MGE detailed information
MGE type: Prophage MGE length: 48452 bp
Accession: NZ_CP055599 Location: 935838..984289 Organism: Escherichia fergusonii strain RHB41-C23 Replicon: chromosome
Accession: NZ_CP055599 Location: 935838..984289 Organism: Escherichia fergusonii strain RHB41-C23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV014_RS04520 () | 932230..933081 | + | 852 | WP_000218044.1 | protein deglycase HchA | - |
| HV014_RS04525 () | 934349..934930 | - | 582 | WP_181199092.1 | tail fiber assembly protein | - |
| HV014_RS04530 () | 934939..935841 | - | 903 | WP_181199093.1 | macro domain-containing protein | - |
| HV014_RS04535 () | 935838..936752 | - | 915 | WP_181199375.1 | phage tail protein | - |
| HV014_RS04540 () | 937398..938960 | - | 1563 | Protein_895 | prophage tail fiber N-terminal domain-containing protein | - |
| HV014_RS04545 () | 939025..939624 | - | 600 | WP_181198712.1 | Outer membrane protein X | VF |
| HV014_RS04550 () | 939692..943180 | - | 3489 | WP_181199094.1 | host specificity protein J | - |
| HV014_RS04555 () | 943241..943873 | - | 633 | WP_000090891.1 | tail assembly protein | - |
| HV014_RS04560 () | 943810..944553 | - | 744 | WP_072274165.1 | C40 family peptidase | - |
| HV014_RS04565 () | 944559..945257 | - | 699 | WP_021568068.1 | phage minor tail protein L | - |
| HV014_RS04570 () | 945257..945613 | - | 357 | WP_001330090.1 | phage tail protein | - |
| HV014_RS04575 () | 945591..948818 | - | 3228 | WP_024257906.1 | phage tail tape measure protein | - |
| HV014_RS04580 () | 948865..949143 | - | 279 | WP_181199095.1 | DUF4035 domain-containing protein | - |
| HV014_RS04585 () | 949167..949538 | - | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| HV014_RS04590 () | 949553..950257 | - | 705 | WP_000097533.1 | hypothetical protein | - |
| HV014_RS04595 () | 950317..950661 | - | 345 | WP_001209399.1 | DUF3168 domain-containing protein | - |
| HV014_RS04600 () | 950658..951104 | - | 447 | WP_000347790.1 | HK97 gp10 family phage protein | - |
| HV014_RS04605 () | 951104..951442 | - | 339 | WP_001147820.1 | phage head closure protein | - |
| HV014_RS04610 () | 951451..951756 | - | 306 | WP_000983037.1 | head-tail connector protein | - |
| HV014_RS04615 () | 951768..951956 | - | 189 | WP_000601355.1 | hypothetical protein | - |
| HV014_RS04620 () | 952007..953212 | - | 1206 | WP_000257522.1 | phage major capsid protein | - |
| HV014_RS04625 () | 953227..953877 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| HV014_RS04630 () | 953855..955096 | - | 1242 | WP_000466255.1 | phage portal protein | - |
| HV014_RS04635 () | 955096..955278 | - | 183 | WP_000478564.1 | hypothetical protein | - |
| HV014_RS04640 () | 955290..957047 | - | 1758 | WP_001140903.1 | terminase large subunit | - |
| HV014_RS04645 () | 957047..957529 | - | 483 | WP_001312917.1 | phage terminase small subunit P27 family | - |
| HV014_RS04650 () | 957677..958027 | - | 351 | WP_023155124.1 | HNH endonuclease | - |
| HV014_RS04655 () | 958166..958705 | + | 540 | WP_023155123.1 | YfbU family protein | - |
| HV014_RS04660 () | 959116..959385 | - | 270 | WP_023155120.1 | hypothetical protein | - |
| HV014_RS04665 () | 959393..960007 | - | 615 | WP_023155119.1 | glycoside hydrolase family 19 protein | - |
| HV014_RS04670 () | 960007..960288 | - | 282 | WP_023155118.1 | phage holin family protein | - |
| HV014_RS04675 () | 960275..960661 | - | 387 | WP_023155117.1 | phage holin family protein | - |
| HV014_RS04680 () | 960828..961688 | - | 861 | WP_048949149.1 | hypothetical protein | - |
