MGE detailed information
MGE type: Prophage MGE length: 111963 bp
Accession: NZ_CP058207 Location: 1937553..2049515 Organism: Escherichia marmotae strain RHB42-C09 Replicon: chromosome
Accession: NZ_CP058207 Location: 1937553..2049515 Organism: Escherichia marmotae strain RHB42-C09 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV018_RS08830 () | 1933041..1933712 | - | 672 | WP_181237383.1 | two-component system response regulator PhoP | - |
| HV018_RS08835 () | 1933872..1935242 | - | 1371 | WP_000423722.1 | adenylosuccinate lyase | - |
| HV018_RS08840 () | 1935246..1935887 | - | 642 | WP_001516208.1 | high frequency lysogenization protein HflD | - |
| HV018_RS08845 () | 1935922..1937028 | - | 1107 | WP_001516209.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| HV018_RS08850 () | 1937082..1937543 | - | 462 | WP_000476079.1 | phosphatase NudJ | - |
| HV018_RS08855 () | 1937553..1938206 | - | 654 | WP_001516210.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| HV018_RS08860 () | 1938378..1939628 | + | 1251 | WP_000444487.1 | NADP-dependent isocitrate dehydrogenase | - |
| HV018_RS08865 () | 1939742..1940884 | - | 1143 | WP_000741339.1 | hypothetical protein ; Integrase | Integrase |
| HV018_RS08870 () | 1940874..1941110 | - | 237 | WP_000088652.1 | excisionase | - |
| HV018_RS08875 () | 1941250..1941489 | - | 240 | WP_000488406.1 | DUF4222 domain-containing protein | - |
| HV018_RS08880 () | 1941537..1941755 | - | 219 | WP_000763385.1 | TraR/DksA family transcriptional regulator | - |
| HV018_RS08885 () | 1941854..1942069 | - | 216 | WP_000188870.1 | hypothetical protein | - |
| HV018_RS08890 () | 1942146..1942337 | - | 192 | WP_097481797.1 | DUF1382 family protein | - |
| HV018_RS08895 () | 1942310..1942492 | - | 183 | WP_016248606.1 | DUF1317 domain-containing protein | - |
| HV018_RS08900 () | 1942489..1943169 | - | 681 | WP_000186792.1 | YqaJ viral recombinase family protein | - |
| HV018_RS08905 () | 1943166..1943951 | - | 786 | WP_001317715.1 | phage recombination protein Bet | - |
| HV018_RS08910 () | 1943957..1944253 | - | 297 | WP_000995452.1 | host-nuclease inhibitor protein Gam | - |
| HV018_RS08915 () | 1944330..1944536 | - | 207 | Protein_1733 | cell division inhibitor protein | - |
| HV018_RS08920 () | 1945132..1945821 | - | 690 | WP_000858975.1 | helix-turn-helix transcriptional regulator | - |
| HV018_RS08925 () | 1945926..1946156 | + | 231 | WP_001067458.1 | helix-turn-helix domain-containing protein | - |
| HV018_RS08930 () | 1946226..1946765 | + | 540 | WP_001182772.1 | toxin YdaT domain-containing protein | - |
| HV018_RS08935 () | 1946762..1947781 | + | 1020 | WP_181237384.1 | replication protein | - |
| HV018_RS08940 () | 1947778..1948479 | + | 702 | WP_181237385.1 | Replication protein P | - |
| HV018_RS08945 () | 1948476..1948778 | + | 303 | WP_001473963.1 | hypothetical protein | - |
| HV018_RS08950 () | 1949027..1950529 | - | 1503 | WP_000195116.1 | DUF4041 domain-containing protein | - |
| HV018_RS08955 () | 1951342..1951950 | + | 609 | WP_000211451.1 | hypothetical protein | - |
| HV018_RS08960 () | 1952444..1952695 | + | 252 | WP_001309958.1 | hypothetical protein | - |
| HV018_RS08965 () | 1952792..1952893 | + | 102 | WP_181237386.1 | hypothetical protein | - |
| HV018_RS08970 () | 1952890..1953345 | + | 456 | WP_001053027.1 | DNA base-flipping protein YbcN | - |
| HV018_RS08975 () | 1953345..1953515 | + | 171 | WP_000224914.1 | hypothetical protein | - |
| HV018_RS08980 () | 1953508..1953798 | + | 291 | WP_001516219.1 | DUF1364 domain-containing protein | - |
| HV018_RS08985 () | 1953795..1954157 | + | 363 | WP_001099521.1 | crossover junction endodeoxyribonuclease RusA | - |
| HV018_RS08990 () | 1954154..1954294 | + | 141 | WP_000971070.1 | YlcG family protein | - |
