MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 151830 bp
Accession: NZ_CP055224 Location: 3849398..4001227 Organism: Pectobacterium atrosepticum strain Green1 Replicon: chromosome
Accession: NZ_CP055224 Location: 3849398..4001227 Organism: Pectobacterium atrosepticum strain Green1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLB43_RS16985 (HLB43_16980) | 3845561..3847429 | + | 1869 | WP_011092533.1 | Svx/AvrXca family virulence/avirulence protein | - |
| HLB43_RS16995 (HLB43_16990) | 3847998..3849191 | + | 1194 | WP_011092532.1 | multidrug efflux MFS transporter | - |
| HLB43_RS17000 (HLB43_16995) | 3849530..3849931 | + | 402 | WP_011092531.1 | biopolymer transporter ExbD | - |
| HLB43_RS17005 (HLB43_17000) | 3849933..3850682 | + | 750 | WP_011092530.1 | biopolymer transporter TonB | - |
| HLB43_RS17010 (HLB43_17005) | 3850760..3853000 | + | 2241 | WP_011092529.1 | TonB-dependent receptor | - |
| HLB43_RS17015 (HLB43_17010) | 3853269..3853937 | + | 669 | WP_011092528.1 | MotA/TolQ/ExbB proton channel family protein | - |
| HLB43_RS17020 (HLB43_17015) | 3853930..3855264 | + | 1335 | WP_011092527.1 | phospholipase D-like domain-containing protein | - |
| HLB43_RS17025 (HLB43_17020) | 3855298..3856659 | + | 1362 | WP_011092526.1 | esterase-like activity of phytase family protein | - |
| HLB43_RS17030 (HLB43_17025) | 3856798..3857688 | - | 891 | WP_011092525.1 | SDR family oxidoreductase | - |
| HLB43_RS17035 (HLB43_17030) | 3857815..3858750 | + | 936 | WP_226302335.1 | HTH-type transcriptional regulator ArgP | VF |
| HLB43_RS17040 (HLB43_17035) | 3858911..3859597 | - | 687 | WP_011092523.1 | GntR family transcriptional regulator | - |
| HLB43_RS17045 (HLB43_17040) | 3859688..3861154 | - | 1467 | WP_011092522.1 | mannitol dehydrogenase family protein | - |
| HLB43_RS17050 (HLB43_17045) | 3861257..3862630 | - | 1374 | WP_011092521.1 | MFS transporter | - |
| HLB43_RS17055 (HLB43_17050) | 3863025..3864047 | - | 1023 | WP_011092520.1 | Zn-dependent oxidoreductase | - |
| HLB43_RS17060 (HLB43_17055) | 3864077..3865291 | - | 1215 | WP_039290354.1 | D-galactonate dehydratase family protein | - |
| HLB43_RS17065 (HLB43_17060) | 3865464..3866363 | - | 900 | WP_011092518.1 | LysR family transcriptional regulator | - |
| HLB43_RS17070 (HLB43_17065) | 3866765..3867730 | + | 966 | WP_011092517.1 | alpha/beta hydrolase | - |
| HLB43_RS17075 (HLB43_17070) | 3868263..3868961 | + | 699 | WP_011092516.1 | 4Fe-4S dicluster domain-containing protein | - |
| HLB43_RS17080 (HLB43_17075) | 3868954..3869916 | + | 963 | WP_039297226.1 | cytochrome c nitrite reductase subunit NrfD | - |
| HLB43_RS17085 (HLB43_17080) | 3869917..3871293 | + | 1377 | WP_039290346.1 | MFS transporter | - |
| HLB43_RS17090 (HLB43_17085) | 3871351..3871698 | + | 348 | WP_039294719.1 | FMN-binding protein | - |
| HLB43_RS17095 (HLB43_17090) | 3871809..3873338 | + | 1530 | WP_039290343.1 | FAD-dependent oxidoreductase | - |
| HLB43_RS17100 (HLB43_17095) | 3873568..3874224 | - | 657 | WP_039290340.1 | DNA oxidative demethylase AlkB | - |
| HLB43_RS17105 (HLB43_17100) | 3874221..3875336 | - | 1116 | WP_039290337.1 | Methylated-DNA--protein-cysteine methyltransferase | VF |
| HLB43_RS17110 (HLB43_17105) | 3875560..3876222 | + | 663 | WP_039290333.1 | DNA-3-methyladenine glycosylase | - |
| HLB43_RS17115 (HLB43_17110) | 3876232..3876702 | - | 471 | WP_039290329.1 | multidrug/biocide efflux PACE transporter | - |
