MGE detailed information
MGE type: Conjugative plasmid MGE length: 119062 bp
Accession: NZ_CP056547 Location: 1..119062 Organism: Citrobacter sp. RHBSTW-00424 Replicon: plasmid pRHBSTW-00424_2
Accession: NZ_CP056547 Location: 1..119062 Organism: Citrobacter sp. RHBSTW-00424 Replicon: plasmid pRHBSTW-00424_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV191_RS26155 () | 1..942 | + | 942 | WP_165690017.1 | replication initiator protein RepA | - |
| HV191_RS26160 () | 2099..2796 | - | 698 | Protein_2 | IS1 family transposase IS1G | Transposase |
| HV191_RS26165 () | 3267..3962 | - | 696 | WP_058670805.1 | L-ribulose-5-phosphate 4-epimerase | - |
| HV191_RS26170 () | 4402..5211 | + | 810 | WP_058670806.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| HV191_RS26175 () | 5488..6492 | + | 1005 | WP_058670807.1 | substrate-binding domain-containing protein | - |
| HV191_RS26180 () | 6560..8074 | + | 1515 | WP_058670808.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HV191_RS26185 () | 8067..9053 | + | 987 | WP_058670809.1 | ABC transporter permease | - |
| HV191_RS26190 () | 9067..10113 | + | 1047 | WP_058670810.1 | ABC transporter permease | - |
| HV191_RS26195 () | 10113..11006 | + | 894 | WP_058670811.1 | L-ribulose-5-phosphate 3-epimerase | - |
| HV191_RS26200 () | 11003..12481 | + | 1479 | WP_058670812.1 | carbohydrate kinase | - |
| HV191_RS26205 () | 12517..12673 | - | 157 | Protein_11 | IS1 family transposase | - |
| HV191_RS26210 () | 12763..13743 | - | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| HV191_RS26215 () | 14185..14856 | - | 672 | WP_047721798.1 | hypothetical protein | VF |
| HV191_RS26220 () | 14853..15296 | - | 444 | WP_040219247.1 | ribose 5-phosphate isomerase B | - |
| HV191_RS26225 () | 15374..16963 | - | 1590 | WP_086626394.1 | PTS transporter subunit EIIC | - |
| HV191_RS26230 () | 17356..18246 | + | 891 | WP_040219243.1 | SIS domain-containing protein | - |
| HV191_RS26235 () | 18247..18480 | + | 234 | Protein_17 | hypothetical protein | - |
| HV191_RS26240 () | 18715..18999 | + | 285 | WP_077257426.1 | hypothetical protein | - |
| HV191_RS26245 () | 19073..19561 | - | 489 | WP_058672086.1 | hypothetical protein | - |
| HV191_RS26250 () | 19818..20933 | + | 1116 | WP_058672087.1 | DNA-binding protein | - |
| HV191_RS26255 () | 20926..21780 | + | 855 | WP_040219240.1 | 3'-5' exonuclease | - |
| HV191_RS26260 () | 21833..22228 | + | 396 | WP_040219261.1 | hypothetical protein | - |
| HV191_RS26265 () | 22225..22836 | + | 612 | WP_015493086.1 | DUF2913 family protein | - |
| HV191_RS26270 () | 22833..23783 | - | 951 | WP_040219234.1 | hypothetical protein | VF |
| HV191_RS26275 () | 24153..24857 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HV191_RS26280 () | 25184..25684 | + | 501 | WP_001752509.1 | non-heme ferritin-like protein | - |
| HV191_RS26285 () | 25803..27031 | + | 1229 | WP_148116659.1 | IS3 family transposase ISEc27 | Transposase |
| HV191_RS26290 () | 27337..28317 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| HV191_RS26295 () | 28595..28876 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HV191_RS26300 () | 28857..29186 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV191_RS26305 () | 29605..30558 | - | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| HV191_RS26310 () | 30623..31150 | - | 528 | WP_022652301.1 | hypothetical protein | - |
| HV191_RS26315 () | 31179..31889 | - | 711 | WP_022652302.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HV191_RS26320 () | 31891..33096 | - | 1206 | WP_022652303.1 | ABC transporter permease | - |
| HV191_RS26325 () | 33093..34244 | - | 1152 | WP_022652304.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HV191_RS26330 () | 34241..34849 | - | 609 | WP_004393990.1 | TetR/AcrR family transcriptional regulator | - |
| HV191_RS26335 () | 35037..35990 | + | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| HV191_RS26340 () | 36581..37090 | + | 510 | WP_050483874.1 | sigma-70 family RNA polymerase sigma factor | - |
| HV191_RS26345 () | 37247..38248 | + | 1002 | Protein_39 | permease | - |
| HV191_RS26350 () | 38262..38492 | + | 231 | WP_021314637.1 | thioredoxin family protein | - |
| HV191_RS26355 () | 38770..38973 | - | 204 | WP_021314636.1 | hypothetical protein | - |