| HV018_RS08995 () | 1954380..1954757 | + | 378 | WP_001204777.1 | antitermination protein | - |
| HV018_RS09000 () | 1954913..1955437 | - | 525 | WP_000780582.1 | lipocalin family protein | - |
| HV018_RS09005 () | 1955630..1956589 | + | 960 | WP_000592546.1 | DUF523 and DUF1722 domain-containing protein | - |
| HV018_RS09010 () | 1956941..1957672 | + | 732 | WP_001146311.1 | helix-turn-helix domain-containing protein | - |
| HV018_RS09015 () | 1957861..1958076 | + | 216 | WP_000839583.1 | class II holin family protein | - |
| HV018_RS09020 () | 1958076..1958573 | + | 498 | WP_097481798.1 | lysozyme | - |
| HV018_RS09025 () | 1958790..1958975 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| HV018_RS09030 () | 1959172..1960629 | + | 1458 | WP_001097893.1 | Trk system potassium transporter TrkG | - |
| HV018_RS09035 () | 1960767..1961555 | + | 789 | WP_181237387.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HV018_RS09040 () | 1961548..1962480 | + | 933 | WP_001614535.1 | hypothetical protein | - |
| HV018_RS09045 () | 1962416..1962667 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| HV018_RS09050 () | 1962671..1963765 | + | 1095 | WP_000089447.1 | terminase small subunit | - |
| HV018_RS09055 () | 1963746..1965047 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| HV018_RS09060 () | 1965050..1966456 | + | 1407 | WP_000763702.1 | DUF4055 domain-containing protein | - |
| HV018_RS09065 () | 1966440..1967552 | + | 1113 | WP_001363932.1 | hypothetical protein | - |
| HV018_RS09070 () | 1967657..1968421 | + | 765 | WP_000770042.1 | hypothetical protein | - |
| HV018_RS09075 () | 1968520..1969659 | + | 1140 | WP_000918487.1 | hypothetical protein | - |
| HV018_RS09080 () | 1969702..1969878 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| HV018_RS09085 () | 1969882..1970277 | + | 396 | WP_181237388.1 | protein singed | - |
| HV018_RS09090 () | 1970277..1970660 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| HV018_RS09095 () | 1970661..1971041 | + | 381 | WP_001029819.1 | hypothetical protein | - |
| HV018_RS09100 () | 1971038..1971430 | + | 393 | WP_000673077.1 | hypothetical protein | - |
| HV018_RS09105 () | 1971457..1972419 | + | 963 | WP_000094292.1 | hypothetical protein | - |
| HV018_RS09110 () | 1972570..1972929 | + | 360 | WP_012565075.1 | hypothetical protein | - |
| HV018_RS09115 () | 1973037..1973237 | + | 201 | WP_001755909.1 | hypothetical protein | - |
| HV018_RS09120 () | 1973403..1976636 | + | 3234 | WP_024240902.1 | phage tail tape measure protein | - |
| HV018_RS09125 () | 1976629..1976967 | + | 339 | WP_000024051.1 | phage tail protein | - |
| HV018_RS09130 () | 1976967..1977665 | + | 699 | WP_105281115.1 | phage minor tail protein L | - |
| HV018_RS09135 () | 1977671..1978414 | + | 744 | WP_181237389.1 | C40 family peptidase | - |
| HV018_RS09140 () | 1978351..1978983 | + | 633 | WP_000090908.1 | tail assembly protein | - |
| HV018_RS09145 () | 1979044..1982457 | + | 3414 | WP_181237390.1 | host specificity protein J | - |
| HV018_RS09150 () | 1982527..1983126 | + | 600 | WP_001230340.1 | hypothetical protein | VF |
| HV018_RS09155 () | 1983191..1985548 | + | 2358 | WP_181237391.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HV018_RS09160 () | 1985548..1985817 | + | 270 | WP_001204892.1 | hypothetical protein | - |
| HV018_RS09165 () | 1985830..1986870 | + | 1041 | WP_181237392.1 | tail fiber domain-containing protein | - |
| HV018_RS09170 () | 1986913..1987206 | + | 294 | WP_000355602.1 | hypothetical protein | - |
| HV018_RS09175 () | 1987226..1987336 | + | 111 | Protein_1785 | tail fiber assembly protein | - |
| HV018_RS09180 () | 1987883..1988632 | + | 750 | WP_000386784.1 | DNA-binding transcriptional activator AppY | - |
