MGE detailed information
MGE type: Conjugative plasmid MGE length: 104967 bp
Accession: NZ_CP057217 Location: 1..104967 Organism: Escherichia fergusonii strain RHB33-C04 Replicon: plasmid pRHB33-C04_3
Accession: NZ_CP057217 Location: 1..104967 Organism: Escherichia fergusonii strain RHB33-C04 Replicon: plasmid pRHB33-C04_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVZ08_RS23760 () | 46..1077 | + | 1032 | WP_000907867.1 | replication initiation protein | - |
| HVZ08_RS23765 () | 2028..2279 | + | 252 | WP_001139207.1 | plasmid stabilization protein | Antitoxin Detail |
| HVZ08_RS23770 () | 2276..2563 | + | 288 | WP_000222775.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVZ08_RS23775 () | 2573..3118 | + | 546 | WP_181576141.1 | hypothetical protein | - |
| HVZ08_RS23780 () | 3988..4101 | + | 114 | Protein_4 | IS91 family transposase | - |
| HVZ08_RS23785 () | 4100..4387 | - | 288 | WP_024195838.1 | helix-turn-helix transcriptional regulator | - |
| HVZ08_RS23790 () | 4387..4698 | - | 312 | WP_181667538.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HVZ08_RS23795 () | 5437..7008 | - | 1572 | WP_181576148.1 | IS66 family transposase ISCro1 | Transposase |
| HVZ08_RS23800 () | 7028..7375 | - | 348 | WP_069906977.1 | IS66 family transposase ISCro1 | Transposase |
| HVZ08_RS23805 () | 7375..7977 | - | 603 | WP_181576147.1 | IS66 family transposase IS679 | Transposase |
| HVZ08_RS23810 () | 8113..8466 | + | 354 | Protein_10 | IS256 family transposase IS1414 | Transposase |
| HVZ08_RS23815 () | 8466..9680 | - | 1215 | WP_181576146.1 | IS256 family transposase IS1414 | Transposase |
| HVZ08_RS23820 () | 9903..11036 | - | 1134 | WP_181576145.1 | IS110 family transposase ISEc45 | Transposase |
| HVZ08_RS23825 () | 11097..11285 | + | 189 | Protein_13 | IS66 family transposase | - |
| HVZ08_RS23830 () | 11345..11956 | - | 612 | Protein_14 | IS91 family transposase IS91 | Transposase |
| HVZ08_RS23835 () | 11956..12321 | - | 366 | WP_112032305.1 | transposase | - |
| HVZ08_RS23840 () | 12410..12715 | + | 306 | Protein_16 | IS66 family transposase IS682 | Transposase |
| HVZ08_RS23845 () | 13075..14169 | - | 1095 | WP_181576144.1 | hypothetical protein | - |
| HVZ08_RS23850 () | 14229..16865 | - | 2637 | WP_181667513.1 | TcfC E-set like domain-containing protein | - |
| HVZ08_RS23855 () | 17183..17880 | - | 698 | Protein_19 | IS1 family transposase | - |
| HVZ08_RS23860 () | 18713..19078 | + | 366 | WP_000124135.1 | hypothetical protein | - |
| HVZ08_RS23865 () | 19078..20093 | + | 1016 | Protein_21 | IS91 family transposase ISEc37 | Transposase |
| HVZ08_RS23870 () | 20599..20685 | + | 87 | Protein_22 | proQ/FINO family protein | - |
| HVZ08_RS23875 () | 20878..22419 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| HVZ08_RS23880 () | 22434..23180 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| HVZ08_RS23885 () | 23275..23502 | + | 228 | WP_181667542.1 | hypothetical protein | - |
| HVZ08_RS23890 () | 23860..24864 | - | 1005 | WP_088551065.1 | Abi family protein | - |
| HVZ08_RS23895 () | 25012..25620 | - | 609 | WP_160520256.1 | hypothetical protein | - |
| HVZ08_RS23900 () | 26135..26485 | + | 351 | WP_000493380.1 | hypothetical protein | - |
| HVZ08_RS23905 () | 26544..27365 | + | 822 | WP_001316850.1 | hypothetical protein | - |
| HVZ08_RS23910 () | 27365..27634 | + | 270 | Protein_30 | tyrosine-type recombinase/integrase | - |
| HVZ08_RS23915 () | 27696..28493 | - | 798 | WP_181667532.1 | IS21 family transposase IS21 | Transposase |
| HVZ08_RS23920 () | 28493..29665 | - | 1173 | WP_181575950.1 | IS21 family transposase IS21 | Transposase |
| HVZ08_RS23925 () | 29767..30279 | + | 513 | Protein_33 | IS91 family transposase ISSod25 | Transposase |