| HV191_RS26360 () | 39055..39882 | - | 828 | WP_032430841.1 | universal stress protein | - |
| HV191_RS26365 () | 39900..41378 | - | 1479 | WP_022652309.1 | SulP family inorganic anion transporter | - |
| HV191_RS26370 () | 41885..42907 | + | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| HV191_RS26375 () | 43199..43506 | - | 308 | Protein_45 | IS1 family transposase | - |
| HV191_RS26380 () | 43983..44723 | + | 741 | WP_022652310.1 | site-specific integrase | - |
| HV191_RS26385 () | 45049..46038 | - | 990 | WP_022652311.1 | RepB family plasmid replication initiator protein | - |
| HV191_RS26390 () | 46894..47163 | + | 270 | WP_022652312.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| HV191_RS26395 () | 47167..47697 | + | 531 | WP_022652313.1 | GNAT family N-acetyltransferase | Toxin Detail |
| HV191_RS26400 () | 47829..48722 | + | 894 | WP_176311857.1 | IS5 family transposase IS5D | Transposase |
| HV191_RS26405 () | 48863..49339 | - | 477 | Protein_51 | IS3 family transposase ISEhe3 | Transposase |
| HV191_RS26410 () | 49420..50928 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HV191_RS26415 () | 51601..52030 | - | 430 | Protein_53 | IS3 family transposase | - |
| HV191_RS26420 () | 52094..53245 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| HV191_RS26425 () | 53278..54618 | - | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| HV191_RS26430 () | 54849..55091 | - | 243 | Protein_56 | IS3 family transposase ISEhe3 | Transposase |
| HV191_RS26435 () | 55462..56628 | + | 1167 | WP_022652317.1 | plasmid-partitioning protein SopA | - |
| HV191_RS26440 () | 56628..57593 | + | 966 | WP_022652318.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HV191_RS26445 () | 58326..59368 | - | 1043 | Protein_59 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HV191_RS26450 () | 59622..61760 | + | 2139 | WP_022652236.1 | hypothetical protein | - |
| HV191_RS26455 () | 62094..63497 | + | 1404 | WP_072200700.1 | DNA cytosine methyltransferase | - |
| HV191_RS26460 () | 63531..64745 | - | 1215 | WP_022652238.1 | type II site-specific deoxyribonuclease | - |
| HV191_RS26465 () | 64894..67020 | - | 2127 | WP_022652239.1 | tyrosine-type recombinase/integrase | - |
| HV191_RS26470 () | 67004..68008 | - | 1005 | Protein_64 | tyrosine-type recombinase/integrase | - |
| HV191_RS26475 () | 68082..68309 | - | 228 | Protein_65 | DNA polymerase V subunit UmuC | - |
| HV191_RS26480 () | 68309..68731 | - | 423 | WP_022652242.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HV191_RS26485 () | 68911..69582 | - | 672 | WP_022652243.1 | SOS response-associated peptidase family protein | - |
| HV191_RS26490 () | 69942..70619 | + | 678 | WP_022652244.1 | DNA methylase | - |
| HV191_RS26495 () | 70619..70840 | + | 222 | WP_022652245.1 | hypothetical protein | - |
| HV191_RS26500 () | 70851..71270 | + | 420 | WP_016479994.1 | DUF1380 domain-containing protein | - |
| HV191_RS26505 () | 71324..72103 | + | 780 | WP_032430832.1 | hypothetical protein | - |
| HV191_RS26510 () | 72170..72373 | - | 204 | WP_042889371.1 | hypothetical protein | - |
| HV191_RS26515 () | 72510..73016 | + | 507 | WP_015062672.1 | antirestriction protein ArdA | - |
| HV191_RS26520 () | 73059..73250 | + | 192 | WP_022652248.1 | hypothetical protein | - |
| HV191_RS26525 () | 73442..73696 | + | 255 | WP_072200699.1 | DNA polymerase III subunit theta | - |
| HV191_RS26530 () | 73731..74048 | + | 318 | WP_032430831.1 | hypothetical protein | - |
| HV191_RS26535 () | 74171..74392 | - | 222 | WP_015062665.1 | hypothetical protein | - |
| HV191_RS26540 () | 74723..75277 | + | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| HV191_RS26545 () | 75330..75572 | + | 243 | WP_032430848.1 | DUF905 domain-containing protein | - |
| HV191_RS26550 () | 75643..77676 | + | 2034 | Protein_80 | ParB/RepB/Spo0J family partition protein | - |
| HV191_RS26555 () | 77717..78151 | + | 435 | WP_086538015.1 | conjugation system SOS inhibitor PsiB | - |
| HV191_RS26560 () | 78148..78876 | + | 729 | WP_032430829.1 | plasmid SOS inhibition protein A | - |
| HV191_RS26565 () | 78873..79226 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| HV191_RS26570 () | 79580..79954 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| HV191_RS26575 () | 80680..81084 | + | 405 | WP_032430828.1 | hypothetical protein | - |
