MGE detailed information
MGE type: Conjugative plasmid MGE length: 167459 bp
Accession: NZ_CP056835 Location: 1..167459 Organism: Citrobacter sp. RHBSTW-00127 Replicon: plasmid pRHBSTW-00127_2
Accession: NZ_CP056835 Location: 1..167459 Organism: Citrobacter sp. RHBSTW-00127 Replicon: plasmid pRHBSTW-00127_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV084_RS24545 () | 1..942 | + | 942 | WP_165690017.1 | replication initiator protein RepA | - |
| HV084_RS24550 () | 2302..2760 | - | 459 | WP_040190671.1 | helix-turn-helix transcriptional regulator | - |
| HV084_RS24555 () | 2822..3058 | + | 237 | WP_032695943.1 | tautomerase family protein | - |
| HV084_RS24560 () | 3294..3437 | + | 144 | Protein_4 | transposase | - |
| HV084_RS24565 () | 4189..6381 | + | 2193 | WP_094169335.1 | 1,4-alpha-glucan branching enzyme | - |
| HV084_RS24570 () | 6511..7794 | + | 1284 | WP_032690514.1 | glucose-1-phosphate adenylyltransferase | - |
| HV084_RS24575 () | 7884..9317 | + | 1434 | WP_040190721.1 | glycogen synthase GlgA | - |
| HV084_RS24580 () | 9336..11783 | + | 2448 | WP_094169334.1 | glycogen phosphorylase | - |
| HV084_RS24585 () | 11888..13531 | + | 1644 | WP_032743938.1 | phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) | - |
| HV084_RS24590 () | 13625..14521 | - | 897 | Protein_10 | IS3 family transposase ISEhe3 | Transposase |
| HV084_RS24595 () | 14531..15682 | - | 1152 | WP_048242354.1 | IS30 family transposase IS30H | Transposase |
| HV084_RS24600 () | 15770..17110 | - | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| HV084_RS24605 () | 17341..17583 | - | 243 | Protein_13 | IS3 family transposase ISEhe3 | Transposase |
| HV084_RS24610 () | 17721..18290 | + | 570 | WP_040190629.1 | helix-turn-helix transcriptional regulator | - |
| HV084_RS24615 () | 18374..19447 | - | 1074 | WP_075262229.1 | oligosaccharide MFS transporter | - |
| HV084_RS24620 () | 19749..20753 | - | 1005 | WP_117273198.1 | IS110 family transposase IS4321R | Transposase |
| HV084_RS24625 () | 20832..21389 | - | 558 | WP_003100847.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| HV084_RS24630 () | 21383..21754 | - | 372 | WP_003100853.1 | hypothetical protein | - |
| HV084_RS24635 () | 21751..22251 | - | 501 | WP_003100856.1 | hypothetical protein | - |
| HV084_RS24640 () | 22248..22574 | - | 327 | WP_003100858.1 | hypothetical protein | - |
| HV084_RS24645 () | 22829..23185 | - | 357 | WP_000215515.1 | cupin domain-containing protein | - |
| HV084_RS24650 () | 23175..23576 | - | 402 | WP_001293886.1 | DUF86 domain-containing protein | - |
| HV084_RS24655 () | 23573..23863 | - | 291 | WP_001247892.1 | nucleotidyltransferase | - |
| HV084_RS24660 () | 24022..26796 | + | 2775 | Protein_24 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| HV084_RS24665 () | 26862..27566 | + | 705 | WP_047389788.1 | IS6 family transposase IS26 | Transposase |
| HV084_RS24670 () | 27893..28393 | + | 501 | WP_001752509.1 | non-heme ferritin-like protein | - |
| HV084_RS24675 () | 28512..29740 | + | 1229 | WP_148116659.1 | IS3 family transposase ISEc27 | Transposase |
| HV084_RS24680 () | 30046..30555 | - | 510 | Protein_28 | IS5 family transposase ISKpn26 | Transposase |
| HV084_RS24685 () | 30626..31713 | + | 1088 | WP_088569307.1 | IS3 family transposase ISKpn20 | Transposase |
| HV084_RS24690 () | 31751..32227 | - | 477 | Protein_30 | IS5 family transposase ISKpn26 | Transposase |
| HV084_RS24695 () | 32505..32786 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HV084_RS24700 () | 32767..33096 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV084_RS24705 () | 33515..34291 | - | 777 | Protein_33 | IS110 family transposase IS4321R | Transposase |