| HV018_RS09185 () | 1988882..1989835 | - | 954 | WP_001201818.1 | hypothetical protein | VF |
| HV018_RS09190 () | 1990386..1990538 | + | 153 | WP_181237393.1 | isocitrate dehydrogenase | - |
| HV018_RS09195 () | 1990813..1991223 | - | 411 | WP_001516236.1 | ASCH domain-containing protein | - |
| HV018_RS09200 () | 1991406..1991501 | - | 96 | WP_010380789.1 | DUF1317 family protein | - |
| HV018_RS09205 () | 1991498..1991593 | - | 96 | WP_010380786.1 | hypothetical protein | - |
| HV018_RS09210 () | 1991611..1991760 | - | 150 | WP_105266312.1 | exonuclease | - |
| HV018_RS09215 () | 1991956..1992288 | + | 333 | WP_001070432.1 | SMR family multidrug efflux protein EmrE | - |
| HV018_RS09220 () | 1992349..1993392 | - | 1044 | WP_181237394.1 | alpha/beta hydrolase | - |
| HV018_RS09225 () | 1993754..1994305 | + | 552 | WP_105267735.1 | kinase inhibitor | - |
| HV018_RS09230 () | 1994315..1995109 | + | 795 | Protein_1796 | HTH-type transcriptional activator RhaS | VF |
| HV018_RS09235 () | 1995371..1995457 | + | 87 | Protein_1797 | antitermination protein Q | - |
| HV018_RS09245 () | 1996759..1996954 | + | 196 | Protein_1799 | hypothetical protein | - |
| HV018_RS09250 () | 1997327..1997542 | + | 216 | WP_000066486.1 | cold shock-like protein CspB | - |
| HV018_RS09255 () | 1998687..1999055 | + | 369 | Protein_1801 | terminase small subunit | - |
| HV018_RS09260 () | 1999240..2000349 | + | 1110 | WP_016261941.1 | alkene reductase | - |
| HV018_RS09265 () | 2000350..2001261 | - | 912 | Protein_1803 | hypothetical protein | VF |
| HV018_RS09270 () | 2001490..2001816 | + | 327 | WP_001516246.1 | EthD family reductase | - |
| HV018_RS09275 () | 2001929..2002645 | - | 717 | WP_000532916.1 | transcriptional regulatory protein YeeN | VF |
| HV018_RS09280 () | 2002920..2003249 | - | 330 | WP_181237395.1 | YkgJ family cysteine cluster protein | - |
| HV018_RS09285 () | 2004060..2005583 | + | 1524 | WP_001246517.1 | hypothetical protein | VF |
| HV018_RS09290 () | 2005754..2005972 | + | 219 | WP_001065870.1 | hypothetical protein | - |
| HV018_RS09295 () | 2006280..2006615 | - | 336 | WP_000979974.1 | YmgD family protein | - |
| HV018_RS09300 () | 2006619..2006903 | - | 285 | WP_001516250.1 | glycine zipper family protein | - |
| HV018_RS09305 () | 2007413..2007679 | - | 267 | WP_001185664.1 | cell division topological specificity factor MinE | - |
| HV018_RS09310 () | 2007683..2008495 | - | 813 | WP_000101053.1 | Iron-sulfur cluster carrier protein | VF |
| HV018_RS09315 () | 2008519..2009214 | - | 696 | WP_038355935.1 | septum site-determining protein MinC | - |
| HV018_RS09320 () | 2009343..2009636 | + | 294 | WP_001516252.1 | YcgL domain-containing protein | - |
| HV018_RS09325 () | 2009708..2010367 | + | 660 | WP_000284291.1 | fumarylacetoacetate hydrolase family protein | - |
| HV018_RS09330 () | 2010444..2010905 | + | 462 | WP_000807616.1 | YcgN family cysteine cluster protein | - |
| HV018_RS09335 () | 2011666..2012363 | + | 698 | Protein_1817 | IS1 family transposase IS1R | Transposase |
| HV018_RS09340 () | 2012518..2013303 | - | 786 | WP_000571466.1 | hypothetical protein | VF |
| HV018_RS09345 () | 2013300..2014055 | - | 756 | WP_001516255.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HV018_RS09350 () | 2014134..2015066 | + | 933 | WP_010376204.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| HV018_RS09355 () | 2015082..2016404 | + | 1323 | WP_001184055.1 | murein DD-endopeptidase MepM | - |
| HV018_RS09360 () | 2016523..2017494 | + | 972 | WP_181237396.1 | Lipid A biosynthesis myristoyltransferase | VF |
| HV018_RS09365 () | 2017649..2019091 | - | 1443 | WP_000091161.1 | pyruvate kinase | - |
| HV018_RS09370 () | 2019218..2020087 | - | 870 | WP_001056699.1 | DNA-binding transcriptional regulator HexR | - |
