MGE detailed information
MGE type: Conjugative plasmid MGE length: 124527 bp
Accession: NZ_CP057562 Location: 1..124527 Organism: Escherichia fergusonii strain RHB23-C02 Replicon: plasmid pRHB23-C02_2
Accession: NZ_CP057562 Location: 1..124527 Organism: Escherichia fergusonii strain RHB23-C02 Replicon: plasmid pRHB23-C02_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX92_RS21715 () | 46..1077 | + | 1032 | WP_000907867.1 | replication initiation protein | - |
| HVX92_RS21720 () | 1989..2258 | + | 270 | WP_064773164.1 | hypothetical protein | Antitoxin Detail |
| HVX92_RS21725 () | 2255..2536 | + | 282 | WP_181812597.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVX92_RS21730 () | 2600..3348 | + | 749 | Protein_3 | 3'-5' exonuclease | - |
| HVX92_RS21735 () | 3465..3947 | + | 483 | WP_181812598.1 | hypothetical protein | - |
| HVX92_RS21740 () | 4248..4595 | + | 348 | WP_000142449.1 | hypothetical protein | - |
| HVX92_RS21745 () | 4615..5205 | - | 591 | WP_181812599.1 | hypothetical protein | - |
| HVX92_RS21750 () | 5205..5462 | - | 258 | WP_000371887.1 | hypothetical protein | - |
| HVX92_RS21755 () | 5750..6871 | + | 1122 | WP_181812600.1 | DUF3800 domain-containing protein | - |
| HVX92_RS21760 () | 6914..7405 | - | 492 | WP_001090930.1 | hypothetical protein | - |
| HVX92_RS21765 () | 7697..7987 | + | 291 | WP_181812601.1 | hypothetical protein | - |
| HVX92_RS21770 () | 7977..8876 | + | 900 | WP_181812602.1 | nucleotide-binding protein | - |
| HVX92_RS21775 () | 8981..10510 | - | 1530 | WP_181812611.1 | IS66-like element ISEc8 family transposase | - |
| HVX92_RS21780 () | 10557..10904 | - | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HVX92_RS21785 () | 10901..11281 | - | 381 | WP_001171530.1 | IS66 family insertion sequence hypothetical protein | - |
| HVX92_RS21790 () | 11376..11534 | + | 159 | Protein_15 | IS30 family transposase | - |
| HVX92_RS21795 () | 11547..11804 | - | 258 | Protein_16 | transposase | - |
| HVX92_RS21800 () | 12096..19907 | - | 7812 | WP_181812603.1 | DUF3491 domain-containing protein | - |
| HVX92_RS21805 () | 20354..20511 | + | 158 | Protein_18 | transposase | - |
| HVX92_RS21810 () | 20700..21395 | - | 696 | WP_181812604.1 | IS21-like element helper ATPase IstB | - |
| HVX92_RS21815 () | 21395..22417 | - | 1023 | WP_181812605.1 | IS21 family transposase | - |
| HVX92_RS21820 () | 22553..23404 | + | 852 | Protein_21 | LysR family transcriptional regulator | - |
| HVX92_RS21825 () | 23502..24812 | + | 1311 | Protein_22 | FAD-dependent tricarballylate dehydrogenase TcuA | - |
| HVX92_RS21830 () | 24799..25275 | + | 477 | Protein_23 | tricarballylate utilization protein TcuB | - |
| HVX92_RS21835 () | 25276..25674 | - | 399 | Protein_24 | IS66 family transposase | - |
| HVX92_RS21840 () | 25716..26084 | + | 369 | Protein_25 | ATP-binding protein | - |
| HVX92_RS21845 () | 26740..27117 | + | 378 | WP_086258910.1 | M15 family metallopeptidase | - |
| HVX92_RS21850 () | 27319..27471 | + | 153 | WP_072033162.1 | Hok/Gef family protein | - |
| HVX92_RS21855 () | 27765..28154 | + | 390 | Protein_28 | recombinase family protein | - |
| HVX92_RS21860 () | 28147..28362 | + | 216 | Protein_29 | Tn3 family transposase | - |
| HVX92_RS21865 () | 28419..29158 | + | 740 | Protein_30 | IS1 family transposase | - |
| HVX92_RS21870 () | 29155..30207 | - | 1053 | WP_181812606.1 | hypothetical protein | - |
| HVX92_RS21875 () | 30419..31009 | - | 591 | WP_021560534.1 | hypothetical protein | - |
| HVX92_RS21880 () | 31027..31251 | - | 225 | WP_181812612.1 | hypothetical protein | - |
| HVX92_RS21885 () | 31584..32036 | + | 453 | WP_001825139.1 | N-acetyltransferase | - |
| HVX92_RS21890 () | 32068..33600 | - | 1533 | WP_001017349.1 | NAD(P)-binding domain-containing protein | - |
| HVX92_RS21895 () | 33597..33866 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| HVX92_RS21900 () | 33868..34884 | - | 1017 | WP_032280058.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HVX92_RS21905 () | 34887..35714 | - | 828 | WP_181812607.1 | HAD-IIB family hydrolase | - |
| HVX92_RS21910 () | 35698..36936 | - | 1239 | WP_012006540.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| HVX92_RS21915 () | 37569..38570 | + | 1002 | WP_181812608.1 | DUF4238 domain-containing protein | - |
| HVX92_RS21920 () | 38754..39098 | - | 345 | WP_000793772.1 | hypothetical protein | - |
| HVX92_RS21925 () | 39595..39849 | - | 255 | WP_000678529.1 | hypothetical protein | - |