| HV084_RS24710 () | 34356..35060 | + | 705 | WP_047389788.1 | IS6 family transposase IS26 | Transposase |
| HV084_RS24715 () | 35107..35763 | + | 657 | Protein_35 | arsenite efflux transporter ATPase subunit ArsA | - |
| HV084_RS24720 () | 35812..37101 | + | 1290 | WP_000922630.1 | arsenite efflux transporter membrane subunit ArsB | - |
| HV084_RS24725 () | 37114..37539 | + | 426 | WP_000065758.1 | glutaredoxin-dependent arsenate reductase | - |
| HV084_RS24730 () | 37570..37974 | - | 405 | WP_004118313.1 | arsenic transporter ATPase | - |
| HV084_RS24735 () | 37983..38555 | - | 573 | WP_001556711.1 | Tn3 family transposase ISEc63 | Transposase |
| HV084_RS24740 () | 38719..41727 | + | 3009 | WP_136374471.1 | Tn3 family transposase ISEc63 | Transposase |
| HV084_RS24745 () | 41889..42428 | - | 540 | WP_004099036.1 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| HV084_RS24750 () | 42430..42873 | - | 444 | WP_004099035.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| HV084_RS24755 () | 42998..44029 | + | 1032 | WP_032425611.1 | IS630 family transposase ISEc33 | Transposase |
| HV084_RS24760 () | 44175..45050 | - | 876 | WP_011191349.1 | LysR family transcriptional regulator | - |
| HV084_RS24765 () | 45279..46388 | + | 1110 | Protein_45 | alpha/beta fold hydrolase | - |
| HV084_RS24770 () | 46712..46933 | - | 222 | Protein_46 | IS1 family transposase IS1A | Transposase |
| HV084_RS24775 () | 47388..48740 | - | 1353 | WP_036983243.1 | hypothetical protein | - |
| HV084_RS24780 () | 48923..49138 | - | 216 | Protein_48 | HigA family addiction module antidote protein | - |
| HV084_RS24785 () | 49414..49767 | + | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| HV084_RS24790 () | 49815..50177 | + | 363 | WP_000783215.1 | arsenite efflux transporter metallochaperone ArsD | - |
| HV084_RS24795 () | 50195..51301 | + | 1107 | Protein_51 | arsenite efflux transporter ATPase subunit ArsA | - |
| HV084_RS24800 () | 51367..52071 | + | 705 | WP_047389788.1 | IS6 family transposase IS26 | Transposase |
| HV084_RS24805 () | 52123..52869 | + | 747 | Protein_53 | IS110 family transposase IS4321 | Transposase |
| HV084_RS24810 () | 53147..53467 | + | 321 | Protein_54 | conjugal transfer protein TrbF | - |
| HV084_RS24815 () | 53464..54513 | + | 1050 | WP_011191356.1 | P-type conjugative transfer protein TrbG | - |
| HV084_RS24820 () | 54510..55730 | + | 1221 | WP_011191355.1 | Type IV secretion system protein virB10 | VF |
| HV084_RS24825 () | 55733..55969 | + | 237 | WP_026227538.1 | DUF2274 domain-containing protein | - |
| HV084_RS24830 () | 55966..56862 | - | 897 | WP_011191354.1 | LysR family transcriptional regulator | - |
| HV084_RS24835 () | 57119..57652 | + | 534 | WP_004357616.1 | MarR family transcriptional regulator | - |
| HV084_RS24840 () | 57679..58638 | + | 960 | WP_004099025.1 | YeeE/YedE family protein | - |
| HV084_RS24845 () | 58677..59063 | - | 387 | WP_004099026.1 | hypothetical protein | - |
| HV084_RS24850 () | 59334..59822 | + | 489 | WP_004099027.1 | DUF417 family protein | - |
| HV084_RS24855 () | 59881..60063 | + | 183 | WP_004357657.1 | hypothetical protein | - |
| HV084_RS24860 () | 60380..60874 | + | 495 | WP_004099028.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| HV084_RS24865 () | 61271..62293 | - | 1023 | WP_004099029.1 | Zinc-type alcohol dehydrogenase-like protein | VF |
| HV084_RS24870 () | 62296..62889 | - | 594 | WP_025760400.1 | Peptide methionine sulfoxide reductase MsrA | VF |
| HV084_RS24875 () | 62892..64124 | - | 1233 | WP_004357650.1 | bifunctional alpha/beta hydrolase/OsmC family protein | - |
| HV084_RS24880 () | 64353..65228 | + | 876 | WP_011191349.1 | LysR family transcriptional regulator | - |