| HV018_RS09375 () | 2020110..2020409 | + | 300 | WP_000155615.1 | hypothetical protein | - |
| HV018_RS09380 () | 2020425..2021900 | + | 1476 | WP_000301721.1 | glucose-6-phosphate dehydrogenase | - |
| HV018_RS09385 () | 2022135..2023946 | + | 1812 | WP_001516259.1 | phosphogluconate dehydratase | - |
| HV018_RS09390 () | 2023984..2024625 | + | 642 | WP_000800529.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HV018_RS09395 () | 2024681..2025859 | - | 1179 | WP_181237397.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HV018_RS09400 () | 2026001..2026291 | + | 291 | WP_000257577.1 | DNA damage-inducible protein YebG | - |
| HV018_RS09405 () | 2026358..2026714 | + | 357 | WP_001516261.1 | protein YebF | - |
| HV018_RS09410 () | 2027021..2027680 | + | 660 | WP_000024720.1 | tellurite resistance TerB family protein | - |
| HV018_RS09415 () | 2027889..2029949 | + | 2061 | WP_016248631.1 | oligopeptidase B | - |
| HV018_RS09420 () | 2029946..2030608 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| HV018_RS09425 () | 2030633..2031289 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| HV018_RS09430 () | 2031390..2031620 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| HV018_RS09435 () | 2031759..2032133 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| HV018_RS09440 () | 2032137..2033009 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| HV018_RS09445 () | 2033022..2033363 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - () | 2033393..2033638 | - | 246 | - | - | Antitoxin Detail |
| - () | 2033521..2033624 | + | 104 | - | - | Toxin Detail |
| HV018_RS09450 () | 2033773..2034429 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| HV018_RS09455 () | 2034430..2034621 | - | 192 | WP_001516263.1 | YebW family protein | - |
| HV018_RS09460 () | 2034726..2034962 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| HV018_RS09465 () | 2035078..2036517 | - | 1440 | WP_024191868.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV018_RS09470 () | 2036597..2039230 | - | 2634 | WP_000076949.1 | hypothetical protein | VF |
| HV018_RS09475 () | 2039199..2040482 | - | 1284 | WP_001516266.1 | membrane integrity lipid transport subunit YebS | - |
| HV018_RS09480 () | 2040612..2041109 | + | 498 | WP_001043873.1 | L-methionine (R)-S-oxide reductase | - |
| HV018_RS09485 () | 2041206..2041904 | + | 699 | WP_000431382.1 | RNA chaperone ProQ | - |
| HV018_RS09490 () | 2041924..2043972 | + | 2049 | WP_001516268.1 | carboxy terminal-processing peptidase | - |
| HV018_RS09495 () | 2044164..2045045 | + | 882 | WP_000984500.1 | protease HtpX | - |
| HV018_RS09500 () | 2045092..2046465 | - | 1374 | WP_010376166.1 | MFS transporter | - |
| HV018_RS09505 () | 2046642..2047433 | + | 792 | WP_001262177.1 | DNA-binding transcriptional regulator KdgR | - |
| HV018_RS09510 () | 2047588..2047827 | - | 240 | WP_001211005.1 | membrane protein | - |
| HV018_RS09515 () | 2047985..2048128 | + | 144 | WP_000714549.1 | PhoP/PhoQ regulator MgrB | - |
| HV018_RS09520 () | 2048203..2048490 | + | 288 | WP_001006870.1 | YebO family protein | - |
| HV018_RS09525 () | 2049150..2049266 | + | 117 | WP_032141266.1 | YobF family protein | - |
| HV018_RS09530 () | 2049306..2049515 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HV018_RS09535 () | 2049682..2050491 | + | 810 | WP_000010094.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HV018_RS09540 () | 2050488..2051054 | - | 567 | WP_001027737.1 | manganese efflux pump MntP | - |
| HV018_RS09545 () | 2051472..2051930 | - | 459 | WP_000156311.1 | DUF986 family protein | - |
| HV018_RS09550 () | 2051985..2052836 | - | 852 | WP_001516270.1 | PTS mannose transporter subunit IID | - |
| HV018_RS09555 () | 2052849..2053649 | - | 801 | WP_000406934.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|