MGE detailed information
MGE type: Prophage MGE length: 26939 bp
Accession: NZ_CP055199 Location: 1935222..1962160 Organism: Shigella flexneri strain STEFF_3 Replicon: chromosome
Accession: NZ_CP055199 Location: 1935222..1962160 Organism: Shigella flexneri strain STEFF_3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ39_RS09270 (1930647) | 1930647..1930697 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| HUZ39_RS09275 (1930980) | 1930980..1931231 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| HUZ39_RS09280 (1931228) | 1931228..1931482 | + | 255 | WP_072663248.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| HUZ39_RS09285 (1931565) | 1931565..1932389 | + | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
| HUZ39_RS09290 (1932435) | 1932435..1933364 | + | 930 | WP_000803366.1 | LysR substrate-binding domain-containing protein | - |
| HUZ39_RS09295 (1933579) | 1933579..1933641 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| HUZ39_RS09300 (1933631) | 1933631..1934989 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| HUZ39_RS09305 (1935168) | 1935168..1936226 | + | 1059 | WP_000492305.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| HUZ39_RS09310 (1936240) | 1936240..1936467 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| HUZ39_RS09315 (1936510) | 1936510..1937934 | - | 1425 | WP_186178804.1 | exodeoxyribonuclease I | - |
| HUZ39_RS09320 (1938116) | 1938116..1939294 | + | 1179 | WP_104773793.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HUZ39_RS09325 (1939275) | 1939275..1939466 | - | 192 | WP_000132739.1 | AlpA family phage regulatory protein | - |
| HUZ39_RS09330 (1939548) | 1939548..1939892 | - | 345 | WP_024262601.1 | hypothetical protein | - |
| HUZ39_RS09335 (1940067) | 1940067..1940231 | - | 165 | WP_159195454.1 | DUF2737 family protein | - |
| HUZ39_RS09340 (1940242) | 1940242..1940535 | - | 294 | WP_072855028.1 | DUF2856 family protein | - |
| HUZ39_RS09345 (1941038) | 1941038..1941511 | - | 474 | WP_015973878.1 | single-stranded DNA-binding protein | - |
| HUZ39_RS09350 (1941512) | 1941512..1942219 | - | 708 | WP_033552097.1 | Rad52/Rad22 family DNA repair protein | - |
| HUZ39_RS09355 (1942228) | 1942228..1942398 | - | 171 | WP_016248933.1 | hypothetical protein | - |
| HUZ39_RS09360 (1942474) | 1942474..1942626 | - | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| HUZ39_RS09365 (1942611) | 1942611..1942742 | - | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HUZ39_RS09370 (1942767) | 1942767..1943735 | - | 969 | WP_072855055.1 | cell envelope biogenesis protein TolA | - |
| HUZ39_RS09375 (1943869) | 1943869..1944069 | - | 201 | WP_000333101.1 | hypothetical protein | - |
| HUZ39_RS09380 (1944069) | 1944069..1944320 | - | 252 | WP_097680305.1 | hypothetical protein | - |
| HUZ39_RS09385 (1944362) | 1944362..1944613 | - | 252 | WP_239637977.1 | hypothetical protein | - |
| HUZ39_RS09390 (1944582) | 1944582..1945643 | + | 1062 | Protein_1844 | lytic transglycosylase domain-containing protein | - |
| HUZ39_RS09395 (1945734) | 1945734..1946219 | - | 486 | WP_000749291.1 | hypothetical protein | - |
| HUZ39_RS09400 (1946290) | 1946290..1946556 | - | 267 | WP_000287056.1 | Arc family DNA-binding protein | - |
| HUZ39_RS09405 (1946678) | 1946678..1948954 | + | 2277 | WP_228253194.1 | phage head-binding domain-containing protein | - |
| HUZ39_RS09410 (1948984) | 1948984..1949919 | - | 936 | WP_167823527.1 | acyltransferase family protein | - |
| HUZ39_RS09415 (1951056) | 1951056..1952222 | + | 1167 | WP_000830163.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| HUZ39_RS09420 (1952341) | 1952341..1952814 | + | 474 | WP_001105393.1 | DNA gyrase inhibitor SbmC | - |
| HUZ39_RS09425 (1953012) | 1953012..1954070 | + | 1059 | WP_001200905.1 | FUSC family protein | - |
| HUZ39_RS09430 (1954242) | 1954242..1954571 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| HUZ39_RS09435 (1954672) | 1954672..1954806 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| HUZ39_RS09440 (1954926) | 1954926..1955054 | + | 129 | Protein_1854 | transposase domain-containing protein | - |
| HUZ39_RS09445 (1955343) | 1955343..1955423 | - | 81 | Protein_1855 | hypothetical protein | - |
| HUZ39_RS09450 (1955469) | 1955469..1955663 | - | 195 | WP_000988600.1 | DUF5983 family protein | - |
| HUZ39_RS09455 (1955660) | 1955660..1956034 | - | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin Detail |
| HUZ39_RS09460 (1956123) | 1956123..1956491 | - | 369 | WP_001285585.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| HUZ39_RS09465 (1956565) | 1956565..1956786 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| HUZ39_RS09470 (1956849) | 1956849..1957325 | - | 477 | WP_001186773.1 | RadC family protein | - |
| HUZ39_RS09475 (1957341) | 1957341..1957820 | - | 480 | WP_000860076.1 | antirestriction protein | - |
| HUZ39_RS09480 (1957902) | 1957902..1958723 | - | 822 | WP_001234530.1 | DUF932 domain-containing protein | - |
| HUZ39_RS09485 (1958944) | 1958944..1959354 | - | 411 | WP_000846713.1 | hypothetical protein | - |
| HUZ39_RS09490 (1959370) | 1959370..1960052 | - | 683 | Protein_1864 | hypothetical protein | - |
| HUZ39_RS09495 (1960188) | 1960188..1961258 | - | 1071 | WP_000102643.1 | patatin-like phospholipase family protein | - |
| HUZ39_RS09500 (1961255) | 1961255..1962160 | - | 906 | WP_000203545.1 | diguanylate cyclase regulator RdcB family protein | - |
| HUZ39_RS09505 (1962157) | 1962157..1964553 | - | 2397 | WP_000544732.1 | dynamin family protein | - |
| HUZ39_RS09510 (1964868) | 1964868..1964975 | - | 108 | Protein_1868 | GTPase family protein | - |
| HUZ39_RS09515 (1965059) | 1965059..1966210 | - | 1152 | WP_000514096.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|