| HV084_RS24885 () | 65375..65818 | + | 444 | WP_004099035.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| HV084_RS24890 () | 65820..66356 | + | 537 | Protein_70 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| HV084_RS24895 () | 66492..67196 | + | 705 | WP_004099038.1 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| HV084_RS24900 () | 67193..68161 | + | 969 | WP_002118270.1 | magnesium and cobalt transport protein CorA | - |
| HV084_RS24905 () | 68253..68825 | + | 573 | WP_047722653.1 | hypothetical protein | - |
| HV084_RS24910 () | 68913..69362 | + | 450 | WP_004099042.1 | hypothetical protein | - |
| HV084_RS24915 () | 69469..69870 | + | 402 | WP_004099044.1 | hypothetical protein | - |
| HV084_RS24920 () | 69901..70125 | - | 225 | Protein_76 | MFS transporter | - |
| HV084_RS24925 () | 70446..70667 | - | 222 | Protein_77 | IS1 family transposase IS1A | Transposase |
| HV084_RS24930 () | 70775..71380 | - | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| HV084_RS24935 () | 71436..72140 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HV084_RS24940 () | 72199..72450 | + | 252 | WP_001515736.1 | hypothetical protein | - |
| HV084_RS24945 () | 72564..73709 | + | 1146 | WP_001325018.1 | ABC transporter permease | - |
| HV084_RS24950 () | 73715..74506 | + | 792 | WP_001325019.1 | putative ribonucleotide transport ATP-binding protein mkl | VF |
| HV084_RS24955 () | 74508..75446 | + | 939 | WP_000449980.1 | MCE family protein | - |
| HV084_RS24960 () | 75446..76087 | + | 642 | WP_000948259.1 | membrane integrity-associated transporter subunit PqiC | - |
| HV084_RS24965 () | 76435..77712 | + | 1278 | WP_001515737.1 | serine dehydratase subunit alpha family protein | - |
| HV084_RS24970 () | 77794..78312 | + | 519 | Protein_86 | PLP-dependent transferase | - |
| HV084_RS24975 () | 78369..79066 | + | 698 | Protein_87 | IS1 family transposase IS1R | Transposase |
| HV084_RS24980 () | 79081..79661 | - | 581 | Protein_88 | IS3 family transposase IS1351 | Transposase |
| HV084_RS24985 () | 79862..80557 | - | 696 | WP_032736820.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HV084_RS24990 () | 80572..80778 | - | 207 | WP_032736819.1 | hypothetical protein | - |
| HV084_RS24995 () | 81435..82439 | - | 1005 | WP_117273198.1 | IS110 family transposase IS4321R | Transposase |
| HV084_RS25000 () | 82613..83212 | - | 600 | WP_032736817.1 | GNAT family N-acetyltransferase | - |
| HV084_RS25005 () | 83478..84431 | + | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| HV084_RS25010 () | 85022..85531 | + | 510 | WP_050483874.1 | sigma-70 family RNA polymerase sigma factor | - |
| HV084_RS25015 () | 85688..86689 | + | 1002 | WP_094169444.1 | permease | - |
| HV084_RS25020 () | 86703..86933 | + | 231 | WP_021314637.1 | thioredoxin family protein | - |
| HV084_RS25025 () | 87211..87414 | - | 204 | WP_021314636.1 | hypothetical protein | - |
| HV084_RS25030 () | 87496..88323 | - | 828 | WP_032430841.1 | universal stress protein | - |
| HV084_RS25035 () | 88341..89819 | - | 1479 | WP_022652309.1 | SulP family inorganic anion transporter | - |
| HV084_RS25040 () | 90326..91348 | + | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| HV084_RS25045 () | 91640..91947 | - | 308 | Protein_101 | IS1 family transposase | - |
| HV084_RS25050 () | 92424..93164 | + | 741 | WP_022652310.1 | site-specific integrase | - |
| HV084_RS25055 () | 93490..94479 | - | 990 | WP_022652311.1 | RepB family plasmid replication initiator protein | - |
| HV084_RS25060 () | 95335..95604 | + | 270 | WP_022652312.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HV084_RS25065 () | 95608..96138 | + | 531 | WP_022652313.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HV084_RS25070 () | 96270..97163 | + | 894 | WP_161348953.1 | IS5 family transposase IS5D | Transposase |