| HLB43_RS17120 (HLB43_17115) | 3876967..3877845 | + | 879 | WP_011092507.1 | HTH-type transcriptional regulator ArgP | VF |
| HLB43_RS17125 (HLB43_17120) | 3878294..3879937 | + | 1644 | WP_039290325.1 | class I fumarate hydratase FumA | - |
| HLB43_RS17130 (HLB43_17125) | 3880148..3881686 | - | 1539 | WP_215216012.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| HLB43_RS17135 (HLB43_17130) | 3881854..3883371 | + | 1518 | WP_039309679.1 | anaerobic nitric oxide reductase flavorubredoxin | - |
| HLB43_RS17140 (HLB43_17135) | 3883382..3884518 | + | 1137 | WP_039290317.1 | NADH:flavorubredoxin reductase NorW | - |
| HLB43_RS17145 (HLB43_17140) | 3884890..3885750 | + | 861 | WP_039290314.1 | SAM-dependent methyltransferase TehB | - |
| HLB43_RS17150 (HLB43_17145) | 3885835..3886488 | - | 654 | WP_039290310.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| HLB43_RS17155 (HLB43_17150) | 3887128..3887421 | + | 294 | WP_039290308.1 | accessory factor UbiK family protein | - |
| HLB43_RS17160 (HLB43_17155) | 3887495..3888748 | - | 1254 | WP_039290307.1 | L-methionine/branched-chain amino acid transporter | - |
| HLB43_RS17165 (HLB43_17160) | 3888877..3889875 | - | 999 | WP_181023444.1 | cell division protein ZipA | - |
| HLB43_RS17170 (HLB43_17165) | 3890101..3890928 | + | 828 | WP_215216175.1 | sulfate transporter CysZ | - |
| HLB43_RS17175 (HLB43_17170) | 3891091..3892059 | + | 969 | WP_011092496.1 | cysteine synthase A | - |
| HLB43_RS17180 (HLB43_17175) | 3892513..3892770 | + | 258 | WP_002441228.1 | phosphocarrier protein Hpr | - |
| HLB43_RS17185 (HLB43_17180) | 3892816..3894543 | + | 1728 | WP_039290298.1 | phosphoenolpyruvate-protein phosphotransferase PtsI | - |
| HLB43_RS17190 (HLB43_17185) | 3894693..3895202 | + | 510 | WP_011092494.1 | PTS glucose transporter subunit IIA | - |
| HLB43_RS17195 (HLB43_17190) | 3895269..3896636 | - | 1368 | WP_039290295.1 | ATP-binding protein | - |
| HLB43_RS17200 (HLB43_17195) | 3896636..3897316 | - | 681 | WP_039290292.1 | Regulator of RpoS | VF |
| HLB43_RS17205 (HLB43_17200) | 3897567..3898763 | + | 1197 | WP_039290289.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HLB43_RS17210 (HLB43_17205) | 3898767..3900719 | + | 1953 | WP_039290286.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HLB43_RS17215 (HLB43_17210) | 3900762..3901643 | - | 882 | WP_011092489.1 | cysteine synthase CysM | - |
| HLB43_RS17220 (HLB43_17215) | 3901818..3902711 | - | 894 | WP_011092488.1 | sulfate/thiosulfate ABC transporter permease CysW | - |
| HLB43_RS17225 (HLB43_17220) | 3902711..3903565 | - | 855 | WP_011092487.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| HLB43_RS17230 (HLB43_17225) | 3903565..3904593 | - | 1029 | WP_011092486.1 | sulfate ABC transporter substrate-binding protein | - |
| HLB43_RS17235 (HLB43_17230) | 3904876..3905775 | - | 900 | WP_011092485.1 | Dyp-type peroxidase | - |
| HLB43_RS17240 (HLB43_17235) | 3905942..3906541 | - | 600 | WP_011092484.1 | RpoE-regulated lipoprotein | - |
| HLB43_RS17245 (HLB43_17240) | 3906730..3908403 | - | 1674 | WP_039290280.1 | hypothetical protein | VF |
| HLB43_RS17250 (HLB43_17245) | 3908400..3911174 | - | 2775 | WP_039310832.1 | M16 family metallopeptidase | - |
| HLB43_RS17255 (HLB43_17250) | 3911280..3913871 | - | 2592 | WP_039310823.1 | TonB-dependent receptor plug domain-containing protein | - |
