MGE detailed information
MGE type: Conjugative plasmid MGE length: 143918 bp
Accession: NZ_CP055249 Location: 1..143918 Organism: Citrobacter freundii strain ZY198 Replicon: plasmid pZY-2
Accession: NZ_CP055249 Location: 1..143918 Organism: Citrobacter freundii strain ZY198 Replicon: plasmid pZY-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTH18_RS24485 () | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| GTH18_RS24490 () | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| GTH18_RS24495 () | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| GTH18_RS24500 () | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| GTH18_RS24505 () | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| GTH18_RS24510 () | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| GTH18_RS24515 () | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| GTH18_RS24520 () | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| GTH18_RS24525 () | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| GTH18_RS24530 () | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| GTH18_RS24535 () | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| GTH18_RS24540 () | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| GTH18_RS24545 () | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| GTH18_RS24550 () | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| GTH18_RS24555 () | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| GTH18_RS24560 () | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| GTH18_RS24565 () | 12139..12327 | + | 189 | WP_001270411.1 | hypothetical protein | - |
| GTH18_RS24570 () | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| GTH18_RS24575 () | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| GTH18_RS24580 () | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| GTH18_RS24585 () | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| GTH18_RS24590 () | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GTH18_RS24595 () | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| GTH18_RS24600 () | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| GTH18_RS24605 () | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| GTH18_RS24610 () | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| GTH18_RS24615 () | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| GTH18_RS24620 () | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| GTH18_RS24625 () | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| GTH18_RS24630 () | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTH18_RS24635 () | 18944..19804 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| GTH18_RS24640 () | 19817..20110 | + | 294 | Protein_32 | tunicamycin resistance protein | - |
| GTH18_RS24645 () | 20173..20877 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| GTH18_RS24650 () | 20938..21774 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| GTH18_RS24655 () | 21774..22577 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| GTH18_RS24660 () | 22638..23453 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| GTH18_RS24665 () | 23760..24071 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| GTH18_RS24670 () | 24245..25030 | + | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| GTH18_RS24675 () | 25034..26215 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| GTH18_RS24680 () | 26264..26536 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| GTH18_RS24685 () | 26589..27224 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| GTH18_RS24690 () | 27316..27459 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| GTH18_RS24695 () | 27778..28155 | + | 378 | WP_001125905.1 | hypothetical protein | - |
| GTH18_RS24700 () | 28148..28429 | + | 282 | WP_000044824.1 | hypothetical protein | - |
| GTH18_RS24705 () | 28404..29078 | + | 675 | WP_000344151.1 | thymidylate kinase | - |
| GTH18_RS24710 () | 29146..29577 | + | 432 | WP_005507681.1 | hypothetical protein | - |