| HVX92_RS21930 () | 39893..40819 | - | 927 | WP_001280608.1 | hypothetical protein | - |
| HVX92_RS21935 () | 41076..41186 | + | 111 | Protein_44 | transposase domain-containing protein | - |
| HVX92_RS21940 () | 41349..42209 | + | 861 | WP_000704533.1 | alpha/beta hydrolase | - |
| HVX92_RS21945 () | 42523..42735 | + | 213 | WP_000383663.1 | hypothetical protein | - |
| HVX92_RS21950 () | 42797..43420 | - | 624 | WP_089520145.1 | hypothetical protein | - |
| HVX92_RS21955 () | 43420..43677 | - | 258 | WP_000343099.1 | hypothetical protein | - |
| HVX92_RS21960 () | 44247..44660 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| HVX92_RS21965 () | 44662..45447 | + | 786 | WP_001164192.1 | site-specific integrase | - |
| HVX92_RS21970 () | 46031..46663 | + | 633 | WP_000312331.1 | ParA family protein | - |
| HVX92_RS21975 () | 46663..47037 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| HVX92_RS21980 () | 47276..48250 | + | 975 | WP_001217836.1 | hypothetical protein | - |
| HVX92_RS21985 () | 48254..48646 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| HVX92_RS21990 () | 49327..50229 | + | 903 | WP_015059302.1 | DUF1281 domain-containing protein | - |
| HVX92_RS21995 () | 50226..50537 | + | 312 | WP_032151771.1 | hypothetical protein | - |
| HVX92_RS22000 () | 50613..51296 | + | 684 | WP_181812609.1 | DNA methylase | - |
| HVX92_RS22005 () | 51297..51518 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| HVX92_RS22010 () | 51532..51966 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| HVX92_RS22015 () | 52012..52788 | + | 777 | WP_109868348.1 | hypothetical protein | - |
| HVX92_RS22020 () | 53329..53631 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| HVX92_RS22025 () | 53678..54100 | + | 423 | WP_000271705.1 | DUF1380 family protein | - |
| HVX92_RS22030 () | 54097..54288 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HVX92_RS22035 () | 54359..54673 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HVX92_RS22040 () | 55709..57610 | + | 1902 | WP_181812610.1 | group II intron reverse transcriptase/maturase | - |
| HVX92_RS22045 () | 57760..58245 | + | 486 | WP_031222835.1 | single-stranded DNA-binding protein | - |
| HVX92_RS22050 () | 58303..58536 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| HVX92_RS22055 () | 58595..60553 | + | 1959 | WP_001145480.1 | ParB/RepB/Spo0J family partition protein | - |
| HVX92_RS22060 () | 60608..61042 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HVX92_RS22065 () | 61039..61758 | + | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| HVX92_RS22070 () | 61755..62351 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HVX92_RS22075 () | 62814..63314 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HVX92_RS22080 () | 64043..64477 | + | 435 | WP_000218865.1 | hypothetical protein | - |
| HVX92_RS22085 () | 64571..64837 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVX92_RS22090 () | 64902..65840 | + | 939 | WP_000038403.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HVX92_RS22095 () | 65840..66085 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| HVX92_RS22100 () | 66116..66367 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HVX92_RS22105 () | 66401..66598 | - | 198 | WP_001161117.1 | hypothetical protein | - |
| HVX92_RS22110 () | 66947..67795 | + | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| HVX92_RS22115 () | 67881..68216 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVX92_RS22120 () | 68450..68782 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HVX92_RS22125 () | 68793..71492 | + | 2700 | WP_021565547.1 | IncI1-type relaxase NikB | - |
| HVX92_RS22130 () | 71518..72090 | + | 573 | WP_181812592.1 | hypothetical protein | - |
| HVX92_RS22135 () | 72140..74329 | - | 2190 | WP_000443943.1 | peptidase domain-containing ABC transporter | - |
| HVX92_RS22140 () | 74329..75582 | - | 1254 | WP_015059309.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HVX92_RS22145 () | 75685..76320 | - | 636 | WP_000999379.1 | CPBP family intramembrane metalloprotease | - |
| HVX92_RS22150 () | 77105..79396 | - | 2292 | WP_001289267.1 | hypothetical protein | - |