| HLB43_RS17260 (HLB43_17255) | 3913948..3914910 | - | 963 | WP_039310825.1 | TonB family protein | - |
| HLB43_RS17265 (HLB43_17260) | 3915560..3917758 | + | 2199 | WP_039290271.1 | Vitamin B12 transporter BtuB | VF |
| HLB43_RS17270 (HLB43_17265) | 3917865..3918290 | - | 426 | WP_011092478.1 | GNAT family acetyltransferase | - |
| HLB43_RS17275 (HLB43_17270) | 3918472..3919404 | + | 933 | WP_011092477.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| HLB43_RS17280 (HLB43_17275) | 3919408..3919860 | + | 453 | WP_039297674.1 | YaiI/YqxD family protein | - |
| HLB43_RS17285 (HLB43_17280) | 3919939..3921213 | - | 1275 | WP_011092475.1 | tryptophan permease | - |
| HLB43_RS17290 (HLB43_17285) | 3921610..3923889 | - | 2280 | WP_039297678.1 | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | - |
| HLB43_RS17295 (HLB43_17290) | 3924144..3925106 | - | 963 | WP_011092473.1 | sugar-binding transcriptional regulator | - |
| HLB43_RS17300 (HLB43_17295) | 3925306..3926163 | - | 858 | WP_011092472.1 | phosphogluconate dehydrogenase C-terminal domain-containing protein | - |
| HLB43_RS17305 (HLB43_17300) | 3926191..3927018 | - | 828 | WP_039290260.1 | TIM barrel protein | - |
| HLB43_RS17310 (HLB43_17305) | 3927035..3927814 | - | 780 | WP_039290257.1 | triose-phosphate isomerase family protein | - |
| HLB43_RS17315 (HLB43_17310) | 3927811..3929583 | - | 1773 | WP_039290254.1 | dihydroxyacetone kinase family protein | - |
| HLB43_RS17320 (HLB43_17315) | 3929585..3930967 | - | 1383 | WP_039290251.1 | MFS transporter | - |
| HLB43_RS17325 (HLB43_17320) | 3931511..3931969 | + | 459 | WP_039290245.1 | ribose 5-phosphate isomerase B | - |
| HLB43_RS17330 (HLB43_17325) | 3932168..3933118 | + | 951 | WP_011092465.1 | transaldolase | - |
| HLB43_RS17335 (HLB43_17330) | 3933134..3935128 | + | 1995 | WP_039290242.1 | transketolase | - |
| HLB43_RS17340 (HLB43_17335) | 3935445..3937364 | + | 1920 | WP_039294713.1 | beta-glucoside-specific PTS transporter subunit IIABC | - |
| HLB43_RS17345 (HLB43_17340) | 3937430..3938857 | + | 1428 | WP_039290236.1 | glycoside hydrolase family 1 protein | - |
| HLB43_RS17350 (HLB43_17345) | 3939006..3939854 | + | 849 | WP_080641362.1 | PRD domain-containing protein | - |
| HLB43_RS17355 (HLB43_17350) | 3940266..3941162 | + | 897 | WP_039290234.1 | ABC transporter substrate-binding protein | - |
| HLB43_RS17360 (HLB43_17355) | 3941159..3942103 | + | 945 | WP_039290231.1 | amino acid ABC transporter permease | - |
| HLB43_RS17365 (HLB43_17360) | 3942178..3942939 | + | 762 | WP_039290228.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HLB43_RS17370 (HLB43_17365) | 3943076..3944107 | + | 1032 | WP_011092457.1 | LacI family DNA-binding transcriptional regulator | - |
| HLB43_RS17375 (HLB43_17370) | 3944226..3945749 | - | 1524 | WP_039290224.1 | glycosyl hydrolase 53 family protein | - |
| HLB43_RS17380 (HLB43_17375) | 3946098..3947183 | - | 1086 | WP_039290221.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HLB43_RS17385 (HLB43_17380) | 3947220..3948032 | - | 813 | WP_039290217.1 | carbohydrate ABC transporter permease | - |
| HLB43_RS17390 (HLB43_17385) | 3948034..3948915 | - | 882 | WP_039290214.1 | sugar ABC transporter permease | - |
| HLB43_RS17395 (HLB43_17390) | 3948979..3950244 | - | 1266 | WP_039290211.1 | extracellular solute-binding protein | - |
| HLB43_RS17400 (HLB43_17395) | 3950639..3951220 | - | 582 | WP_011092451.1 | GDP-mannose pyrophosphatase NudK | - |
