MGE detailed information
MGE type: Prophage MGE length: 53530 bp
Accession: NZ_CP055292 Location: 4231792..4285321 Organism: Shigella sonnei strain SE6-1 Replicon: chromosome
Accession: NZ_CP055292 Location: 4231792..4285321 Organism: Shigella sonnei strain SE6-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUX90_RS20110 () | 4228041..4230467 | - | 2427 | WP_000041535.1 | dimethyl sulfoxide reductase subunit A | - |
| HUX90_RS20115 () | 4230666..4230971 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| HUX90_RS20120 () | 4231079..4231789 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| HUX90_RS20125 () | 4231792..4232352 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| HUX90_RS20130 () | 4232387..4232728 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| HUX90_RS20135 () | 4232863..4233189 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| HUX90_RS20140 () | 4233395..4234609 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HUX90_RS20145 () | 4234621..4235640 | + | 1020 | WP_000836064.1 | Zn-dependent oxidoreductase | - |
| HUX90_RS20150 () | 4235698..4235808 | + | 111 | WP_021531328.1 | hypothetical protein | - |
| HUX90_RS20155 () | 4235828..4237108 | - | 1281 | WP_000876979.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HUX90_RS20160 () | 4237143..4237394 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| HUX90_RS20165 () | 4237467..4239938 | - | 2472 | WP_001515375.1 | exonuclease | - |
| HUX90_RS20170 () | 4240032..4240223 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HUX90_RS20175 () | 4240220..4240408 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HUX90_RS20180 () | 4240976..4241194 | - | 219 | WP_001171952.1 | hypothetical protein | - |
| HUX90_RS20185 () | 4241354..4241509 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HUX90_RS20190 () | 4241676..4242083 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HUX90_RS20195 () | 4242167..4242397 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HUX90_RS20200 () | 4242381..4242902 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| HUX90_RS20205 () | 4242883..4243848 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| HUX90_RS20210 () | 4243949..4244356 | + | 408 | Protein_3928 | hypothetical protein | - |
| HUX90_RS20215 () | 4244397..4244819 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| HUX90_RS20220 () | 4244816..4245172 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| HUX90_RS20225 () | 4245783..4246069 | + | 287 | Protein_3931 | hypothetical protein | - |
| HUX90_RS20230 () | 4246838..4248178 | + | 1341 | WP_000589013.1 | ISNCY family transposase ISCARN112 | Transposase |
| HUX90_RS20235 () | 4248615..4248947 | - | 333 | WP_001301033.1 | protein FlxA | - |
| HUX90_RS20240 () | 4249150..4249455 | - | 306 | WP_071593935.1 | hypothetical protein | - |
| HUX90_RS20245 () | 4249480..4249719 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HUX90_RS20250 () | 4249719..4250006 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HUX90_RS20255 () | 4250078..4250233 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HUX90_RS20260 () | 4250450..4250701 | + | 252 | WP_001463433.1 | hypothetical protein | - |
| HUX90_RS20265 () | 4250768..4251046 | + | 279 | WP_040091072.1 | hypothetical protein | - |
| HUX90_RS20270 () | 4251048..4252097 | + | 1050 | WP_016247238.1 | DUF968 domain-containing protein | - |
| HUX90_RS20275 () | 4252111..4252863 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HUX90_RS20280 () | 4253141..4253230 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HUX90_RS20285 () | 4253285..4253497 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HUX90_RS20290 () | 4253798..4254013 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HUX90_RS20295 () | 4254767..4254982 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HUX90_RS20300 () | 4254987..4255297 | + | 311 | Protein_3946 | DUF1327 domain-containing protein | - |
| HUX90_RS20305 () | 4255294..4255827 | + | 534 | WP_001092971.1 | lysozyme | - |
| HUX90_RS20310 () | 4255824..4256321 | + | 498 | WP_001071766.1 | DUF2514 domain-containing protein | - |
| HUX90_RS20315 () | 4256685..4256897 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HUX90_RS20320 () | 4256908..4257096 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| HUX90_RS20325 () | 4257099..4257164 | + | 66 | WP_122134696.1 | hypothetical protein | - |
| HUX90_RS20330 () | 4257169..4257399 | + | 231 | WP_000720962.1 | hypothetical protein | - |
| HUX90_RS20335 () | 4257571..4257744 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HUX90_RS20340 () | 4257896..4258306 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HUX90_RS20345 () | 4258364..4258597 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HUX90_RS20350 () | 4258986..4259531 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| HUX90_RS20355 () | 4259506..4261431 | + | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| HUX90_RS20360 () | 4261428..4261634 | + | 207 | WP_000198149.1 | gpW family protein | - |
| HUX90_RS20365 () | 4261631..4263232 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| HUX90_RS20370 () | 4263213..4264532 | + | 1320 | WP_000123225.1 | S49 family peptidase | - |
| HUX90_RS20375 () | 4264542..4264874 | + | 333 | WP_001299443.1 | head decoration protein | - |
| HUX90_RS20380 () | 4264930..4265955 | + | 1026 | WP_000063288.1 | major capsid protein | - |
| HUX90_RS20385 () | 4265995..4266393 | + | 399 | WP_000158854.1 | DNA-packaging protein FI | - |
| HUX90_RS20390 () | 4266405..4266758 | + | 354 | WP_000752996.1 | head-tail joining protein | - |
| HUX90_RS20395 () | 4266770..4267348 | + | 579 | WP_000975111.1 | phage tail protein | - |
| HUX90_RS20400 () | 4267345..4267740 | + | 396 | WP_106487122.1 | phage minor tail U family protein | - |
| HUX90_RS20405 () | 4267748..4268488 | + | 741 | WP_001360166.1 | phage tail protein | - |
| HUX90_RS20410 () | 4268504..4268926 | + | 423 | WP_000479206.1 | phage minor tail protein G | - |
| HUX90_RS20415 () | 4268908..4269342 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| HUX90_RS20420 () | 4269335..4271896 | + | 2562 | WP_053292699.1 | phage tail tape measure protein | - |
| HUX90_RS20425 () | 4271893..4272222 | + | 330 | WP_000847351.1 | phage tail protein | - |
| HUX90_RS20430 () | 4272222..4272920 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| HUX90_RS20435 () | 4272926..4273669 | + | 744 | WP_001484131.1 | C40 family peptidase | - |
| HUX90_RS20440 () | 4273606..4274208 | + | 603 | WP_000090849.1 | tail assembly protein | - |
| HUX90_RS20445 () | 4274269..4277748 | + | 3480 | WP_176527881.1 | host specificity protein J | - |
| HUX90_RS20450 () | 4277816..4278415 | + | 600 | WP_053292719.1 | hypothetical protein | VF |
| HUX90_RS20455 () | 4278480..4281440 | + | 2961 | WP_097405601.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HUX90_RS20460 () | 4281440..4282015 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| HUX90_RS20465 () | 4282113..4282703 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HUX90_RS20470 () | 4283020..4283253 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HUX90_RS20475 () | 4283322..4283435 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| HUX90_RS20480 () | 4284038..4285321 | + | 1284 | Protein_3982 | MHS family MFS transporter YdfJ | - |
| HUX90_RS20485 () | 4285410..4286870 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| HUX90_RS20490 () | 4286906..4287109 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HUX90_RS20495 () | 4287287..4287973 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| HUX90_RS20500 () | 4288062..4288808 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|