MGE detailed information
MGE type: Prophage MGE length: 77428 bp
Accession: NZ_CP056896 Location: 3830525..3907952 Organism: Citrobacter sp. RHBSTW-00021 Replicon: chromosome
Accession: NZ_CP056896 Location: 3830525..3907952 Organism: Citrobacter sp. RHBSTW-00021 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV039_RS18555 () | 3825739..3826821 | + | 1083 | WP_181500361.1 | LacI family DNA-binding transcriptional regulator | - |
| HV039_RS18560 () | 3826943..3830026 | + | 3084 | WP_181500130.1 | beta-galactosidase | - |
| HV039_RS18565 () | 3830079..3830513 | + | 435 | Protein_3639 | oligosaccharide MFS transporter | - |
| HV039_RS18570 () | 3830525..3831222 | - | 698 | Protein_3640 | IS1 family transposase | - |
| HV039_RS18575 () | 3831272..3832012 | + | 741 | WP_103283518.1 | class I SAM-dependent methyltransferase | - |
| HV039_RS18580 () | 3832062..3832625 | - | 564 | WP_049281633.1 | DJ-1/PfpI family protein | - |
| HV039_RS18585 () | 3832791..3834179 | - | 1389 | WP_016151916.1 | APC family permease | - |
| HV039_RS18590 () | 3834567..3835985 | - | 1419 | WP_046276299.1 | glutamine synthetase family protein | - |
| HV039_RS18595 () | 3836197..3836961 | + | 765 | WP_016151914.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase | - |
| HV039_RS18600 () | 3836987..3837544 | + | 558 | WP_016151913.1 | HTH-type transcriptional regulator PuuR | - |
| HV039_RS18605 () | 3837682..3839169 | + | 1488 | WP_016151912.1 | aldehyde dehydrogenase PuuC | - |
| HV039_RS18610 () | 3839172..3840452 | + | 1281 | WP_016155784.1 | FAD-binding oxidoreductase | - |
| HV039_RS18615 () | 3840661..3841788 | + | 1128 | WP_049270897.1 | hydrogenase 1 small subunit | - |
| HV039_RS18620 () | 3841785..3843578 | + | 1794 | WP_103283516.1 | Ni/Fe-hydrogenase large subunit | - |
| HV039_RS18625 () | 3843597..3844331 | + | 735 | WP_016155781.1 | Ni/Fe-hydrogenase b-type cytochrome subunit | - |
| HV039_RS18630 () | 3844328..3844909 | + | 582 | WP_016151907.1 | hydrogenase 1 maturation protease | - |
| HV039_RS18635 () | 3844915..3845322 | + | 408 | WP_103283515.1 | hydrogenase-1 operon protein HyaE | - |
| HV039_RS18640 () | 3845315..3846172 | + | 858 | WP_016155779.1 | hydrogenase expression/formation protein | - |
| HV039_RS18645 () | 3846262..3847806 | + | 1545 | WP_080859982.1 | cytochrome bd-II oxidase subunit 1 | - |
| HV039_RS18650 () | 3847818..3848954 | + | 1137 | WP_103283514.1 | cytochrome d ubiquinol oxidase subunit II | - |
| HV039_RS18655 () | 3848968..3849057 | + | 90 | WP_016151902.1 | cytochrome bd-II oxidase subunit CbdX | - |
| HV039_RS18660 () | 3849541..3850860 | + | 1320 | WP_008321061.1 | hypothetical protein ; Integrase | Integrase |
| HV039_RS18665 () | 3851530..3852510 | + | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| HV039_RS18670 () | 3852795..3852965 | + | 171 | WP_077258089.1 | helix-turn-helix domain-containing protein | - |
| HV039_RS18675 () | 3853194..3854117 | + | 924 | WP_003029584.1 | aminoimidazole riboside kinase | - |
| HV039_RS18680 () | 3854283..3855800 | + | 1518 | WP_003029587.1 | carbohydrate porin | - |
| HV039_RS18685 () | 3855938..3857308 | + | 1371 | WP_000345204.1 | sucrose-specific PTS transporter subunit IIBC | - |
| HV039_RS18690 () | 3857308..3858708 | + | 1401 | WP_003029589.1 | sucrose-6-phosphate hydrolase | - |
| HV039_RS18695 () | 3858738..3859742 | + | 1005 | WP_003029591.1 | LacI family DNA-binding transcriptional regulator | - |
| HV039_RS18700 () | 3859878..3860011 | - | 134 | Protein_3666 | transposase | - |
| HV039_RS18705 () | 3860176..3861684 | - | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| HV039_RS18710 () | 3862357..3862782 | - | 426 | Protein_3668 | IS3 family transposase | - |
| HV039_RS18715 () | 3862792..3863943 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| HV039_RS18720 () | 3864011..3864313 | - | 303 | Protein_3670 | IS3 family transposase ISEc31 | Transposase |
| HV039_RS18725 () | 3864334..3864651 | - | 318 | WP_086550888.1 | hypothetical protein | - |
| HV039_RS18730 () | 3864751..3866433 | - | 1683 | WP_103283513.1 | hypothetical protein | VF |
| HV039_RS18735 () | 3866795..3867499 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HV039_RS18740 () | 3867554..3867784 | + | 231 | Protein_3674 | hypothetical protein | - |
| HV039_RS18745 () | 3867945..3868967 | + | 1023 | WP_103283512.1 | IS110 family transposase IS1618 | Transposase |
| HV039_RS18750 () | 3870015..3870344 | + | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV039_RS18755 () | 3870325..3870606 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HV039_RS18760 () | 3870732..3871712 | + | 981 | WP_032655735.1 | IS5 family transposase ISKpn26 | Transposase |