| HLB43_RS17405 (HLB43_17400) | 3951598..3952695 | + | 1098 | WP_011092450.1 | glycerol dehydrogenase | - |
| HLB43_RS17410 (HLB43_17405) | 3952894..3954060 | + | 1167 | WP_039290208.1 | MFS transporter | - |
| HLB43_RS17415 (HLB43_17410) | 3954074..3954277 | + | 204 | WP_010282462.1 | 4-oxalocrotonate tautomerase family protein | - |
| HLB43_RS17420 (HLB43_17415) | 3954309..3955541 | - | 1233 | WP_011092448.1 | Nramp family divalent metal transporter | - |
| HLB43_RS17425 (HLB43_17420) | 3955978..3956565 | - | 588 | WP_039290202.1 | nucleotide exchange factor GrpE | - |
| HLB43_RS17430 (HLB43_17425) | 3956714..3957592 | + | 879 | WP_011092446.1 | NAD(+) kinase | - |
| HLB43_RS17435 (HLB43_17430) | 3957672..3959333 | + | 1662 | WP_039290198.1 | hypothetical protein | VF |
| HLB43_RS17440 (HLB43_17435) | 3959488..3959823 | + | 336 | WP_011092444.1 | outer membrane protein assembly factor BamE | - |
| HLB43_RS17445 (HLB43_17440) | 3960061..3960351 | - | 291 | WP_039290195.1 | RnfH family protein | - |
| HLB43_RS17450 (HLB43_17445) | 3960332..3960778 | - | 447 | WP_039290192.1 | type II toxin-antitoxin system RatA family toxin | - |
| HLB43_RS17455 (HLB43_17450) | 3960934..3961416 | + | 483 | WP_011092441.1 | SsrA-binding protein SmpB | - |
| HLB43_RS17465 (HLB43_17460) | 3961994..3963223 | + | 1230 | WP_039290184.1 | hypothetical protein ; Integrase | Integrase |
| HLB43_RS17470 (HLB43_17465) | 3963306..3965045 | + | 1740 | WP_080641345.1 | LA2681 family HEPN domain-containing protein | - |
| HLB43_RS17475 (HLB43_17470) | 3965247..3965435 | - | 189 | WP_024150808.1 | hypothetical protein | - |
| HLB43_RS17480 (HLB43_17475) | 3965707..3965943 | - | 237 | WP_001528703.1 | hypothetical protein | - |
| HLB43_RS17485 (HLB43_17480) | 3966337..3966603 | - | 267 | WP_215216013.1 | hypothetical protein | - |
| HLB43_RS17490 (HLB43_17485) | 3966850..3967005 | - | 156 | WP_215216014.1 | hypothetical protein | - |
| HLB43_RS17495 (HLB43_17490) | 3967002..3967187 | - | 186 | WP_023214638.1 | hypothetical protein | - |
| HLB43_RS17500 (HLB43_17495) | 3967524..3968654 | + | 1131 | WP_215216015.1 | MobQ family relaxase | - |
| HLB43_RS22195 | 3969186..3969675 | + | 490 | Protein_3449 | DUF4755 domain-containing protein | - |
| HLB43_RS17510 (HLB43_17505) | 3969920..3970087 | + | 168 | WP_215216016.1 | hypothetical protein | - |
| HLB43_RS17515 (HLB43_17510) | 3970991..3971194 | - | 204 | WP_039290153.1 | AlpA family transcriptional regulator | - |
| HLB43_RS17520 (HLB43_17515) | 3971935..3973122 | + | 1188 | WP_039297461.1 | hypothetical protein ; Integrase | Integrase |
| HLB43_RS17525 (HLB43_17520) | 3973185..3973664 | - | 480 | WP_215216017.1 | hypothetical protein | - |
| HLB43_RS17530 (HLB43_17525) | 3973648..3974580 | - | 933 | WP_215216018.1 | hypothetical protein | - |
| HLB43_RS17535 (HLB43_17530) | 3974974..3975222 | - | 249 | WP_071598516.1 | ogr/Delta-like zinc finger family protein | - |
| HLB43_RS17540 (HLB43_17535) | 3975219..3975980 | - | 762 | WP_039290148.1 | hypothetical protein | - |
| HLB43_RS17545 (HLB43_17540) | 3976527..3976787 | + | 261 | WP_039290147.1 | AlpA family transcriptional regulator | - |
| HLB43_RS17550 (HLB43_17545) | 3976784..3977008 | + | 225 | WP_039281995.1 | hypothetical protein | - |
| HLB43_RS17555 (HLB43_17550) | 3977017..3977274 | + | 258 | WP_215216019.1 | ash family protein | - |
