVY12_RS23135 () | 44095..44706 | - | 612 | Protein_50 | DUF4113 domain-containing protein | - |
| HVY12_RS23140 () | 44807..45979 | + | 1173 | WP_047612361.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23145 () | 45979..46776 | + | 798 | WP_000544799.1 | IS21 family transposase IS21 | Transposase |
| HVY12_RS23150 () | 46836..47504 | - | 669 | Protein_53 | protein ImpB | - |
| HVY12_RS23155 () | 47504..47941 | - | 438 | WP_000109062.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVY12_RS23160 () | 47938..48186 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HVY12_RS23165 () | 48604..49506 | + | 903 | WP_181238266.1 | DUF1281 domain-containing protein | - |
| HVY12_RS23170 () | 49503..49814 | + | 312 | WP_176203790.1 | hypothetical protein | - |
| HVY12_RS23175 () | 49890..50573 | + | 684 | WP_000085874.1 | DNA methylase | - |
| HVY12_RS23180 () | 50574..50795 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HVY12_RS23185 () | 50809..51243 | + | 435 | WP_181238261.1 | DUF1380 family protein | - |
| HVY12_RS23190 () | 51288..52058 | + | 771 | WP_181238262.1 | hypothetical protein | - |
| HVY12_RS23195 () | 52596..52898 | + | 303 | WP_001436678.1 | antirestriction protein | - |
| HVY12_RS23200 () | 52945..53367 | + | 423 | WP_113889640.1 | DUF1380 family protein | - |
| HVY12_RS23205 () | 53562..53876 | + | 315 | WP_024184663.1 | hypothetical protein | - |
| HVY12_RS23210 () | 54260..54787 | + | 528 | WP_181238263.1 | single-stranded DNA-binding protein | - |
| HVY12_RS23215 () | 54845..55078 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| HVY12_RS23220 () | 55137..57095 | + | 1959 | WP_181238264.1 | ParB/RepB/Spo0J family partition protein | - |
| HVY12_RS23225 () | 57150..57584 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HVY12_RS23230 () | 57581..58300 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HVY12_RS23235 () | 58297..58893 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HVY12_RS23240 () | 59356..59856 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| HVY12_RS23245 () | 59996..60295 | - | 300 | WP_001348082.1 | hypothetical protein | - |
| HVY12_RS23250 () | 60585..61019 | + | 435 | WP_181238236.1 | post-segregation killing protein PndC | - |
| HVY12_RS23255 () | 61113..61379 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVY12_RS23260 () | 61444..62346 | + | 903 | WP_030003452.1 | Recombination-promoting nuclease RpnA | VF |
| HVY12_RS23265 () | 62409..62603 | + | 195 | WP_001496986.1 | hypothetical protein | VF |
| HVY12_RS23270 () | 62634..62885 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| HVY12_RS23275 () | 63465..64313 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| HVY12_RS23280 () | 64398..64733 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVY12_RS23285 () | 64966..65298 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HVY12_RS23290 () | 65309..68008 | + | 2700 | WP_001360283.1 | Protein TraI | Relaxase |
| HVY12_RS23295 () | 68045..70336 | - | 2292 | WP_181238237.1 | conjugal transfer protein TrbC | - |
| HVY12_RS23300 () | 70329..71399 | - | 1071 | WP_181238238.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVY12_RS23305 () | 71418..72626 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 72806..72863 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 72806..72863 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 72806..72863 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 72806..72863 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| HVY12_RS23310 () | 72918..73070 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HVY12_RS23315 () | 73142..73393 | - | 252 | WP_160529436.1 | hypothetical protein | - |
| HVY12_RS23320 () | 74052..74228 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| HVY12_RS23325 () | 74437..74646 | - | 210 | WP_000416064.1 | hemolysin expression modulator Hha | - |
| HVY12_RS23330 () | 74744..75358 | - | 615 | WP_000578646.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVY12_RS23335 () | 75434..77602 | - | 2169 | WP_181238239.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| HVY12_RS23340 () | 77699..78283 | - | 585 | WP_181238240.1 | IncI1-type conjugal transfer protein TraX | - |