| GTH18_RS24715 () | 29583..29894 | + | 312 | WP_002210541.1 | hypothetical protein | - |
| GTH18_RS24720 () | 29903..30403 | + | 501 | WP_000647189.1 | hypothetical protein | - |
| GTH18_RS24725 () | 30407..31834 | + | 1428 | WP_000936896.1 | DNA cytosine methyltransferase | - |
| GTH18_RS24730 () | 31834..32490 | + | 657 | WP_000268551.1 | hypothetical protein | - |
| GTH18_RS24735 () | 32696..32914 | + | 219 | WP_000362482.1 | hypothetical protein | - |
| GTH18_RS24740 () | 33008..33625 | + | 618 | WP_000464631.1 | hypothetical protein | - |
| GTH18_RS24745 () | 33837..34136 | + | 300 | WP_000542259.1 | hypothetical protein | - |
| GTH18_RS24750 () | 34228..34716 | - | 489 | WP_000468105.1 | hypothetical protein | - |
| GTH18_RS24755 () | 34731..36923 | - | 2193 | WP_000366822.1 | DNA topoisomerase 3 | - |
| GTH18_RS24760 () | 36923..37156 | - | 234 | WP_001191892.1 | hypothetical protein | - |
| GTH18_RS24765 () | 37138..37755 | - | 618 | WP_001249396.1 | hypothetical protein | - |
| GTH18_RS24770 () | 37923..40901 | + | 2979 | WP_001337757.1 | hypothetical protein | Relaxase |
| GTH18_RS24775 () | 40898..42763 | + | 1866 | WP_000178856.1 | conjugative transfer system coupling protein TraD | - |
| GTH18_RS24780 () | 42774..43358 | + | 585 | WP_000332866.1 | hypothetical protein | - |
| GTH18_RS24785 () | 43315..43944 | + | 630 | WP_000743450.1 | DUF4400 domain-containing protein | - |
| GTH18_RS24790 () | 43954..44400 | + | 447 | WP_000122506.1 | hypothetical protein | - |
| GTH18_RS24795 () | 44410..44787 | + | 378 | WP_000869261.1 | hypothetical protein | - |
| GTH18_RS24800 () | 44787..45449 | + | 663 | WP_001231463.1 | hypothetical protein | - |
| GTH18_RS24805 () | 45630..45773 | + | 144 | WP_001275801.1 | hypothetical protein | - |
| GTH18_RS24810 () | 45773..46150 | + | 378 | WP_000509509.1 | hypothetical protein | - |
| GTH18_RS24815 () | 46295..46576 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| GTH18_RS24820 () | 46573..47199 | + | 627 | WP_001049716.1 | hypothetical protein | - |
| GTH18_RS24825 () | 47183..48100 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| GTH18_RS24830 () | 48100..49413 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| GTH18_RS24835 () | 49410..49988 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GTH18_RS24840 () | 49992..50384 | + | 393 | WP_000479535.1 | hypothetical protein | - |
| GTH18_RS24845 () | 50585..56116 | + | 5532 | WP_000606833.1 | DUF4165 domain-containing protein | - |
| GTH18_RS24850 () | 56265..56972 | + | 708 | WP_001259347.1 | DsbC family protein | - |
| GTH18_RS24855 () | 56969..59416 | + | 2448 | WP_000637386.1 | type IV secretion system protein TraC | - |
| GTH18_RS24860 () | 59431..59748 | + | 318 | WP_000351984.1 | hypothetical protein | - |
| GTH18_RS24865 () | 59745..60275 | + | 531 | WP_001010738.1 | S26 family signal peptidase | - |
| GTH18_RS24870 () | 60238..61503 | + | 1266 | WP_000621288.1 | conjugal transfer protein TraW | - |
| GTH18_RS24875 () | 61500..62171 | + | 672 | WP_001337754.1 | EAL domain-containing protein | - |
| GTH18_RS24880 () | 62168..63175 | + | 1008 | WP_000983283.1 | TraU family protein | - |
| GTH18_RS24885 () | 63279..66089 | + | 2811 | WP_001909286.1 | conjugal transfer mating pair stabilization protein TraN | - |
| GTH18_RS24890 () | 66128..66988 | - | 861 | WP_000709517.1 | hypothetical protein | - |
| GTH18_RS24895 () | 67111..67752 | - | 642 | WP_000796664.1 | hypothetical protein | - |
| GTH18_RS24900 () | 68046..68366 | + | 321 | WP_000547566.1 | hypothetical protein | - |
| GTH18_RS24905 () | 68670..68855 | + | 186 | WP_001186917.1 | hypothetical protein | - |
| GTH18_RS24910 () | 69075..70043 | + | 969 | WP_000085162.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| GTH18_RS24915 () | 70054..70962 | + | 909 | WP_000739139.1 | hypothetical protein | - |