| HVZ08_RS23930 () | 30458..31102 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HVZ08_RS23935 () | 31189..31497 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HVZ08_RS23940 () | 31910..32890 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HVZ08_RS23945 () | 32883..33299 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HVZ08_RS23950 () | 33301..34575 | - | 1275 | WP_000457498.1 | Y-family DNA polymerase | - |
| HVZ08_RS23955 () | 34575..35012 | - | 438 | WP_063101788.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVZ08_RS23960 () | 35009..35257 | - | 249 | WP_001775014.1 | DinI-like family protein | - |
| HVZ08_RS23965 () | 35675..36577 | + | 903 | WP_181576155.1 | DUF1281 domain-containing protein | - |
| HVZ08_RS23970 () | 36574..36885 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| HVZ08_RS23975 () | 36961..37644 | + | 684 | WP_096970087.1 | DNA methylase | - |
| HVZ08_RS23980 () | 37645..37866 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HVZ08_RS23985 () | 37879..38313 | + | 435 | WP_000274471.1 | DUF1380 family protein | - |
| HVZ08_RS23990 () | 38313..39134 | + | 822 | WP_181576153.1 | hypothetical protein | - |
| HVZ08_RS23995 () | 39669..39971 | + | 303 | WP_077635719.1 | antirestriction protein | - |
| HVZ08_RS24000 () | 40018..40440 | + | 423 | WP_181667539.1 | DUF1380 family protein | - |
| HVZ08_RS24005 () | 40437..40628 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HVZ08_RS24010 () | 40906..42573 | - | 1668 | WP_052991863.1 | group II intron reverse transcriptase/maturase | - |
| HVZ08_RS24015 () | 43740..44267 | + | 528 | WP_181576154.1 | single-stranded DNA-binding protein | - |
| HVZ08_RS24020 () | 44325..44558 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| HVZ08_RS24025 () | 44617..46575 | + | 1959 | WP_134881395.1 | ParB/RepB/Spo0J family partition protein | - |
| HVZ08_RS24030 () | 46630..47064 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| HVZ08_RS24035 () | 47061..47780 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| HVZ08_RS24040 () | 47777..48373 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| HVZ08_RS24045 () | 48836..49336 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HVZ08_RS24050 () | 50065..50499 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HVZ08_RS24055 () | 50593..50859 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HVZ08_RS24060 () | 50924..51862 | + | 939 | WP_181667540.1 | Recombination-promoting nuclease RpnA | VF |
| HVZ08_RS24065 () | 51862..52107 | + | 246 | WP_181667541.1 | hypothetical protein | - |
| HVZ08_RS24070 () | 52138..52389 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HVZ08_RS24075 () | 52549..52725 | - | 177 | WP_181576134.1 | hypothetical protein | - |
| HVZ08_RS24080 () | 52969..53817 | + | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| HVZ08_RS24085 () | 53902..54237 | - | 336 | WP_089618595.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HVZ08_RS24090 () | 54471..54803 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HVZ08_RS24095 () | 54814..57513 | + | 2700 | WP_181576135.1 | Protein TraI | Relaxase |
| HVZ08_RS24100 () | 57550..59841 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| HVZ08_RS24105 () | 59834..60904 | - | 1071 | WP_001542508.1 | IncI1-type conjugal transfer protein TrbB | - |
| HVZ08_RS24110 () | 60923..62131 | - | 1209 | WP_175237471.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 62311..62373 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 62311..62373 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 62311..62373 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 62311..62373 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| HVZ08_RS24115 () | 62423..62575 | + | 153 | WP_024179514.1 | Hok/Gef family protein | Toxin Detail |
| HVZ08_RS24120 () | 62647..62898 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| HVZ08_RS24125 () | 63941..64150 | - | 210 | WP_015059315.1 | hemolysin expression modulator Hha | - |