| HVY12_RS23345 () | 78312..79514 | - | 1203 | WP_001604511.1 | IncI1-type conjugal transfer protein TraW | - |
| HVY12_RS23350 () | 79481..80095 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| HVY12_RS23355 () | 80095..83139 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| HVY12_RS23360 () | 83229..84029 | - | 801 | WP_064198685.1 | IncI1-type conjugal transfer protein TraT | - |
| HVY12_RS23365 () | 84013..84201 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVY12_RS23370 () | 84265..84669 | - | 405 | WP_181238241.1 | conjugal transfer protein TraR | - |
| HVY12_RS23375 () | 84719..85246 | - | 528 | WP_022630880.1 | conjugal transfer protein TraQ | - |
| HVY12_RS23380 () | 85246..85950 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| HVY12_RS23385 () | 85950..87239 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| HVY12_RS23390 () | 87242..87838 | - | 597 | Protein_101 | hypothetical protein | VF |
| HVY12_RS23395 () | 88073..89608 | + | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23400 () | 89625..90380 | + | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| HVY12_RS23405 () | 90377..90484 | - | 108 | Protein_104 | pcar domain protein | - |
| HVY12_RS23410 () | 90479..90871 | - | 393 | Protein_105 | IncI1-type conjugal transfer protein TraN | - |
| HVY12_RS23415 () | 90882..91574 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| HVY12_RS23420 () | 91571..91918 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVY12_RS23425 () | 91936..95703 | - | 3768 | WP_181238242.1 | DNA primase | - |
| HVY12_RS23430 () | 95793..96344 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| HVY12_RS23435 () | 96359..96649 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| HVY12_RS23440 () | 96646..97794 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HVY12_RS23445 () | 97791..98609 | - | 819 | WP_181238243.1 | hypothetical protein | VF |
| HVY12_RS23450 () | 98606..99064 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HVY12_RS23455 () | 99458..100042 | - | 585 | WP_181238244.1 | histidine phosphatase family protein | - |
| HVY12_RS23460 () | 100102..101304 | - | 1203 | WP_181238245.1 | conjugal transfer protein TraF | - |
| HVY12_RS23465 () | 101390..102214 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| HVY12_RS23470 () | 102365..103519 | - | 1155 | WP_001139955.1 | integrase | - |
| HVY12_RS23475 () | 103677..103925 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| HVY12_RS23480 () | 103922..105214 | - | 1293 | WP_181238246.1 | hypothetical protein | VF |
| HVY12_RS23485 () | 105214..105870 | - | 657 | WP_181238247.1 | hypothetical protein | VF |
| HVY12_RS23490 () | 105855..106415 | - | 561 | WP_181238248.1 | hypothetical protein | VF |
| HVY12_RS23495 () | 106425..107039 | - | 615 | WP_181238249.1 | hypothetical protein | VF |
| HVY12_RS23500 () | 107056..108141 | - | 1086 | WP_063082675.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HVY12_RS23505 () | 108154..109707 | - | 1554 | WP_001697923.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HVY12_RS23510 () | 109718..110170 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| HVY12_RS23515 () | 110157..111452 | - | 1296 | WP_001545757.1 | type 4b pilus protein PilO2 | - |
| HVY12_RS23520 () | 111445..113127 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HVY12_RS23525 () | 113141..113578 | - | 438 | WP_077128011.1 | hypothetical protein | VF |
| HVY12_RS23530 () | 113578..114645 | - | 1068 | WP_001685263.1 | hypothetical protein | VF |
| HVY12_RS23535 () | 115617..115883 | - | 267 | WP_001545761.1 | hypothetical protein | - |
| HVY12_RS23540 () | 116144..116398 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HVY12_RS23545 () | 116570..117253 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HVY12_RS23550 () | 117507..118040 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| HVY12_RS23555 () | 118482..118769 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| HVY12_RS23560 () | 118687..118950 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|