| HV039_RS18765 () | 3871861..3872553 | + | 693 | Protein_3679 | hypothetical protein | VF |
| HV039_RS18770 () | 3872673..3873971 | - | 1299 | WP_016239723.1 | bifunctional acid phosphatase/4-phytase | - |
| HV039_RS18775 () | 3874051..3874143 | - | 93 | WP_000270305.1 | cytochrome bd-II oxidase subunit CbdX | - |
| HV039_RS18780 () | 3874156..3875292 | - | 1137 | WP_032654819.1 | cytochrome d ubiquinol oxidase subunit II | - |
| HV039_RS18785 () | 3875304..3876263 | - | 960 | Protein_3683 | cytochrome ubiquinol oxidase subunit I | - |
| HV039_RS18790 () | 3876801..3877412 | - | 612 | WP_008325050.1 | inovirus Gp2 family protein | - |
| HV039_RS18795 () | 3877817..3878023 | - | 207 | WP_032654816.1 | AlpA family phage regulatory protein | - |
| HV039_RS18800 () | 3878473..3879399 | + | 927 | WP_032654813.1 | hypothetical protein | - |
| HV039_RS18805 () | 3879506..3880369 | + | 864 | WP_001548935.1 | GTPase family protein | - |
| HV039_RS18810 () | 3880461..3881282 | + | 822 | WP_032654809.1 | DUF945 domain-containing protein | - |
| HV039_RS18815 () | 3881500..3882201 | + | 702 | WP_008324530.1 | WYL domain-containing protein | - |
| HV039_RS18820 () | 3882238..3882474 | + | 237 | WP_001115854.1 | hypothetical protein | - |
| HV039_RS18825 () | 3882474..3882917 | + | 444 | WP_000824223.1 | hypothetical protein | - |
| HV039_RS18830 () | 3882940..3883407 | + | 468 | WP_001547765.1 | hypothetical protein | - |
| HV039_RS18835 () | 3883484..3883723 | + | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| HV039_RS18840 () | 3883821..3884279 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| HV039_RS18845 () | 3884295..3884771 | + | 477 | WP_000811693.1 | RadC family protein | - |
| HV039_RS18850 () | 3884780..3885007 | + | 228 | WP_008324517.1 | DUF987 domain-containing protein | - |
| HV039_RS18855 () | 3885020..3885337 | + | 318 | WP_008324516.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HV039_RS18860 () | 3885358..3885699 | + | 342 | WP_008324514.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| HV039_RS18870 () | 3886319..3886783 | - | 465 | WP_103283511.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| HV039_RS18875 () | 3886977..3888425 | - | 1449 | WP_103283510.1 | hypothetical protein | VF |
| HV039_RS18880 () | 3888768..3889241 | - | 474 | WP_016155774.1 | hypothetical protein | - |
| HV039_RS18885 () | 3889216..3889947 | - | 732 | WP_049270882.1 | winged helix-turn-helix domain-containing protein | - |
| HV039_RS18890 () | 3890092..3890451 | - | 360 | Protein_3703 | hypothetical protein | VF |
| HV039_RS18895 () | 3890461..3891612 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| HV039_RS18900 () | 3891675..3892010 | - | 336 | Protein_3705 | hypothetical protein | VF |
| HV039_RS18905 () | 3892007..3893623 | - | 1617 | WP_103283508.1 | hypothetical protein | VF |
| HV039_RS18910 () | 3893628..3896120 | - | 2493 | WP_103284444.1 | hypothetical protein | VF |
| HV039_RS18915 () | 3896179..3896856 | - | 678 | WP_094761451.1 | hypothetical protein | VF |
| HV039_RS18920 () | 3896910..3897497 | - | 588 | WP_016151870.1 | hypothetical protein | VF |
| HV039_RS18925 () | 3898093..3898812 | - | 720 | WP_103283507.1 | Crp/Fnr family transcriptional regulator | - |
| HV039_RS18930 () | 3899093..3900346 | - | 1254 | WP_016151868.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HV039_RS18935 () | 3900358..3901461 | - | 1104 | WP_103283506.1 | glutamate 5-kinase | - |
| HV039_RS18940 () | 3901751..3902806 | + | 1056 | WP_075846726.1 | phosphoporin PhoE | - |
| HV039_RS18945 () | 3902864..3903265 | - | 402 | WP_016151866.1 | sigma factor-binding protein Crl | - |
| HV039_RS18950 () | 3903323..3904567 | - | 1245 | WP_016155767.1 | esterase FrsA | - |
| HV039_RS18955 () | 3904666..3905124 | - | 459 | WP_003031380.1 | xanthine phosphoribosyltransferase | - |
| HV039_RS18960 () | 3905386..3906843 | + | 1458 | WP_016151863.1 | cytosol nonspecific dipeptidase | - |
| HV039_RS18965 () | 3906897..3907952 | - | 1056 | WP_016155765.1 | DNA polymerase IV | - |
| HV039_RS18970 () | 3908019..3908660 | - | 642 | WP_016151861.1 | hypothetical protein | - |
| HV039_RS18975 () | 3908716..3909714 | - | 999 | WP_016151860.1 | putative lateral flagellar export/assembly protein LafU | - |
| HV039_RS18980 () | 3909717..3910580 | - | 864 | WP_016151859.1 | flagellar motor stator protein MotA | - |
| HV039_RS18985 () | 3910610..3911326 | - | 717 | WP_046275416.1 | FliA/WhiG family RNA polymerase sigma factor | - |
| HV039_RS18990 () | 3911347..3911817 | - | 471 | WP_047357630.1 | flagellar basal body-associated FliL family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|