| HVZ08_RS24130 () | 64248..64862 | - | 615 | WP_181667535.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HVZ08_RS24135 () | 64938..67106 | - | 2169 | WP_181667536.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| HVZ08_RS24140 () | 67203..67787 | - | 585 | WP_003566808.1 | IncI1-type conjugal transfer protein TraX | - |
| HVZ08_RS24145 () | 67816..69018 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HVZ08_RS24150 () | 68985..69599 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| HVZ08_RS24155 () | 69599..72643 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| HVZ08_RS24160 () | 72733..73533 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| HVZ08_RS24165 () | 73517..73705 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HVZ08_RS24170 () | 73769..74173 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| HVZ08_RS24175 () | 74224..74751 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HVZ08_RS24180 () | 74751..75455 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HVZ08_RS24185 () | 75455..76744 | - | 1290 | WP_001271992.1 | conjugal transfer protein TraO | - |
| HVZ08_RS24190 () | 76747..77730 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| HVZ08_RS24195 () | 77741..78433 | - | 693 | WP_181576137.1 | DotI/IcmL family type IV secretion protein | - |
| HVZ08_RS24200 () | 78430..78777 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HVZ08_RS24205 () | 78795..82562 | - | 3768 | WP_181576138.1 | DNA primase | - |
| HVZ08_RS24210 () | 82652..83203 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| HVZ08_RS24215 () | 83218..83508 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HVZ08_RS24220 () | 83505..84653 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| HVZ08_RS24225 () | 84650..85468 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HVZ08_RS24230 () | 85465..85923 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HVZ08_RS24235 () | 86318..86902 | - | 585 | WP_000977526.1 | histidine phosphatase family protein | - |
| HVZ08_RS24240 () | 86962..88164 | - | 1203 | WP_000976350.1 | conjugal transfer protein TraF | - |
| HVZ08_RS24245 () | 88250..89074 | - | 825 | WP_001238943.1 | hypothetical protein | - |
| HVZ08_RS24250 () | 89282..89407 | + | 126 | Protein_98 | transposase | - |
| HVZ08_RS24255 () | 89464..90756 | - | 1293 | WP_181667537.1 | hypothetical protein | VF |
| HVZ08_RS24260 () | 90756..91412 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| HVZ08_RS24265 () | 91397..91957 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HVZ08_RS24270 () | 91967..92580 | - | 614 | Protein_102 | hypothetical protein | VF |
| HVZ08_RS24275 () | 92597..93682 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HVZ08_RS24280 () | 93695..95248 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HVZ08_RS24285 () | 95259..95711 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| HVZ08_RS24290 () | 95698..96993 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| HVZ08_RS24295 () | 96986..98668 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HVZ08_RS24300 () | 98682..99119 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| HVZ08_RS24305 () | 99119..100186 | - | 1068 | WP_042012078.1 | hypothetical protein | VF |
| HVZ08_RS24310 () | 101233..101487 | - | 255 | WP_041031712.1 | PilI type IV pilus biogenesis protein | - |
| HVZ08_RS24315 () | 101659..102342 | - | 684 | WP_001377964.1 | hypothetical protein | - |
| HVZ08_RS24320 () | 102596..103129 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| HVZ08_RS24325 () | 103572..103859 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HVZ08_RS24330 () | 103777..104040 | - | 264 | WP_001749178.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|