| HVX92_RS22155 () | 79389..80459 | - | 1071 | WP_047088495.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVX92_RS22160 () | 80478..81686 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 81866..81928 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 81866..81928 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 81866..81928 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 81866..81928 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| HVX92_RS22165 () | 81978..82130 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| HVX92_RS22170 () | 82202..82453 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| HVX92_RS22175 () | 83112..83288 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| HVX92_RS22180 () | 83497..83706 | - | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| HVX92_RS22185 () | 83804..84418 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVX92_RS22190 () | 84494..86662 | - | 2169 | WP_181812593.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| HVX92_RS22195 () | 86759..87343 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| HVX92_RS22200 () | 87372..88574 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HVX92_RS22205 () | 88541..89155 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| HVX92_RS22210 () | 89155..92199 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| HVX92_RS22215 () | 92289..93089 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HVX92_RS22220 () | 93073..93261 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVX92_RS22225 () | 93325..93729 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HVX92_RS22230 () | 93780..94307 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HVX92_RS22235 () | 94307..95014 | - | 708 | WP_089520083.1 | IncI1-type conjugal transfer protein TraP | - |
| HVX92_RS22240 () | 95014..96303 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| HVX92_RS22245 () | 96306..97289 | - | 984 | WP_001191878.1 | IncI1-type conjugal transfer protein TraN | - |
| HVX92_RS22250 () | 97300..97992 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HVX92_RS22255 () | 97989..98336 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVX92_RS22260 () | 98354..102121 | - | 3768 | WP_181812594.1 | DNA primase | - |
| HVX92_RS22265 () | 102211..102762 | - | 552 | WP_000014584.1 | phospholipase D family protein | - |
| HVX92_RS22270 () | 102777..103067 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HVX92_RS22275 () | 103064..104212 | - | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| HVX92_RS22280 () | 104209..105027 | - | 819 | WP_181812595.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| HVX92_RS22285 () | 105024..105482 | - | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| HVX92_RS22290 () | 105877..106461 | - | 585 | WP_000977526.1 | histidine phosphatase family protein | - |
| HVX92_RS22295 () | 106521..107723 | - | 1203 | WP_181812596.1 | conjugal transfer protein TraF | - |
| HVX92_RS22300 () | 107809..108633 | - | 825 | WP_001238943.1 | hypothetical protein | - |
| HVX92_RS22305 () | 108841..108966 | + | 126 | Protein_118 | transposase | - |
| HVX92_RS22310 () | 109023..110315 | - | 1293 | WP_001350014.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HVX92_RS22315 () | 110315..110971 | - | 657 | WP_001193549.1 | prepilin peptidase | - |
| HVX92_RS22320 () | 110956..111516 | - | 561 | WP_000014005.1 | lytic transglycosylase domain-containing protein | - |
| HVX92_RS22325 () | 111526..112140 | - | 615 | WP_062858101.1 | pilus assembly protein PilX | - |
| HVX92_RS22330 () | 112157..113242 | - | 1086 | WP_001208802.1 | type II secretion system F family protein | - |
| HVX92_RS22335 () | 113255..114808 | - | 1554 | WP_000362206.1 | Flp pilus assembly complex ATPase component TadA | - |
| HVX92_RS22340 () | 114819..115271 | - | 453 | WP_001247337.1 | type IV pilus biogenesis protein PilP | - |
| HVX92_RS22345 () | 115258..116553 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| HVX92_RS22350 () | 116546..118228 | - | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| HVX92_RS22355 () | 118242..118679 | - | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| HVX92_RS22360 () | 118679..119746 | - | 1068 | WP_042012078.1 | type IV pilus biogenesis lipoprotein PilL | - |
| HVX92_RS22365 () | 120793..121047 | - | 255 | WP_041031712.1 | PilI type IV pilus biogenesis protein | - |
| HVX92_RS22370 () | 121219..121902 | - | 684 | WP_001377964.1 | hypothetical protein | - |
| HVX92_RS22375 () | 122156..122689 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HVX92_RS22380 () | 123132..123419 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HVX92_RS22385 () | 123337..123600 | - | 264 | WP_001749178.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|