| GTH18_RS24920 () | 71023..71553 | + | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| GTH18_RS24925 () | 71648..72637 | + | 990 | WP_001282585.1 | phage recombination protein Bet | - |
| GTH18_RS24930 () | 72700..73710 | + | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| GTH18_RS24935 () | 73910..75187 | + | 1278 | WP_000170086.1 | DUF3150 domain-containing protein | - |
| GTH18_RS24940 () | 75272..77068 | + | 1797 | WP_021598075.1 | VWA domain-containing protein | - |
| GTH18_RS24945 () | 77130..77465 | + | 336 | WP_001071288.1 | hypothetical protein | - |
| GTH18_RS24950 () | 77730..78269 | + | 540 | WP_000018872.1 | hypothetical protein | - |
| GTH18_RS24955 () | 78360..78860 | + | 501 | WP_000793769.1 | hypothetical protein | - |
| GTH18_RS24960 () | 78934..79818 | + | 885 | WP_000477209.1 | hypothetical protein | - |
| GTH18_RS24965 () | 79884..80108 | + | 225 | WP_001102700.1 | 2Fe-2S ferredoxin-like protein | - |
| GTH18_RS24970 () | 80170..80559 | + | 390 | WP_000026577.1 | hypothetical protein | - |
| GTH18_RS24975 () | 80549..81001 | + | 453 | WP_001176699.1 | hypothetical protein | - |
| GTH18_RS24980 () | 81079..81321 | - | 243 | WP_002210529.1 | hypothetical protein | - |
| GTH18_RS24985 () | 81339..81530 | + | 192 | WP_000651508.1 | hypothetical protein | - |
| GTH18_RS24990 () | 81575..81952 | + | 378 | WP_001337696.1 | hypothetical protein | - |
| GTH18_RS24995 () | 82144..82488 | + | 345 | WP_000209093.1 | hypothetical protein | - |
| GTH18_RS25000 () | 82566..82868 | + | 303 | WP_000410925.1 | hypothetical protein | - |
| GTH18_RS25005 () | 82946..83203 | + | 258 | Protein_105 | DNA cytosine methyltransferase | - |
| GTH18_RS25010 () | 83272..84054 | - | 783 | WP_001531258.1 | IS21 family transposase ISSen3 | Transposase |
| GTH18_RS25015 () | 84051..85073 | - | 1023 | WP_000627495.1 | IS21 family transposase ISSen3 | Transposase |
| GTH18_RS25020 () | 85159..86532 | + | 1374 | Protein_108 | DNA cytosine methyltransferase | - |
| GTH18_RS25025 () | 86593..87024 | + | 432 | WP_000687894.1 | hypothetical protein | - |
| GTH18_RS25030 () | 87098..87652 | + | 555 | WP_001093868.1 | hypothetical protein | - |
| GTH18_RS25035 () | 87885..88271 | + | 387 | WP_000042274.1 | hypothetical protein | - |
| GTH18_RS25040 () | 88359..90812 | + | 2454 | WP_001187970.1 | phosphoadenosine phosphosulfate reductase | - |
| GTH18_RS25045 () | 91014..91217 | + | 204 | WP_000050848.1 | hypothetical protein | - |
| GTH18_RS25050 () | 91289..91894 | + | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
| GTH18_RS25055 () | 91887..92156 | + | 270 | WP_000184110.1 | hypothetical protein | - |
| GTH18_RS25060 () | 92170..92388 | + | 219 | WP_000260293.1 | hypothetical protein | - |
| GTH18_RS25065 () | 92462..93019 | + | 558 | WP_000064431.1 | pyruvate dehydrogenase | - |
| GTH18_RS25070 () | 93094..93945 | + | 852 | WP_000595210.1 | hypothetical protein | - |
| GTH18_RS25075 () | 94403..94789 | + | 387 | WP_001077335.1 | hypothetical protein | - |
| GTH18_RS25080 () | 94967..96694 | + | 1728 | WP_000122923.1 | toprim domain-containing protein | - |
| GTH18_RS25085 () | 96681..96959 | + | 279 | WP_072647758.1 | hypothetical protein | - |
| GTH18_RS25090 () | 97032..97271 | + | 240 | WP_000714162.1 | permease | - |
| GTH18_RS25095 () | 97281..97397 | + | 117 | WP_000338626.1 | hypothetical protein | - |
| GTH18_RS25100 () | 97518..97892 | + | 375 | WP_000868821.1 | hypothetical protein | - |
| GTH18_RS25105 () | 98006..98731 | + | 726 | WP_000988732.1 | hypothetical protein | - |
| GTH18_RS25110 () | 98972..101776 | + | 2805 | Protein_126 | RHS repeat protein | - |
| GTH18_RS25115 () | 101794..102690 | - | 897 | Protein_127 | IS3 family transposase ISEhe3 | Transposase |
| GTH18_RS25120 () | 102755..103915 | + | 1161 | WP_176350242.1 | IS30 family transposase ISYkr1 | Transposase |
| GTH18_RS25125 () | 103925..104173 | - | 249 | Protein_129 | IS3 family transposase ISEhe3 | Transposase |