| HV084_RS25075 () | 97304..97780 | - | 477 | Protein_107 | IS3 family transposase ISEhe3 | Transposase |
| HV084_RS25080 () | 97861..98163 | - | 303 | Protein_108 | group II intron reverse transcriptase/maturase | - |
| HV084_RS25090 () | 99362..100570 | - | 1209 | Protein_110 | group II intron reverse transcriptase/maturase | - |
| HV084_RS25095 () | 101243..101672 | - | 430 | Protein_111 | IS3 family transposase | - |
| HV084_RS25100 () | 101736..102887 | + | 1152 | WP_022652315.1 | IS30 family transposase IS30D | Transposase |
| HV084_RS25105 () | 102920..104260 | - | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| HV084_RS25110 () | 104491..104733 | - | 243 | Protein_114 | IS3 family transposase ISEhe3 | Transposase |
| HV084_RS25115 () | 105104..106270 | + | 1167 | WP_022652317.1 | plasmid-partitioning protein SopA | - |
| HV084_RS25120 () | 106270..107235 | + | 966 | WP_094169339.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HV084_RS25125 () | 107968..109010 | - | 1043 | Protein_117 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HV084_RS25130 () | 109264..111402 | + | 2139 | WP_022652236.1 | hypothetical protein | - |
| HV084_RS25135 () | 111736..113139 | + | 1404 | WP_072200700.1 | DNA cytosine methyltransferase | - |
| HV084_RS25140 () | 113173..114387 | - | 1215 | WP_176443283.1 | type II site-specific deoxyribonuclease | - |
| HV084_RS25150 () | 115860..117862 | - | 2003 | Protein_122 | tyrosine-type recombinase/integrase | - |
| HV084_RS25155 () | 117846..118850 | - | 1005 | Protein_123 | tyrosine-type recombinase/integrase | - |
| HV084_RS25160 () | 118924..119151 | - | 228 | Protein_124 | DNA polymerase V subunit UmuC | - |
| HV084_RS25165 () | 119151..119573 | - | 423 | WP_022652242.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV084_RS25170 () | 119753..120424 | - | 672 | WP_022652243.1 | SOS response-associated peptidase family protein | - |
| HV084_RS25175 () | 120784..121461 | + | 678 | WP_022652244.1 | DNA methylase | - |
| HV084_RS25180 () | 121461..121682 | + | 222 | WP_022652245.1 | hypothetical protein | - |
| HV084_RS25185 () | 121693..122112 | + | 420 | WP_094169336.1 | DUF1380 domain-containing protein | - |
| HV084_RS25190 () | 122166..122945 | + | 780 | WP_032430832.1 | hypothetical protein | - |
| HV084_RS25195 () | 123012..123215 | - | 204 | WP_042889371.1 | hypothetical protein | - |
| HV084_RS25200 () | 123352..123858 | + | 507 | WP_015062672.1 | antirestriction protein ArdA | - |
| HV084_RS25205 () | 123901..124092 | + | 192 | WP_022652248.1 | hypothetical protein | - |
| HV084_RS25210 () | 124284..124538 | + | 255 | WP_072200699.1 | DNA polymerase III subunit theta | - |
| HV084_RS25215 () | 124573..124890 | + | 318 | WP_032430831.1 | hypothetical protein | - |
| HV084_RS25220 () | 125013..125234 | - | 222 | WP_015062665.1 | hypothetical protein | - |
| HV084_RS25225 () | 125565..126119 | + | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| HV084_RS25230 () | 126172..126414 | + | 243 | WP_032430848.1 | DUF905 domain-containing protein | - |
| HV084_RS25235 () | 126485..128518 | + | 2034 | Protein_139 | ParB/RepB/Spo0J family partition protein | - |
| HV084_RS25240 () | 128559..128993 | + | 435 | WP_086538015.1 | conjugation system SOS inhibitor PsiB | - |
| HV084_RS25245 () | 128990..129718 | + | 729 | WP_032430829.1 | plasmid SOS inhibition protein A | - |
| HV084_RS25250 () | 129715..130068 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| HV084_RS25255 () | 130422..130796 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| HV084_RS25260 () | 131522..131926 | + | 405 | WP_032430828.1 | hypothetical protein | - |
| HV084_RS25265 () | 131983..132330 | + | 348 | WP_032430827.1 | hypothetical protein | - |