| HV014_RS04685 () | 961822..962511 | - | 690 | WP_181199096.1 | antiterminator | - |
| HV014_RS04690 () | 962508..962867 | - | 360 | WP_089585352.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HV014_RS04695 () | 962880..963929 | - | 1050 | WP_048949148.1 | DUF968 domain-containing protein | - |
| HV014_RS04700 () | 963931..964209 | - | 279 | WP_024175747.1 | hypothetical protein | - |
| HV014_RS04705 () | 964506..964898 | - | 393 | WP_000737636.1 | hypothetical protein | - |
| HV014_RS04710 () | 965042..965197 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 965209..965267 | + | 59 | - | - | Antitoxin Detail |
| HV014_RS04715 () | 965435..966100 | - | 666 | WP_000150294.1 | epoxyqueuosine reductase QueH | - |
| HV014_RS04720 () | 966275..966700 | - | 426 | WP_097330215.1 | DUF977 family protein | - |
| HV014_RS04725 () | 966741..967811 | - | 1071 | WP_181199097.1 | phage replisome organizer | - |
| HV014_RS04730 () | 967883..968308 | - | 426 | WP_000693850.1 | Rha family transcriptional regulator | - |
| HV014_RS04735 () | 968305..968520 | - | 216 | WP_060615121.1 | transcriptional regulator | - |
| HV014_RS04740 () | 968570..969286 | + | 717 | WP_001394126.1 | helix-turn-helix domain-containing protein | - |
| HV014_RS04745 () | 969559..969714 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| HV014_RS04750 () | 969874..970092 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HV014_RS04755 () | 970660..970848 | + | 189 | WP_000854558.1 | cell division inhibition protein DicB | - |
| HV014_RS04760 () | 970845..971036 | + | 192 | WP_021579309.1 | DUF1482 family protein | - |
| HV014_RS04765 () | 971130..973571 | + | 2442 | WP_059332707.1 | exonuclease | - |
| HV014_RS04770 () | 973630..973833 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| HV014_RS04775 () | 973833..974858 | + | 1026 | WP_000533615.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HV014_RS04785 () | 975094..975891 | + | 798 | WP_000598930.1 | DgsA anti-repressor MtfA | - |
| HV014_RS04795 () | 976106..977056 | - | 951 | WP_181199098.1 | HTH-type transcriptional regulator Cbl | - |
| HV014_RS04800 () | 977158..978075 | - | 918 | WP_001011449.1 | nitrogen assimilation transcriptional regulator NAC | - |
| HV014_RS04810 () | 978642..978836 | + | 195 | Protein_946 | DUF4102 domain-containing protein | - |
| HV014_RS04815 () | 979497..979817 | - | 321 | WP_001013541.1 | hypothetical protein | - |
| HV014_RS04820 () | 979829..980287 | - | 459 | WP_125282644.1 | hypothetical protein | - |
| HV014_RS04825 () | 980702..981073 | - | 372 | WP_001252092.1 | hypothetical protein | - |
| HV014_RS04830 () | 981078..981528 | - | 451 | Protein_950 | DUF1311 domain-containing protein | - |
| HV014_RS04835 () | 981528..982199 | - | 672 | WP_181199376.1 | hypothetical protein | - |
| HV014_RS04840 () | 982422..982901 | - | 480 | WP_001284965.1 | Major exported protein | VF |
| HV014_RS04845 () | 982919..983365 | - | 447 | Protein_953 | hypothetical protein | VF |
| HV014_RS04850 () | 983364..983522 | + | 159 | Protein_954 | DcrB-related protein | - |
| HV014_RS04855 () | 983650..983817 | + | 168 | Protein_955 | ISAs1 family transposase ISEc1 | Transposase |
| HV014_RS04860 () | 983876..984208 | + | 333 | Protein_956 | hypothetical protein | - |
| HV014_RS04865 () | 984286..985740 | - | 1455 | WP_001016370.1 | AMP nucleosidase | - |
| HV014_RS04870 () | 985868..987172 | - | 1305 | WP_000378537.1 | shikimate transporter | - |
| HV014_RS04880 () | 987723..989192 | - | 1470 | WP_181199099.1 | EmmdR/YeeO family multidrug/toxin efflux MATE transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|