| HV191_RS26580 () | 81141..81488 | + | 348 | WP_032430827.1 | hypothetical protein | - |
| HV191_RS26585 () | 81583..81729 | + | 147 | WP_001159045.1 | hypothetical protein | - |
| HV191_RS26590 () | 81776..82609 | + | 834 | WP_032430826.1 | type I restriction-modification system subunit M | - |
| HV191_RS26595 () | 83256..83786 | + | 531 | WP_032430825.1 | antirestriction protein | - |
| HV191_RS26600 () | 83797..84252 | - | 456 | WP_032430824.1 | hypothetical protein | VF |
| HV191_RS26605 () | 84721..85104 | + | 384 | WP_015062650.1 | relaxosome protein TraM | - |
| HV191_RS26610 () | 85401..85850 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| HV191_RS26615 () | 86056..86289 | + | 234 | WP_032430823.1 | TraY domain-containing protein | - |
| HV191_RS26620 () | 86407..86766 | + | 360 | WP_032430822.1 | type IV conjugative transfer system pilin TraA | - |
| HV191_RS26625 () | 86768..87073 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| HV191_RS26630 () | 87093..87656 | + | 564 | WP_032430821.1 | type IV conjugative transfer system protein TraE | - |
| HV191_RS26635 () | 87646..88386 | + | 741 | WP_032430820.1 | type-F conjugative transfer system secretin TraK | - |
| HV191_RS26640 () | 88373..89734 | + | 1362 | WP_032430819.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HV191_RS26645 () | 89844..90063 | + | 220 | Protein_99 | TraR/DksA C4-type zinc finger protein | - |
| HV191_RS26650 () | 90076..90528 | + | 453 | WP_032430818.1 | hypothetical protein | - |
| HV191_RS26655 () | 90546..91145 | + | 600 | WP_047715683.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HV191_RS26660 () | 91156..93747 | + | 2592 | WP_032430816.1 | type IV secretion system protein TraC | - |
| HV191_RS26665 () | 93744..94208 | + | 465 | WP_032430815.1 | type-F conjugative transfer system protein TrbI | - |
| HV191_RS26670 () | 94208..94843 | + | 636 | WP_032430814.1 | type-F conjugative transfer system protein TraW | - |
| HV191_RS26675 () | 94840..95835 | + | 996 | WP_032430813.1 | conjugal transfer pilus assembly protein TraU | - |
| HV191_RS26680 () | 95846..96214 | + | 369 | WP_032430812.1 | hypothetical protein | - |
| HV191_RS26685 () | 96211..96825 | + | 615 | WP_032430811.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HV191_RS26690 () | 96822..97337 | + | 516 | Protein_108 | conjugal transfer protein TraN | - |
| HV191_RS26695 () | 97579..97962 | + | 384 | WP_001201739.1 | IS66 family transposase IS682 | Transposase |
| HV191_RS26700 () | 97959..98306 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| HV191_RS26705 () | 98356..99891 | + | 1536 | WP_016239903.1 | IS66 family transposase ISSgsp1 | Transposase |
| HV191_RS26710 () | 99990..101120 | + | 1131 | Protein_112 | conjugal transfer protein TraN | - |
| HV191_RS26715 () | 101117..101896 | + | 780 | WP_071446640.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HV191_RS26720 () | 101922..102533 | + | 612 | WP_032430808.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HV191_RS26725 () | 102533..103894 | + | 1362 | WP_032430807.1 | F-type conjugal transfer protein TraH | - |
| HV191_RS26730 () | 103896..106793 | + | 2898 | WP_047715678.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HV191_RS26735 () | 106805..107365 | + | 561 | WP_047715676.1 | hypothetical protein | - |
| HV191_RS26740 () | 107541..108278 | + | 738 | WP_047715675.1 | complement resistance protein TraT | - |
| HV191_RS26745 () | 108429..110663 | + | 2235 | WP_047715674.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV191_RS26750 () | 110663..115966 | + | 5304 | WP_047715673.1 | Multifunctional conjugation protein TraI | Relaxase |
| HV191_RS26755 () | 115985..116551 | + | 567 | WP_047715672.1 | DUF2726 domain-containing protein | - |
| HV191_RS26760 () | 116548..117279 | + | 732 | WP_181521162.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HV191_RS26765 () | 117321..117674 | + | 354 | WP_047715670.1 | hypothetical protein | - |
| HV191_RS26770 () | 117823..118386 | + | 564 | WP_047715669.1 | Phospholipase D | VF |
| HV191_RS26775 () | 118518..118760 | + | 243 | WP_000078032.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|