| HV084_RS25270 () | 132425..132571 | + | 147 | WP_001159045.1 | hypothetical protein | - |
| HV084_RS25275 () | 132618..133451 | + | 834 | WP_032430826.1 | type I restriction-modification system subunit M | - |
| HV084_RS25280 () | 134098..134628 | + | 531 | WP_032430825.1 | antirestriction protein | - |
| HV084_RS25285 () | 134639..135094 | - | 456 | WP_032430824.1 | hypothetical protein | VF |
| HV084_RS25290 () | 135563..135946 | + | 384 | WP_015062650.1 | relaxosome protein TraM | - |
| HV084_RS25295 () | 136243..136692 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| HV084_RS25300 () | 136898..137131 | + | 234 | WP_032430823.1 | TraY domain-containing protein | - |
| HV084_RS25305 () | 137249..137608 | + | 360 | WP_032430822.1 | type IV conjugative transfer system pilin TraA | - |
| HV084_RS25310 () | 137610..137915 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| HV084_RS25315 () | 137935..138498 | + | 564 | WP_032430821.1 | type IV conjugative transfer system protein TraE | - |
| HV084_RS25320 () | 138488..139228 | + | 741 | WP_032430820.1 | type-F conjugative transfer system secretin TraK | - |
| HV084_RS25325 () | 139215..140576 | + | 1362 | WP_032430819.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HV084_RS25330 () | 140686..140905 | + | 220 | Protein_158 | TraR/DksA C4-type zinc finger protein | - |
| HV084_RS25335 () | 140918..141370 | + | 453 | WP_032430818.1 | hypothetical protein | - |
| HV084_RS25340 () | 141388..141987 | + | 600 | WP_047715683.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HV084_RS25345 () | 141998..144589 | + | 2592 | WP_032430816.1 | type IV secretion system protein TraC | - |
| HV084_RS25350 () | 144586..145050 | + | 465 | WP_032430815.1 | type-F conjugative transfer system protein TrbI | - |
| HV084_RS25355 () | 145050..145685 | + | 636 | WP_032430814.1 | type-F conjugative transfer system protein TraW | - |
| HV084_RS25360 () | 145682..146677 | + | 996 | WP_032430813.1 | conjugal transfer pilus assembly protein TraU | - |
| HV084_RS25365 () | 146688..147056 | + | 369 | WP_032430812.1 | hypothetical protein | - |
| HV084_RS25370 () | 147053..147667 | + | 615 | WP_032430811.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HV084_RS25375 () | 147664..149517 | + | 1854 | WP_032430810.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HV084_RS25380 () | 149514..150293 | + | 780 | WP_071446640.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HV084_RS25385 () | 150319..150930 | + | 612 | WP_032430808.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HV084_RS25390 () | 150930..152291 | + | 1362 | WP_032430807.1 | F-type conjugal transfer protein TraH | - |
| HV084_RS25395 () | 152293..155190 | + | 2898 | WP_047715678.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HV084_RS25400 () | 155202..155762 | + | 561 | WP_047715676.1 | hypothetical protein | - |
| HV084_RS25405 () | 155938..156675 | + | 738 | WP_047715675.1 | complement resistance protein TraT | - |
| HV084_RS25410 () | 156826..159060 | + | 2235 | WP_047715674.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV084_RS25415 () | 159060..164363 | + | 5304 | WP_047715673.1 | Multifunctional conjugation protein TraI | Relaxase |
| HV084_RS25420 () | 164382..164948 | + | 567 | WP_047715672.1 | DUF2726 domain-containing protein | - |
| HV084_RS25425 () | 164945..165676 | + | 732 | WP_071446724.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HV084_RS25430 () | 165718..166071 | + | 354 | WP_047715670.1 | hypothetical protein | - |
| HV084_RS25435 () | 166220..166783 | + | 564 | WP_047715669.1 | Phospholipase D | VF |
| HV084_RS25440 () | 166915..167157 | + | 243 | WP_000078032.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|