| GTH18_RS25130 () | 104235..105590 | + | 1356 | Protein_130 | tRNA3(Ser)-specific nuclease WapA | VF |
| GTH18_RS25135 () | 105587..105859 | + | 273 | WP_000787563.1 | MafI family immunity protein | - |
| GTH18_RS25140 () | 106154..106453 | + | 300 | WP_011872911.1 | hypothetical protein | - |
| GTH18_RS25145 () | 106620..107072 | + | 453 | WP_000791469.1 | hypothetical protein | - |
| GTH18_RS25150 () | 107088..107690 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| GTH18_RS25155 () | 107952..108233 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| GTH18_RS25160 () | 108532..109068 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| GTH18_RS25165 () | 109071..110081 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| GTH18_RS25170 () | 110086..110283 | + | 198 | Protein_138 | 3'-5' exonuclease | - |
| GTH18_RS25175 () | 110448..110792 | - | 345 | WP_089069021.1 | hypothetical protein | - |
| GTH18_RS25180 () | 110816..111433 | - | 618 | WP_089069025.1 | hypothetical protein | - |
| GTH18_RS25185 () | 111443..112156 | - | 714 | WP_089069026.1 | HupE/UreJ family protein | - |
| GTH18_RS25190 () | 112212..115340 | - | 3129 | WP_089069027.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| GTH18_RS25195 () | 115352..116590 | - | 1239 | WP_089069028.1 | efflux RND transporter periplasmic adaptor subunit | - |
| GTH18_RS25200 () | 116592..117869 | - | 1278 | WP_089069029.1 | TolC family protein | - |
| GTH18_RS25205 () | 117917..118309 | - | 393 | WP_089069030.1 | hypothetical protein | - |
| GTH18_RS25210 () | 118401..118751 | - | 351 | WP_089069031.1 | DUF3147 family protein | - |
| GTH18_RS25215 () | 119049..120029 | - | 981 | WP_089069032.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| GTH18_RS25220 () | 120307..120576 | + | 270 | WP_089069033.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| GTH18_RS25225 () | 120576..120851 | + | 276 | WP_089069034.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GTH18_RS25230 () | 120854..122041 | + | 1188 | WP_089069035.1 | hypothetical protein | - |
| GTH18_RS25235 () | 122047..122985 | + | 939 | WP_089069036.1 | Tn3 family transposase TnpR_ISPa43 | Transposase |
| GTH18_RS25240 () | 123089..126094 | + | 3006 | WP_089069037.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| GTH18_RS25245 () | 126267..126848 | + | 582 | WP_052952388.1 | 3'-5' exonuclease | - |
| GTH18_RS25250 () | 126845..127336 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| GTH18_RS25255 () | 127663..128538 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| GTH18_RS25260 () | 128691..129731 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| GTH18_RS25265 () | 130018..131529 | + | 1512 | WP_000811656.1 | ATP-dependent helicase | - |
| GTH18_RS25270 () | 131640..132680 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| GTH18_RS25275 () | 132682..134115 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| GTH18_RS25280 () | 134128..137742 | + | 3615 | WP_072647760.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GTH18_RS25285 () | 137780..138142 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| GTH18_RS25290 () | 138858..139130 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| GTH18_RS25295 () | 139130..139663 | + | 534 | WP_032064504.1 | transglycosylase SLT domain-containing protein | - |
| GTH18_RS25300 () | 139674..140282 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| GTH18_RS25305 () | 140279..140830 | + | 552 | WP_001020646.1 | hypothetical protein | - |
| GTH18_RS25310 () | 140890..141309 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
| GTH18_RS25315 () | 141311..141604 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| GTH18_RS25320 () | 141621..142604 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| GTH18_RS25325 () | 143103..143642 | + | 540 | WP_001447712.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|