Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2033393..2033638 | Replicon | chromosome |
| Accession | NZ_CP058207 | ||
| Organism | Escherichia marmotae strain RHB42-C09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2033521..2033624 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2033393..2033638 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV018_RS09420 | 2029946..2030608 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| HV018_RS09425 | 2030633..2031289 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| HV018_RS09430 | 2031390..2031620 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| HV018_RS09435 | 2031759..2032133 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| HV018_RS09440 | 2032137..2033009 | + | 873 | WP_000879335.1 | copper homeostasis membrane protein CopD | - |
| HV018_RS09445 | 2033022..2033363 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 2033393..2033638 | - | 246 | - | - | Antitoxin |
| - | 2033521..2033624 | + | 104 | - | - | Toxin |
| HV018_RS09450 | 2033773..2034429 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| HV018_RS09455 | 2034430..2034621 | - | 192 | WP_001516263.1 | YebW family protein | - |
| HV018_RS09460 | 2034726..2034962 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| HV018_RS09465 | 2035078..2036517 | - | 1440 | WP_024191868.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1937553..2049515 | 111962 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166105 NZ_CP058207:2033521-2033624 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT166105 NZ_CP058207:c2033638-2033393 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