| HLB43_RS17560 (HLB43_17555) | 3977364..3977561 | + | 198 | WP_039294701.1 | host cell division inhibitor Icd-like protein | - |
| HLB43_RS17565 (HLB43_17560) | 3977554..3977748 | + | 195 | WP_039294697.1 | hypothetical protein | - |
| HLB43_RS17570 (HLB43_17565) | 3977745..3978011 | + | 267 | WP_039290145.1 | hypothetical protein | - |
| HLB43_RS17575 (HLB43_17570) | 3978008..3978349 | + | 342 | WP_039290142.1 | DUF5375 family protein | - |
| HLB43_RS17580 (HLB43_17575) | 3978360..3980687 | + | 2328 | WP_039290139.1 | phage/plasmid primase, P4 family | - |
| HLB43_RS17585 (HLB43_17580) | 3980947..3981198 | + | 252 | WP_005973616.1 | prevent-host-death protein | Antitoxin Detail |
| HLB43_RS17590 (HLB43_17585) | 3981188..3981472 | + | 285 | WP_039290137.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HLB43_RS17595 (HLB43_17590) | 3981773..3982000 | - | 228 | WP_039290135.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HLB43_RS17600 (HLB43_17595) | 3981984..3982529 | - | 546 | WP_039282029.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| HLB43_RS17605 (HLB43_17600) | 3982905..3983332 | + | 428 | Protein_3469 | primase-like DNA-binding domain-containing protein | - |
| HLB43_RS17610 (HLB43_17605) | 3983636..3983989 | + | 354 | WP_215216020.1 | hypothetical protein | - |
| HLB43_RS17615 (HLB43_17610) | 3984192..3984794 | + | 603 | WP_215216021.1 | transglycosylase domain-containing protein | - |
| HLB43_RS17620 (HLB43_17615) | 3985671..3986150 | + | 480 | WP_226302329.1 | hypothetical protein | - |
| HLB43_RS17625 (HLB43_17620) | 3986198..3987345 | + | 1148 | WP_100675189.1 | IS3 family transposase ISPeat2 | Transposase |
| HLB43_RS17630 (HLB43_17625) | 3987756..3988538 | + | 783 | WP_215216022.1 | ABC transporter substrate-binding protein | - |
| HLB43_RS17635 (HLB43_17630) | 3988735..3989361 | + | 627 | WP_011092432.1 | LysE family transporter | - |
| HLB43_RS17640 (HLB43_17635) | 3989405..3989887 | - | 483 | WP_282916247.1 | GNAT family N-acetyltransferase | - |
| HLB43_RS17645 (HLB43_17640) | 3990262..3990687 | - | 426 | WP_011092430.1 | hypothetical protein | - |
| HLB43_RS17650 (HLB43_17645) | 3991077..3994610 | + | 3534 | WP_215216023.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| HLB43_RS17655 (HLB43_17650) | 3994884..3995420 | + | 537 | WP_011092428.1 | cytochrome b561 | - |
| HLB43_RS17660 (HLB43_17655) | 3995442..3996239 | + | 798 | WP_039290119.1 | deaminated glutathione amidase | - |
| HLB43_RS17665 (HLB43_17660) | 3996421..3997512 | + | 1092 | WP_039290116.1 | hypothetical protein | VF |
| HLB43_RS17670 (HLB43_17665) | 3997575..3998855 | - | 1281 | WP_039290114.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| HLB43_RS17675 (HLB43_17670) | 3999177..4000664 | + | 1488 | WP_039297452.1 | fructuronate reductase | - |
| HLB43_RS17680 (HLB43_17675) | 4000657..4001031 | - | 375 | WP_039297450.1 | hypothetical protein | - |
| HLB43_RS17685 (HLB43_17680) | 4001414..4002940 | + | 1527 | WP_011092422.1 | MFS transporter | - |
| HLB43_RS17690 (HLB43_17685) | 4003015..4003632 | - | 618 | WP_039297446.1 | hypothetical protein | - |
| HLB43_RS17695 (HLB43_17690) | 4003784..4004794 | - | 1011 | WP_039297443.1 | AI-2E family transporter | - |
| HLB43_RS17700 (HLB43_17695) | 4004977..4005924 | - | 948 | WP_039297440.1 | DUF4880 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|